feat: cierra issues 0050 y 0052 + commands automáticos
- 0050: jupyter_exec reescrito sin Y.js (REST + KernelClient). Bug raíz adicional: HEAD /api/contents da 405 → cambiado a GET. 9 tests (5 unit + 4 e2e). - 0052: footprint_aurgi cerrado. Bug fix en setup_geo_stack_docker_pipeline (verify aborta si compose up falla; nombre de contenedor incorrecto). - Nueva primitiva docker_container_running_py_infra (7 tests). - /full-git-push y /full-git-pull pasan a modo automático: auto-commit + push sin preguntar, aborta solo si detecta secrets. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
This commit is contained in:
@@ -3,17 +3,17 @@ name: jupyter_exec
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kind: function
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lang: py
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domain: notebook
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version: "1.0.0"
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version: "2.0.0"
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purity: impure
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signature: "jupyter_append_execute(notebook_path: str, code: str, server_url: str, token: str) -> dict"
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description: "Ejecuta codigo en kernels de Jupyter via WebSocket. Tres modos: append (añade celda al notebook y la ejecuta), cell (ejecuta celda existente por indice), kernel (ejecuta en el kernel sin tocar ningun notebook)."
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description: "Ejecuta codigo en kernels de Jupyter via REST + WebSocket clasico al kernel. Tres modos: append (añade celda y ejecuta), cell (ejecuta celda existente), kernel (ejecuta sin tocar notebook). NO usa el canal colaborativo Y.js."
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tags: [jupyter, notebook, kernel, websocket, execution, cells]
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uses_functions: []
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uses_types: []
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returns: []
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returns_optional: false
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error_type: "error_go_core"
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imports: [jupyter_kernel_client, jupyter_nbmodel_client]
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imports: [jupyter_kernel_client, urllib, json, uuid]
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params:
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- name: notebook_path
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desc: "Ruta relativa al notebook"
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@@ -24,9 +24,18 @@ params:
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- name: token
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desc: "Token de autenticación (default vacío)"
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output: "Dict con cell_index y outputs del código ejecutado, o resultados del kernel"
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tested: false
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tests: []
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test_file_path: ""
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tested: true
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tests:
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- "test_notebook_exists_uses_get_not_head"
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- "test_notebook_exists_returns_false_on_404"
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- "test_create_notebook_skips_when_exists"
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- "test_new_code_cell_has_required_fields"
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- "test_extract_outputs_handles_streams_and_results"
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- "e2e: test_e2e_append_executes_and_persists"
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- "e2e: test_e2e_append_twice_increments_index"
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- "e2e: test_e2e_cell_executes_existing"
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- "e2e: test_e2e_kernel_mode"
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test_file_path: "python/functions/notebook/tests/test_jupyter_exec.py"
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file_path: "python/functions/notebook/jupyter_exec.py"
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---
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@@ -34,9 +43,9 @@ file_path: "python/functions/notebook/jupyter_exec.py"
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### `jupyter_append_execute(notebook_path, code, server_url, token)`
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Añade una celda de codigo al final del notebook y la ejecuta. Usa el protocolo
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colaborativo de Jupyter, por lo que tanto el agente como el usuario ven la celda
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y su output en tiempo real en JupyterLab.
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Añade una celda de codigo al final del notebook, la ejecuta en el kernel y persiste
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celda + outputs a disco via REST `/api/contents`. Jupyter Lab detecta el cambio y lo
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refleja en el browser.
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```python
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from notebook.jupyter_exec import jupyter_append_execute
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@@ -52,23 +61,18 @@ result = jupyter_append_execute(
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### `jupyter_execute_cell(notebook_path, cell_index, server_url, token)`
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Ejecuta una celda existente del notebook por su indice (0-based).
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Ejecuta una celda existente por indice (0-based) y persiste sus outputs.
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```python
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from notebook.jupyter_exec import jupyter_execute_cell
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result = jupyter_execute_cell("notebooks/analisis.ipynb", 3)
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# {"cell_index": 3, "outputs": ["42"]}
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```
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### `jupyter_kernel_execute(code, server_url, token)`
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Ejecuta codigo directamente en el kernel sin modificar ningun notebook. Util para
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consultas rapidas, inspeccion de variables o verificacion de estado del kernel.
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Ejecuta codigo directo en el kernel sin tocar ningun notebook.
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```python
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from notebook.jupyter_exec import jupyter_kernel_execute
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result = jupyter_kernel_execute("len(df)")
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# {"outputs": ["1500"], "status": "ok"}
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```
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@@ -76,13 +80,8 @@ result = jupyter_kernel_execute("len(df)")
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## CLI
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```bash
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# Añadir celda y ejecutar
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python -m notebook.jupyter_exec append notebooks/mi.ipynb "print('hola')" --server http://localhost:8888 --token mytoken
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# Ejecutar celda existente
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python -m notebook.jupyter_exec cell notebooks/mi.ipynb 2 --server http://localhost:8888
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# Ejecutar en kernel directamente
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python -m notebook.jupyter_exec append notebooks/mi.ipynb "print('hola')"
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python -m notebook.jupyter_exec cell notebooks/mi.ipynb 2
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python -m notebook.jupyter_exec kernel "x = 42; print(x)"
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```
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@@ -96,12 +95,15 @@ Output siempre JSON. En error retorna `{"error": "..."}` por stderr con exit cod
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| display_data / execute_result | `data.text/plain` |
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| error | `traceback` (joined con `\n`) |
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## Notas
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## Notas (v2.0.0 — fix Issue 0050)
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- Las funciones `append` y `cell` son async internamente; las publicas usan `asyncio.run()`.
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- `jupyter_kernel_execute` es sincrona directamente porque `KernelClient.execute` es bloqueante.
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- **Bypassa el canal colaborativo Y.js**. Usa REST `/api/contents` para leer/escribir
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celdas y `KernelClient` (websocket clasico al kernel) para ejecutar. Robusto frente
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a versiones nuevas de `jupyter-collaboration` que rompian `NbModelClient`.
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- **Trade-off**: las celdas/outputs se persisten a disco, no se sincronizan en
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tiempo real via Y.js. Jupyter Lab detecta el cambio en el filesystem y lo refleja
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(puede pedir 'Revert to disk' segun version).
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- `_notebook_exists` usa `GET /api/contents?content=0` (HEAD devuelve 405 en Jupyter Server).
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- **Auto-init**: `jupyter_append_execute` crea el notebook si no existe y arranca una
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sesion con kernel si no hay ninguna activa para ese notebook.
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- El token puede ser cadena vacia si el servidor tiene autenticacion deshabilitada.
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- `NbModelClient` requiere que el servidor tenga habilitado el endpoint colaborativo (`/api/collaboration/`), disponible en JupyterLab >= 4 con `jupyter-collaboration` instalado.
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- **Auto-init**: `jupyter_append_execute` crea el notebook automaticamente si no existe (via REST PUT /api/contents) y arranca una sesion con kernel si no hay ninguna activa para ese notebook (via POST /api/sessions). No es necesario abrir el notebook manualmente en el navegador.
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- **Auto-session**: `jupyter_execute_cell` tambien garantiza que exista una sesion con kernel antes de ejecutar.
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- **Fix Issue 006**: `jupyter_execute_cell` normaliza la celda antes de ejecutar. Las celdas creadas manualmente (no via la UI de Jupyter) pueden carecer de `outputs` o `execution_count` en el modelo CRDT, lo que causaba `KeyError: 'outputs'` dentro de `execute_cell` al hacer `del ycell["outputs"][:]`. El fix lee la celda con `nb[cell_index]`, detecta los campos faltantes, y reemplaza la celda via `nb[cell_index] = _normalize_code_cell(cell)` — que usa `set_cell` internamente para re-crear el mapa CRDT completo preservando el source original.
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@@ -1,35 +1,48 @@
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"""Ejecuta codigo en kernels de Jupyter via WebSocket.
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"""Ejecuta codigo en kernels de Jupyter.
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Tres modos de ejecucion:
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Tres modos:
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- append: añade una celda al final del notebook y la ejecuta
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- cell: ejecuta una celda existente por indice
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- kernel: ejecuta codigo directamente en el kernel sin modificar ningun notebook
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- cell: ejecuta una celda existente por indice
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- kernel: ejecuta codigo directamente en el kernel sin tocar notebook
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Implementacion basada en REST `/api/contents` + `KernelClient` (websocket clasico
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al kernel). NO usa `jupyter_nbmodel_client` ni el canal colaborativo Y.js, por lo
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que es robusto frente a versiones nuevas de `jupyter-collaboration` (ver issue
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0050). Trade-off: los cambios al notebook se persisten a disco; Jupyter Lab los
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detecta via file watch (puede pedir 'Revert to disk' o 'Overwrite' segun version).
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"""
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import asyncio
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import json
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from functools import partial
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import uuid
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from typing import Any
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from urllib.error import HTTPError, URLError
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from urllib.request import Request, urlopen
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from jupyter_kernel_client import KernelClient
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from jupyter_nbmodel_client import NbModelClient, get_jupyter_notebook_websocket_url
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from nbformat import NotebookNode
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# ---------------------------------------------------------------------------
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# Helpers internos
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# Helpers REST
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# ---------------------------------------------------------------------------
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def _auth_headers(token: str, content_type: bool = False) -> dict[str, str]:
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headers = {"Accept": "application/json"}
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if content_type:
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headers["Content-Type"] = "application/json"
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if token:
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headers["Authorization"] = f"token {token}"
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return headers
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def _notebook_exists(notebook_path: str, server_url: str, token: str) -> bool:
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"""Comprueba si un notebook existe en el servidor Jupyter via HEAD /api/contents."""
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headers = {"Accept": "application/json"}
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if token:
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headers["Authorization"] = f"token {token}"
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check_url = f"{server_url}/api/contents/{notebook_path}"
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req = Request(check_url, headers=headers, method="HEAD")
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"""Comprueba si un notebook existe via GET /api/contents (con `content=0`).
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Nota: Jupyter Server no soporta HEAD en /api/contents (responde 405). Usamos
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GET con content=0 para evitar transferir el cuerpo completo.
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"""
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check_url = f"{server_url}/api/contents/{notebook_path}?content=0"
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req = Request(check_url, headers=_auth_headers(token), method="GET")
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try:
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with urlopen(req, timeout=5):
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return True
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@@ -43,12 +56,6 @@ def _create_notebook(notebook_path: str, server_url: str, token: str, kernel_nam
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"""Crea un notebook vacio via PUT /api/contents si no existe."""
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if _notebook_exists(notebook_path, server_url, token):
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return
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headers = {
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"Content-Type": "application/json",
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"Accept": "application/json",
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}
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if token:
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headers["Authorization"] = f"token {token}"
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kernel_display = {"python3": "Python 3 (ipykernel)", "python": "Python 3"}.get(kernel_name, kernel_name)
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notebook_content = {
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"nbformat": 4,
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@@ -61,49 +68,53 @@ def _create_notebook(notebook_path: str, server_url: str, token: str, kernel_nam
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}
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body = json.dumps({"type": "notebook", "content": notebook_content}).encode("utf-8")
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url = f"{server_url}/api/contents/{notebook_path}"
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req = Request(url, data=body, headers=headers, method="PUT")
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req = Request(url, data=body, headers=_auth_headers(token, content_type=True), method="PUT")
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with urlopen(req, timeout=10) as resp:
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resp.read()
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def _get_notebook_content(notebook_path: str, server_url: str, token: str) -> dict:
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"""Lee el notebook completo via GET /api/contents (con `content`)."""
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url = f"{server_url}/api/contents/{notebook_path}?content=1&type=notebook"
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req = Request(url, headers=_auth_headers(token), method="GET")
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with urlopen(req, timeout=10) as resp:
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return json.loads(resp.read())
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def _put_notebook_content(notebook_path: str, server_url: str, token: str, content: dict) -> None:
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"""Sobrescribe el notebook via PUT /api/contents."""
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body = json.dumps({"type": "notebook", "format": "json", "content": content}).encode("utf-8")
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url = f"{server_url}/api/contents/{notebook_path}"
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req = Request(url, data=body, headers=_auth_headers(token, content_type=True), method="PUT")
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with urlopen(req, timeout=10) as resp:
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resp.read()
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def _ensure_session(server_url: str, token: str, notebook_path: str, kernel_name: str = "python3") -> str:
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"""Garantiza que exista una sesion para el notebook. Retorna el kernel_id.
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"""Garantiza una sesion para el notebook. Retorna kernel_id.
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Si ya hay una sesion activa, retorna su kernel_id. Si no, crea una nueva
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via POST /api/sessions (lo cual tambien arranca un kernel).
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Si existe una sesion vinculada al notebook, reusa su kernel. Si no, crea
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sesion+kernel via POST /api/sessions.
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"""
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kernel_id = _resolve_kernel_id(server_url, token, notebook_path)
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if kernel_id:
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return kernel_id
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headers = {
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"Accept": "application/json",
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"Content-Type": "application/json",
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}
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if token:
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headers["Authorization"] = f"token {token}"
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body = json.dumps({
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"path": notebook_path,
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"type": "notebook",
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"kernel": {"name": kernel_name},
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}).encode("utf-8")
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url = f"{server_url}/api/sessions"
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req = Request(url, data=body, headers=headers, method="POST")
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req = Request(url, data=body, headers=_auth_headers(token, content_type=True), method="POST")
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with urlopen(req, timeout=10) as resp:
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session = json.loads(resp.read())
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return session.get("kernel", {}).get("id", "")
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def _api_get(url: str, token: str = "") -> dict | list | None:
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"""GET a Jupyter REST API endpoint."""
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headers = {"Accept": "application/json"}
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if token:
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headers["Authorization"] = f"token {token}"
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try:
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req = Request(url, headers=headers)
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req = Request(url, headers=_auth_headers(token))
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with urlopen(req, timeout=5) as resp:
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return json.loads(resp.read())
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except (URLError, OSError, json.JSONDecodeError):
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@@ -111,7 +122,7 @@ def _api_get(url: str, token: str = "") -> dict | list | None:
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def _resolve_kernel_id(server_url: str, token: str, notebook_path: str) -> str | None:
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"""Find the kernel_id associated with a notebook via the sessions API."""
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"""Busca el kernel_id de la sesion del notebook via /api/sessions."""
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sessions = _api_get(f"{server_url}/api/sessions", token) or []
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for session in sessions:
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nb = session.get("notebook", session.get("path", {}))
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@@ -122,34 +133,20 @@ def _resolve_kernel_id(server_url: str, token: str, notebook_path: str) -> str |
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return None
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def _resolve_collab_username(server_url: str, token: str) -> str:
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"""Resolve the display name of the active user in Jupyter collaboration.
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Queries /api/me to get the identity Jupyter assigned to the browser user.
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Falls back to 'Anonymous' if unavailable.
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"""
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me = _api_get(f"{server_url}/api/me", token)
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if me:
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identity = me.get("identity", {})
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return identity.get("display_name", "") or identity.get("username", "") or identity.get("name", "Anonymous")
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return "Anonymous"
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# ---------------------------------------------------------------------------
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# Helpers nbformat
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# ---------------------------------------------------------------------------
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def _normalize_code_cell(cell: NotebookNode) -> dict:
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"""Devuelve un dict de celda de codigo con todos los campos requeridos por nbformat.
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Celdas creadas manualmente (no via Jupyter UI) pueden omitir 'outputs' o
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'execution_count'. El modelo CRDT de jupyter_nbmodel_client accede a estos
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campos sin comprobar su existencia, produciendo KeyError al ejecutar.
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Este helper garantiza que el dict tenga la estructura completa.
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"""
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def _new_code_cell(source: str) -> dict:
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"""Crea un dict de celda de codigo nbformat 4.5 con todos los campos."""
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return {
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"id": cell.get("id", ""),
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"id": str(uuid.uuid4()),
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"cell_type": "code",
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"metadata": cell.get("metadata", {}),
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"source": cell.get("source", ""),
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"outputs": cell.get("outputs", []),
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"execution_count": cell.get("execution_count", None),
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"metadata": {},
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"source": source,
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"outputs": [],
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"execution_count": None,
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}
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@@ -175,93 +172,18 @@ def _extract_outputs(raw_outputs: list[dict]) -> list[str]:
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return result
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# ---------------------------------------------------------------------------
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# Modo append (async interno)
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# ---------------------------------------------------------------------------
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def _kernel_outputs_to_nbformat(outputs: list[dict]) -> list[dict]:
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"""Normaliza outputs de KernelClient al esquema nbformat 4.
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async def _async_append_execute(
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notebook_path: str,
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code: str,
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server_url: str,
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token: str,
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) -> dict[str, Any]:
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_create_notebook(notebook_path, server_url, token)
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kernel_id = _ensure_session(server_url, token, notebook_path)
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ws_url = get_jupyter_notebook_websocket_url(
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server_url,
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notebook_path,
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token or None,
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)
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username = _resolve_collab_username(server_url, token)
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async with NbModelClient(ws_url, username=username) as nb:
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await nb.wait_until_synced()
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with KernelClient(server_url=server_url, token=token, kernel_id=kernel_id) as kernel:
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cell_index = nb.add_code_cell(code)
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loop = asyncio.get_event_loop()
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result = await loop.run_in_executor(
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None, partial(nb.execute_cell, cell_index, kernel),
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)
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# Let Y.js propagate changes to other clients (browser)
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await asyncio.sleep(2)
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outputs = _extract_outputs(result.get("outputs", []))
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return {"cell_index": cell_index, "outputs": outputs}
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KernelClient ya devuelve dicts con `output_type`, pero algunos casos (errores,
|
||||
streams) pueden venir con campos sueltos. Esta funcion los pasa tal cual: el
|
||||
cliente actual cumple el esquema; existe como punto de extension futuro.
|
||||
"""
|
||||
return [dict(o) for o in outputs]
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Modo cell (async interno)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
|
||||
async def _async_execute_cell(
|
||||
notebook_path: str,
|
||||
cell_index: int,
|
||||
server_url: str,
|
||||
token: str,
|
||||
) -> dict[str, Any]:
|
||||
kernel_id = _ensure_session(server_url, token, notebook_path)
|
||||
|
||||
ws_url = get_jupyter_notebook_websocket_url(
|
||||
server_url,
|
||||
notebook_path,
|
||||
token or None,
|
||||
)
|
||||
username = _resolve_collab_username(server_url, token)
|
||||
|
||||
async with NbModelClient(ws_url, username=username) as nb:
|
||||
await nb.wait_until_synced()
|
||||
|
||||
# Normalizar la celda antes de ejecutar. Las celdas creadas manualmente
|
||||
# (sin pasar por la UI de Jupyter) pueden carecer de los campos 'outputs'
|
||||
# o 'execution_count' en el modelo CRDT, lo que provoca KeyError dentro
|
||||
# de execute_cell al intentar hacer `del ycell["outputs"][:]`.
|
||||
# Reemplazar la celda via __setitem__ fuerza la re-creacion completa del
|
||||
# mapa CRDT con todos los campos requeridos por nbformat.
|
||||
cell = nb[cell_index]
|
||||
if cell.get("cell_type") == "code" and (
|
||||
"outputs" not in cell or "execution_count" not in cell
|
||||
):
|
||||
nb[cell_index] = _normalize_code_cell(cell)
|
||||
|
||||
with KernelClient(server_url=server_url, token=token, kernel_id=kernel_id) as kernel:
|
||||
loop = asyncio.get_event_loop()
|
||||
result = await loop.run_in_executor(
|
||||
None, partial(nb.execute_cell, cell_index, kernel),
|
||||
)
|
||||
|
||||
await asyncio.sleep(2)
|
||||
|
||||
outputs = _extract_outputs(result.get("outputs", []))
|
||||
return {"cell_index": cell_index, "outputs": outputs}
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# API publica
|
||||
# Modos
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
|
||||
@@ -273,22 +195,31 @@ def jupyter_append_execute(
|
||||
) -> dict[str, Any]:
|
||||
"""Añade una celda de codigo al final del notebook y la ejecuta.
|
||||
|
||||
Tanto el agente como el usuario ven la celda y su output en tiempo real
|
||||
porque la escritura se realiza a traves del protocolo colaborativo de Jupyter.
|
||||
|
||||
Args:
|
||||
notebook_path: Ruta al notebook relativa a la raiz del servidor Jupyter.
|
||||
code: Codigo Python a insertar y ejecutar.
|
||||
server_url: URL del servidor Jupyter; por defecto http://localhost:8888.
|
||||
token: Token de autenticacion del servidor Jupyter.
|
||||
|
||||
Returns:
|
||||
dict con 'cell_index' (indice de la nueva celda) y 'outputs' (lista de strings).
|
||||
|
||||
Raises:
|
||||
Exception: si no se puede conectar al servidor o al kernel.
|
||||
Persiste la celda + outputs a disco via REST `/api/contents`. Jupyter Lab
|
||||
detecta el cambio en el filesystem y lo refleja en el browser (puede pedir
|
||||
'Revert to disk' segun version y conflictos).
|
||||
"""
|
||||
return asyncio.run(_async_append_execute(notebook_path, code, server_url, token))
|
||||
_create_notebook(notebook_path, server_url, token)
|
||||
kernel_id = _ensure_session(server_url, token, notebook_path)
|
||||
|
||||
# Lee notebook, añade celda nueva
|
||||
file_node = _get_notebook_content(notebook_path, server_url, token)
|
||||
nb = file_node["content"]
|
||||
nb.setdefault("cells", [])
|
||||
new_cell = _new_code_cell(code)
|
||||
nb["cells"].append(new_cell)
|
||||
cell_index = len(nb["cells"]) - 1
|
||||
|
||||
# Ejecuta en el kernel del notebook
|
||||
with KernelClient(server_url=server_url, token=token, kernel_id=kernel_id) as kernel:
|
||||
result = kernel.execute(code)
|
||||
|
||||
raw_outputs = result.get("outputs", [])
|
||||
new_cell["outputs"] = _kernel_outputs_to_nbformat(raw_outputs)
|
||||
new_cell["execution_count"] = result.get("execution_count")
|
||||
|
||||
_put_notebook_content(notebook_path, server_url, token, nb)
|
||||
return {"cell_index": cell_index, "outputs": _extract_outputs(raw_outputs)}
|
||||
|
||||
|
||||
def jupyter_execute_cell(
|
||||
@@ -297,22 +228,32 @@ def jupyter_execute_cell(
|
||||
server_url: str = "http://localhost:8888",
|
||||
token: str = "",
|
||||
) -> dict[str, Any]:
|
||||
"""Ejecuta una celda existente del notebook por indice.
|
||||
"""Ejecuta una celda existente por indice y persiste sus outputs."""
|
||||
kernel_id = _ensure_session(server_url, token, notebook_path)
|
||||
|
||||
Args:
|
||||
notebook_path: Ruta al notebook relativa a la raiz del servidor Jupyter.
|
||||
cell_index: Indice de la celda a ejecutar (0-based).
|
||||
server_url: URL del servidor Jupyter; por defecto http://localhost:8888.
|
||||
token: Token de autenticacion del servidor Jupyter.
|
||||
file_node = _get_notebook_content(notebook_path, server_url, token)
|
||||
nb = file_node["content"]
|
||||
cells = nb.get("cells", [])
|
||||
if cell_index < 0 or cell_index >= len(cells):
|
||||
raise IndexError(f"cell_index {cell_index} fuera de rango (notebook tiene {len(cells)} celdas)")
|
||||
|
||||
Returns:
|
||||
dict con 'cell_index' y 'outputs' (lista de strings).
|
||||
cell = cells[cell_index]
|
||||
if cell.get("cell_type") != "code":
|
||||
raise ValueError(f"La celda {cell_index} no es de codigo (cell_type={cell.get('cell_type')!r})")
|
||||
|
||||
Raises:
|
||||
IndexError: si cell_index esta fuera de rango.
|
||||
Exception: si no se puede conectar al servidor o al kernel.
|
||||
"""
|
||||
return asyncio.run(_async_execute_cell(notebook_path, cell_index, server_url, token))
|
||||
source = cell.get("source", "")
|
||||
if isinstance(source, list):
|
||||
source = "".join(source)
|
||||
|
||||
with KernelClient(server_url=server_url, token=token, kernel_id=kernel_id) as kernel:
|
||||
result = kernel.execute(source)
|
||||
|
||||
raw_outputs = result.get("outputs", [])
|
||||
cell["outputs"] = _kernel_outputs_to_nbformat(raw_outputs)
|
||||
cell["execution_count"] = result.get("execution_count")
|
||||
|
||||
_put_notebook_content(notebook_path, server_url, token, nb)
|
||||
return {"cell_index": cell_index, "outputs": _extract_outputs(raw_outputs)}
|
||||
|
||||
|
||||
def jupyter_kernel_execute(
|
||||
@@ -320,24 +261,9 @@ def jupyter_kernel_execute(
|
||||
server_url: str = "http://localhost:8888",
|
||||
token: str = "",
|
||||
) -> dict[str, Any]:
|
||||
"""Ejecuta codigo directamente en el kernel sin modificar ningun notebook.
|
||||
|
||||
Util para consultas rapidas, inspeccion de variables, comprobaciones de estado.
|
||||
|
||||
Args:
|
||||
code: Codigo Python a ejecutar en el kernel activo.
|
||||
server_url: URL del servidor Jupyter; por defecto http://localhost:8888.
|
||||
token: Token de autenticacion del servidor Jupyter.
|
||||
|
||||
Returns:
|
||||
dict con 'outputs' (lista de strings) y 'status' ('ok' o 'error').
|
||||
|
||||
Raises:
|
||||
Exception: si no se puede conectar al servidor o al kernel.
|
||||
"""
|
||||
"""Ejecuta codigo directo en el kernel sin tocar ningun notebook."""
|
||||
with KernelClient(server_url=server_url, token=token) as kernel:
|
||||
result = kernel.execute(code)
|
||||
|
||||
outputs = _extract_outputs(result.get("outputs", []))
|
||||
return {"outputs": outputs, "status": result.get("status", "unknown")}
|
||||
|
||||
@@ -350,26 +276,21 @@ if __name__ == "__main__":
|
||||
import argparse
|
||||
import sys
|
||||
|
||||
parser = argparse.ArgumentParser(
|
||||
description="Ejecuta codigo en kernels de Jupyter",
|
||||
)
|
||||
parser = argparse.ArgumentParser(description="Ejecuta codigo en kernels de Jupyter")
|
||||
sub = parser.add_subparsers(dest="command", required=True)
|
||||
|
||||
# append
|
||||
p_append = sub.add_parser("append", help="Añade celda al notebook y la ejecuta")
|
||||
p_append.add_argument("notebook", help="Ruta al notebook relativa al servidor")
|
||||
p_append.add_argument("code", help="Codigo a insertar y ejecutar")
|
||||
p_append.add_argument("--server", default="http://localhost:8888")
|
||||
p_append.add_argument("--token", default="")
|
||||
|
||||
# cell
|
||||
p_cell = sub.add_parser("cell", help="Ejecuta celda existente por indice")
|
||||
p_cell.add_argument("notebook", help="Ruta al notebook relativa al servidor")
|
||||
p_cell.add_argument("index", type=int, help="Indice de la celda (0-based)")
|
||||
p_cell.add_argument("--server", default="http://localhost:8888")
|
||||
p_cell.add_argument("--token", default="")
|
||||
|
||||
# kernel
|
||||
p_kernel = sub.add_parser("kernel", help="Ejecuta codigo en el kernel sin tocar notebook")
|
||||
p_kernel.add_argument("code", help="Codigo a ejecutar")
|
||||
p_kernel.add_argument("--server", default="http://localhost:8888")
|
||||
|
||||
@@ -0,0 +1,188 @@
|
||||
"""Tests para jupyter_exec.
|
||||
|
||||
Cubre:
|
||||
- Que `_notebook_exists` usa GET (regresion del bug 0050: HEAD daba 405).
|
||||
- Que `_create_notebook` no toca el servidor si el notebook ya existe.
|
||||
- E2E contra un Jupyter Lab vivo si esta disponible (skip si no).
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import json
|
||||
import os
|
||||
import socket
|
||||
import subprocess
|
||||
import sys
|
||||
import time
|
||||
import urllib.request
|
||||
from pathlib import Path
|
||||
from unittest.mock import MagicMock, patch
|
||||
|
||||
import pytest
|
||||
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "..", ".."))
|
||||
|
||||
from python.functions.notebook import jupyter_exec as jx
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Tests unitarios (regresion del bug HEAD/GET)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
|
||||
def _http_response_mock(body: bytes = b"{}", status: int = 200) -> MagicMock:
|
||||
resp = MagicMock()
|
||||
resp.read.return_value = body
|
||||
resp.__enter__ = lambda self: self
|
||||
resp.__exit__ = lambda self, *a: False
|
||||
resp.status = status
|
||||
return resp
|
||||
|
||||
|
||||
def test_notebook_exists_uses_get_not_head():
|
||||
"""Regresion 0050: HEAD devuelve 405 en /api/contents; debe usar GET."""
|
||||
captured = {}
|
||||
|
||||
def fake_urlopen(req, timeout):
|
||||
captured["method"] = req.get_method()
|
||||
captured["url"] = req.full_url
|
||||
return _http_response_mock(b'{"name":"x.ipynb"}')
|
||||
|
||||
with patch.object(jx, "urlopen", side_effect=fake_urlopen):
|
||||
ok = jx._notebook_exists("x.ipynb", "http://srv", "")
|
||||
assert ok is True
|
||||
assert captured["method"] == "GET"
|
||||
assert "content=0" in captured["url"]
|
||||
|
||||
|
||||
def test_notebook_exists_returns_false_on_404():
|
||||
err = urllib.request.HTTPError(url="x", code=404, msg="nope", hdrs=None, fp=None)
|
||||
with patch.object(jx, "urlopen", side_effect=err):
|
||||
assert jx._notebook_exists("x.ipynb", "http://srv", "") is False
|
||||
|
||||
|
||||
def test_create_notebook_skips_when_exists():
|
||||
with patch.object(jx, "_notebook_exists", return_value=True), \
|
||||
patch.object(jx, "urlopen") as mock_open:
|
||||
jx._create_notebook("x.ipynb", "http://srv", "")
|
||||
mock_open.assert_not_called()
|
||||
|
||||
|
||||
def test_new_code_cell_has_required_fields():
|
||||
cell = jx._new_code_cell("print(42)")
|
||||
assert cell["cell_type"] == "code"
|
||||
assert cell["source"] == "print(42)"
|
||||
assert cell["outputs"] == []
|
||||
assert cell["execution_count"] is None
|
||||
assert isinstance(cell["id"], str) and len(cell["id"]) > 0
|
||||
assert cell["metadata"] == {}
|
||||
|
||||
|
||||
def test_extract_outputs_handles_streams_and_results():
|
||||
raw = [
|
||||
{"output_type": "stream", "name": "stdout", "text": "hola\n"},
|
||||
{"output_type": "execute_result", "data": {"text/plain": "42"}},
|
||||
{"output_type": "error", "traceback": ["E1", "E2"]},
|
||||
]
|
||||
out = jx._extract_outputs(raw)
|
||||
assert out == ["hola", "42", "E1\nE2"]
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# E2E (requiere Jupyter Lab corriendo)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
|
||||
JUPYTER_VENV_BIN = Path("/home/lucas/fn_registry/analysis/pruebas_jupyter/.venv/bin")
|
||||
|
||||
|
||||
def _free_port() -> int:
|
||||
with socket.socket(socket.AF_INET, socket.SOCK_STREAM) as s:
|
||||
s.bind(("127.0.0.1", 0))
|
||||
return s.getsockname()[1]
|
||||
|
||||
|
||||
def _wait_http(url: str, timeout: float = 10.0) -> bool:
|
||||
end = time.time() + timeout
|
||||
while time.time() < end:
|
||||
try:
|
||||
with urllib.request.urlopen(url, timeout=1):
|
||||
return True
|
||||
except OSError:
|
||||
time.sleep(0.3)
|
||||
return False
|
||||
|
||||
|
||||
@pytest.fixture(scope="module")
|
||||
def jupyter_server(tmp_path_factory):
|
||||
"""Arranca un Jupyter Lab en puerto libre. Skip si las deps no estan."""
|
||||
if not (JUPYTER_VENV_BIN / "jupyter-lab").exists():
|
||||
pytest.skip("Jupyter Lab no disponible en pruebas_jupyter venv")
|
||||
|
||||
workdir = tmp_path_factory.mktemp("jupyter_e2e")
|
||||
(workdir / "notebooks").mkdir()
|
||||
port = _free_port()
|
||||
|
||||
proc = subprocess.Popen(
|
||||
[
|
||||
str(JUPYTER_VENV_BIN / "jupyter-lab"),
|
||||
f"--port={port}",
|
||||
"--no-browser",
|
||||
"--ServerApp.token=",
|
||||
"--ServerApp.password=",
|
||||
"--ServerApp.disable_check_xsrf=True",
|
||||
f"--ServerApp.root_dir={workdir}",
|
||||
"--collaborative",
|
||||
],
|
||||
stdout=subprocess.DEVNULL,
|
||||
stderr=subprocess.DEVNULL,
|
||||
)
|
||||
|
||||
server_url = f"http://localhost:{port}"
|
||||
if not _wait_http(f"{server_url}/api"):
|
||||
proc.terminate()
|
||||
pytest.skip("Jupyter Lab no levantó a tiempo")
|
||||
|
||||
yield server_url, workdir
|
||||
|
||||
proc.terminate()
|
||||
try:
|
||||
proc.wait(timeout=5)
|
||||
except subprocess.TimeoutExpired:
|
||||
proc.kill()
|
||||
|
||||
|
||||
def test_e2e_append_executes_and_persists(jupyter_server):
|
||||
server_url, workdir = jupyter_server
|
||||
result = jx.jupyter_append_execute(
|
||||
"notebooks/test.ipynb", "z = 21 * 2; print(z)", server_url=server_url,
|
||||
)
|
||||
assert result["cell_index"] == 0
|
||||
assert result["outputs"] == ["42"]
|
||||
|
||||
nb = json.loads((workdir / "notebooks" / "test.ipynb").read_text())
|
||||
assert len(nb["cells"]) == 1
|
||||
assert nb["cells"][0]["execution_count"] == 1
|
||||
|
||||
|
||||
def test_e2e_append_twice_increments_index(jupyter_server):
|
||||
server_url, _ = jupyter_server
|
||||
jx.jupyter_append_execute("notebooks/twice.ipynb", "a = 1", server_url=server_url)
|
||||
r2 = jx.jupyter_append_execute("notebooks/twice.ipynb", "print(a + 1)", server_url=server_url)
|
||||
assert r2["cell_index"] == 1
|
||||
assert r2["outputs"] == ["2"]
|
||||
|
||||
|
||||
def test_e2e_cell_executes_existing(jupyter_server):
|
||||
server_url, _ = jupyter_server
|
||||
jx.jupyter_append_execute("notebooks/cell.ipynb", "v = 10", server_url=server_url)
|
||||
jx.jupyter_append_execute("notebooks/cell.ipynb", "print(v * 5)", server_url=server_url)
|
||||
r = jx.jupyter_execute_cell("notebooks/cell.ipynb", 1, server_url=server_url)
|
||||
assert r["outputs"] == ["50"]
|
||||
|
||||
|
||||
def test_e2e_kernel_mode(jupyter_server):
|
||||
server_url, _ = jupyter_server
|
||||
r = jx.jupyter_kernel_execute("print('hello kernel')", server_url=server_url)
|
||||
assert r["status"] == "ok"
|
||||
assert r["outputs"] == ["hello kernel"]
|
||||
Reference in New Issue
Block a user