Compare commits
21 Commits
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| fa8db01059 | |||
| 048781df3f | |||
| a421f13d2e | |||
| 13c82be780 |
@@ -34,6 +34,7 @@ from .theils_u import theils_u
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from .correlation_ratio import correlation_ratio
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from .mutual_info_columns import mutual_info_columns
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from .infer_fk_containment_duckdb import infer_fk_containment_duckdb
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from .detect_declared_keys_duckdb import detect_declared_keys_duckdb
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from .build_join_graph import build_join_graph
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from .association_matrix import association_matrix
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from .correlation_matrix_duckdb import correlation_matrix_duckdb
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@@ -63,14 +64,17 @@ from .exploratory_caveats import exploratory_caveats
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from .render_eda_pdf import render_eda_pdf, render_eda_pdf_relational
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from .render_automatic_eda_pdf import render_automatic_eda_pdf
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from .render_automatic_eda_pptx import render_automatic_eda_pptx
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from .render_automatic_eda_markdown import render_automatic_eda_markdown
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from .detect_time_column import detect_time_column
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from .extract_timeseries_raw import extract_timeseries_raw
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from .build_eda_render_ctx import build_eda_render_ctx
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from .profile_datetime import profile_datetime
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from .resample_timeseries import resample_timeseries
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from .add_pdf_internal_links import add_pdf_internal_links
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from .suggest_intratable_fk_candidates import suggest_intratable_fk_candidates
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__all__ = [
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"suggest_intratable_fk_candidates",
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"detect_time_column",
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"extract_timeseries_raw",
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"build_eda_render_ctx",
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@@ -79,6 +83,7 @@ __all__ = [
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"resample_timeseries",
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"render_automatic_eda_pdf",
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"render_automatic_eda_pptx",
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"render_automatic_eda_markdown",
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"decode_qr_image",
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"adf_kpss_stationarity",
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"acf_pacf",
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@@ -97,6 +102,7 @@ __all__ = [
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"correlation_ratio",
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"mutual_info_columns",
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"infer_fk_containment_duckdb",
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"detect_declared_keys_duckdb",
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"build_join_graph",
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"association_matrix",
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"correlation_matrix_duckdb",
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@@ -36,6 +36,7 @@ from .model import ( # noqa: F401
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from .chapters_registry import CHAPTER_ORDER, build_chapter, build_document # noqa: F401
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from .render_pdf_impl import render_pdf # noqa: F401
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from .render_pptx_impl import render_pptx # noqa: F401
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from .render_md_impl import render_md # noqa: F401
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__all__ = [
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"ENGINE_NAME",
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@@ -60,4 +61,5 @@ __all__ = [
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"build_document",
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"render_pdf",
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"render_pptx",
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"render_md",
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]
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@@ -89,6 +89,35 @@ _DEF_MAX_CARD = 20
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_DEF_MAX_MEASURES = 4
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_DEF_TOP_N = 12
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# Glossary terms this chapter explains. Both appear in the always-rendered intro,
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# so they are registered and marked clickable whenever a collector is in ctx —
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# the canonical two-step pattern (see ``cat_distr``): ``glossary.add(key, label,
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# definition)`` + the inline span ``[[term:KEY]]texto[[/term]]`` in a Markdown
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# block. Mapping key -> (label, definition).
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_TERM_DEFS = {
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"groupby": (
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"Agrupación (split-apply-combine)",
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"Operación de agrupación (group by): parte la tabla en grupos según los "
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"valores de una columna categórica, aplica un cálculo (conteo, media, "
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"mediana…) dentro de cada grupo y combina los resultados en una tabla "
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"resumen. Es el patrón split-apply-combine."),
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"pivot_table": (
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"Tabla dinámica (pivot)",
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"Tabla dinámica que cruza dos variables categóricas — una en las filas y "
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"otra en las columnas — y rellena cada celda con un agregado (media, "
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"suma…) de una medida numérica. Resume de un vistazo cómo interactúan las "
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"dos categóricas sobre esa medida."),
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}
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def _term(mark: bool, key: str, text: str) -> str:
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"""Wrap ``text`` as a clickable glossary span when ``mark`` is True.
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The visible text is identical with or without the marker (the renderers strip
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it), so wrapping never changes line layout — it only adds the link.
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"""
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return f"[[term:{key}]]{text}[[/term]]" if mark else text
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# --------------------------------------------------------------------------- #
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# Formatting helpers (mirror the other chapters' defensive style).
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@@ -525,15 +554,18 @@ def _sections_live(profile: dict, ctx: dict, candidates: dict) -> list:
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# --------------------------------------------------------------------------- #
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# Entry point.
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# --------------------------------------------------------------------------- #
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def _intro_blocks() -> list:
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def _intro_blocks(gloss=None, mark_term: bool = False) -> list:
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if gloss is not None:
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for key, (label, definition) in _TERM_DEFS.items():
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gloss.add(key, label, definition)
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t_groupby = _term(mark_term, "groupby", "**por grupos** (split-apply-combine)")
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t_pivot = _term(mark_term, "pivot_table", "**tablas dinámicas** (pivot)")
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text = (
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"Este capítulo analiza la tabla **por grupos** (split-apply-combine): "
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"elige las columnas categóricas más informativas — por su cardinalidad "
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"y relevancia, no todas contra todas, para no inflar comparaciones "
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"espurias — y resume las variables numéricas dentro de cada grupo "
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"(conteo, media, mediana, desviación). Las **tablas dinámicas** (pivot) "
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"cruzan dos categóricas sobre una medida, y los **gráficos de barras** "
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"(siempre desde cero) comparan los grupos de un vistazo."
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f"Este capítulo analiza la tabla {t_groupby}: elige las columnas "
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"categóricas más informativas (por cardinalidad y relevancia, no todas "
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"contra todas) y resume las variables numéricas dentro de cada grupo "
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f"(conteo, media, mediana, desviación). Se añaden {t_pivot} y "
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"**gráficos de barras** (siempre desde cero) para comparar los grupos."
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)
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return [model.Heading(text=CHAPTER_TITLE, level=1),
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model.Markdown(text=text)]
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@@ -556,13 +588,21 @@ def build_agregacion(profile: dict, ctx: dict):
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if not isinstance(profile, dict):
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return None
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# Shared glossary collector: groupby + pivot_table live in the always-present
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# intro, so they are registered + marked there. Degrades silently (mark_term
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# False) when no collector is in ctx (standalone render).
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glossary = ctx.get("glossary")
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gloss = glossary if isinstance(glossary, model.GlossaryCollector) else None
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mark_term = gloss is not None
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# Pre-computed results take precedence (offline / tests / forward-compat).
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pre = ctx.get("aggregations")
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if _is_dict(pre) and (pre.get("groupby") or pre.get("pivots")):
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sections = _sections_from_precomputed(pre)
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if not sections:
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return None
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blocks = _intro_blocks() + sections + _insights_section(ctx)
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blocks = (_intro_blocks(gloss, mark_term) + sections
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+ _insights_section(ctx))
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return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
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version=CHAPTER_VERSION, blocks=blocks)
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@@ -583,10 +623,11 @@ def build_agregacion(profile: dict, ctx: dict):
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"crudos. Pasa ctx['db_path'] + ctx['table'] (para el cálculo "
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"push-down en DuckDB) o ctx['aggregations'] ya precalculado. "
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f"Columnas categóricas candidatas: {keys or '—'}.")
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blocks = _intro_blocks() + [note] + _insights_section(ctx)
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blocks = (_intro_blocks(gloss, mark_term) + [note]
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+ _insights_section(ctx))
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return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
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version=CHAPTER_VERSION, blocks=blocks)
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blocks = _intro_blocks() + sections + _insights_section(ctx)
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blocks = _intro_blocks(gloss, mark_term) + sections + _insights_section(ctx)
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return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
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version=CHAPTER_VERSION, blocks=blocks)
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@@ -254,3 +254,25 @@ def test_anti_corte_muchos_grupos_y_texto_largo():
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# First, middle and last words of the long paragraph all present.
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for i in (0, 60, 119):
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assert f"palabra{i}" in txt
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def test_glosario_engancha_groupby_y_pivot():
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"""Mejora 4b: la agrupación (split-apply-combine) y la tabla dinámica (pivot)
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se registran en el colector compartido y se marcan clicables en el cuerpo.
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Sin colector en ctx, el capítulo degrada y no marca nada."""
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from datascience.automatic_eda.model import GlossaryCollector
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g = GlossaryCollector()
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ctx = dict(_ctx_precomputed())
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ctx["glossary"] = g
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ch = build_agregacion(_profile(), ctx)
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assert ch is not None
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keys = {t["key"] for t in g.terms()}
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assert {"groupby", "pivot_table"} <= keys
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body = " ".join(b.text for b in ch.blocks if b.kind == "markdown")
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assert "[[term:groupby]]" in body and "[[term:pivot_table]]" in body
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# Sin colector: degrada limpio (ningún marcador en el cuerpo).
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ch2 = build_agregacion(_profile(), _ctx_precomputed())
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body2 = " ".join(b.text for b in ch2.blocks if b.kind == "markdown")
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assert "[[term:" not in body2
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@@ -42,7 +42,11 @@ from __future__ import annotations
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from .. import model
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CHAPTER_VERSION = "1.0.0"
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# 1.1.0: drop the duplicated section labels — the dictionary and PII DataTables
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# no longer carry a ``title`` (the section Heading labels them once, per the
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# OVERVIEW pattern in the contract). The data-dictionary column already reads
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# "Significado de negocio".
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CHAPTER_VERSION = "1.1.0"
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CHAPTER_ID = "analisis_llm"
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CHAPTER_TITLE = "Análisis LLM"
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@@ -118,6 +122,11 @@ def _dictionary_block(llm: dict):
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Columns: Columna / Descripción / Significado de negocio / Unidad. The
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paginator splits this by rows repeating the header and wraps long cells, so a
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long dictionary (many columns) never gets cut.
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||||
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The block carries **no** ``title``: the section is labelled once by the
|
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``Heading`` that ``build_analisis_llm`` appends right before it (the canonical
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OVERVIEW pattern, contract §8). Giving the table its own ``title`` too would
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print "Diccionario de datos" twice in a row.
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"""
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entries = llm.get("dictionary")
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if not isinstance(entries, (list, tuple)) or not entries:
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@@ -137,7 +146,7 @@ def _dictionary_block(llm: dict):
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])
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if not rows:
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return None
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return model.DataTable(header=header, rows=rows, title="Diccionario de datos")
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return model.DataTable(header=header, rows=rows)
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def _analyses_blocks(llm: dict) -> list:
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@@ -159,7 +168,12 @@ def _cleaning_blocks(llm: dict) -> list:
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def _pii_block(llm: dict):
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"""DataTable for PII/GDPR findings, or None if absent/empty."""
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"""DataTable for PII/GDPR findings, or None if absent/empty.
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|
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Like the dictionary block, it carries **no** ``title`` (the ``Heading`` in
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``build_analisis_llm`` labels the section once); it keeps its ``note`` with
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the orientative-detection caveat, which the renderers print under the table.
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"""
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entries = llm.get("pii")
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if not isinstance(entries, (list, tuple)) or not entries:
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return None
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@@ -176,7 +190,7 @@ def _pii_block(llm: dict):
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if not rows:
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return None
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return model.DataTable(
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header=header, rows=rows, title="Datos personales (PII / RGPD)",
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header=header, rows=rows,
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note="detección automática orientativa — revisar antes de tratar los datos")
|
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|
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@@ -24,7 +24,7 @@ from pptx import Presentation
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from datascience.automatic_eda.chapters.analisis_llm import (
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build_analisis_llm, CHAPTER_VERSION)
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from datascience.automatic_eda.chapters_registry import build_document
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from datascience.automatic_eda.model import Chapter, DataTable
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from datascience.automatic_eda.model import Chapter, DataTable, Heading
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from datascience.render_automatic_eda_pdf import render_automatic_eda_pdf
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from datascience.render_automatic_eda_pptx import render_automatic_eda_pptx
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|
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@@ -117,6 +117,45 @@ def test_golden_build_y_render_pdf_pptx():
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assert "DESCTOKEN" in ptx
|
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|
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|
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def test_sin_rotulos_duplicados_y_significado_de_negocio():
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"""The dictionary / PII sections must be labelled ONCE.
|
||||
|
||||
Regression for the duplicated 'Diccionario de datos' and 'Datos personales
|
||||
(PII / RGPD)' headings (each section used to print its label twice: a Heading
|
||||
plus the DataTable's own title). The fix drops the DataTable title and keeps
|
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a single Heading — the OVERVIEW pattern. The data-dictionary column header is
|
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also pinned to the exact text 'Significado de negocio'.
|
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"""
|
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ch = build_analisis_llm(_profile(), {})
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assert ch is not None
|
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|
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# Structure: section labels come from Headings; tables carry no title.
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headings = [b.text for b in ch.blocks if isinstance(b, Heading)]
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assert headings.count("Diccionario de datos") == 1
|
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assert headings.count("Datos personales (PII / RGPD)") == 1
|
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for b in ch.blocks:
|
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if isinstance(b, DataTable):
|
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assert not b.title, f"DataTable should not duplicate the label: {b.title!r}"
|
||||
|
||||
# The data dictionary's third column reads exactly 'Significado de negocio'.
|
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dicts = [b for b in ch.blocks if isinstance(b, DataTable) and "Descripción" in b.header]
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assert dicts, "expected the data-dictionary DataTable"
|
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assert dicts[0].header == ["Columna", "Descripción", "Significado de negocio", "Unidad"]
|
||||
|
||||
# The PII table keeps its orientative-detection note.
|
||||
pii = [b for b in ch.blocks if isinstance(b, DataTable) and b.header == ["Columna", "Tipo", "Severidad"]]
|
||||
assert pii and pii[0].note and "orientativa" in pii[0].note
|
||||
|
||||
# Render: each label appears exactly once across the whole document (the only
|
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# 'Diccionario de datos' / 'Datos personales' producer is this chapter).
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out_pdf = os.path.join(d, "eda.pdf")
|
||||
render_automatic_eda_pdf(_profile(), out_pdf, {"title": "EDA — ventas"})
|
||||
txt = _pdf_text(out_pdf)
|
||||
assert txt.count("Diccionario de datos") == 1
|
||||
assert txt.count("Datos personales") == 1
|
||||
|
||||
|
||||
def test_orden_capitulo_junto_a_overview():
|
||||
chapters = build_document(_profile(), {})
|
||||
ids = [c.id for c in chapters]
|
||||
|
||||
@@ -1,22 +1,27 @@
|
||||
"""Data-quality chapter (CALIDAD) for AutomaticEDA.
|
||||
|
||||
Builds the quality chapter from a ``TableProfile`` of the ``eda`` group. The
|
||||
chapter answers, in Spanish and as tables, the three things the user asked for:
|
||||
chapter implements the quality model of report 2046:
|
||||
|
||||
1. **En qué se basa la calidad** — an intro paragraph explaining the criteria and
|
||||
their weights (completeness, validity, consistency) before any number, plus a
|
||||
table-level summary (global score and aggregates).
|
||||
1. **En qué se basa la calidad** — a concise intro naming the two scored
|
||||
dimensions and their weights (completitud 60%, validez 40%) plus the
|
||||
table-level row uniqueness, BEFORE any number, and stating that outliers are
|
||||
reported as observations and do **not** lower the score. The criteria terms
|
||||
(calidad de datos, completitud, validez, unicidad de registro) are hooked
|
||||
into the shared glossary as clickable jumps; their full definitions live in
|
||||
the GLOSARIO chapter, not inline here.
|
||||
2. **Scores por columna** — a table with, per column, the total quality score and
|
||||
its breakdown into completeness / validity / consistency.
|
||||
3. **Problemas en español** — a second table listing, per column, the readable
|
||||
issues in Spanish (kept separate from the type ``flags``).
|
||||
its breakdown into completeness / validity (no consistency dimension).
|
||||
3. **Problemas de calidad** — a table listing ONLY real quality defects
|
||||
(nulls, empty cells, values not conforming to their type/semantics).
|
||||
4. **Observaciones analíticas** — a SEPARATE table for outliers, constant
|
||||
columns, high-cardinality ids and strong skew, with an explicit note that
|
||||
these do not affect the score.
|
||||
|
||||
The breakdown and the issues are NOT recomputed here: they come from the registry
|
||||
function ``column_quality_score`` (group ``eda``), which already derives
|
||||
``{score, completeness, validity, consistency, issues}`` from the ColumnProfile.
|
||||
This chapter is render-only — it consumes that function and lays the result out
|
||||
as model blocks; the renderers paginate tables (splitting by rows, repeating the
|
||||
header) and wrap long cells so nothing is ever cut.
|
||||
The breakdown, issues and observations are NOT recomputed here: they come from
|
||||
the registry function ``column_quality_score`` (group ``eda``), which derives
|
||||
``{score, completeness, validity, dimensions, applicable, issues,
|
||||
observations}`` from the ColumnProfile. This chapter is render-only.
|
||||
|
||||
Contract: build_<id>(profile, ctx) -> Chapter | None ; CHAPTER_VERSION = "x.y.z".
|
||||
"""
|
||||
@@ -33,28 +38,47 @@ try: # pragma: no cover - import wiring
|
||||
except Exception: # noqa: BLE001 - never let an import error abort the document.
|
||||
_column_quality_score = None
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
CHAPTER_VERSION = "2.0.0"
|
||||
CHAPTER_ID = "calidad"
|
||||
CHAPTER_TITLE = "Calidad"
|
||||
|
||||
# Weights mirror column_quality_score: completeness 0.5, validity 0.3,
|
||||
# consistency 0.2. Kept here only to render the human explanation; the actual
|
||||
# numbers always come from the function so the two never drift in computation.
|
||||
_CRITERIA_INTRO = (
|
||||
"La calidad de cada columna es un score de 0 a 100 que combina tres "
|
||||
"criterios, cada uno con un peso:\n\n"
|
||||
"- **Completitud (peso 50%)**: proporción de valores presentes (sin nulos "
|
||||
"ni vacíos). Una columna con muchos nulos baja de score.\n"
|
||||
"- **Validez (peso 30%)**: los valores son coherentes con su tipo y rango "
|
||||
"esperado (penaliza outliers y semánticas declaradas que no coinciden).\n"
|
||||
"- **Consistencia (peso 20%)**: la columna aporta información útil (penaliza "
|
||||
"columnas constantes o identificadores de cardinalidad muy alta).\n\n"
|
||||
"Score = 100 × (0,5·completitud + 0,3·validez + 0,2·consistencia). "
|
||||
"Los problemas detectados por columna se listan en español más abajo."
|
||||
)
|
||||
# Glossary terms this chapter explains (report 2046 §6). Registered in the shared
|
||||
# collector and marked clickable on their first appearance (contract §11.1).
|
||||
_TERMS = {
|
||||
"calidad_datos": (
|
||||
"Calidad de datos (score 0-100)",
|
||||
"Mide hasta qué punto los datos están presentes y son utilizables tal "
|
||||
"cual, no si son «buenos para el análisis». Se compone solo de "
|
||||
"dimensiones medibles automáticamente desde el perfil de la tabla, sin "
|
||||
"fuente externa de verdad: completitud (60%), validez (40%, cuando es "
|
||||
"medible) y, a nivel de tabla, unicidad de registro. Los valores "
|
||||
"atípicos NO bajan la calidad: se listan aparte como observaciones.",
|
||||
),
|
||||
"completitud": (
|
||||
"Completitud",
|
||||
"Proporción de valores realmente presentes en una columna (1 − % de "
|
||||
"nulos; en texto, las celdas vacías también cuentan como faltantes). Los "
|
||||
"nulos y vacíos bajan el score porque falta información que debería "
|
||||
"estar. Pesa el 60% del score de columna.",
|
||||
),
|
||||
"validez": (
|
||||
"Validez",
|
||||
"Proporción de valores que encajan con su tipo o formato esperado: un "
|
||||
"número que parsea, una fecha legible, un email con forma de email. Los "
|
||||
"valores que no parsean a su tipo bajan el score. Si la columna es texto "
|
||||
"libre sin formato esperado, la validez no se puede medir y el score se "
|
||||
"basa solo en la completitud. Pesa el 40% del score cuando es medible.",
|
||||
),
|
||||
"unicidad_registro": (
|
||||
"Unicidad de registro",
|
||||
"A nivel de tabla, las filas duplicadas restan calidad al conjunto "
|
||||
"(1 − % de filas duplicadas). Es distinta de que una columna no-clave "
|
||||
"repita valores, que no es un defecto de calidad.",
|
||||
),
|
||||
}
|
||||
|
||||
# Cap for the joined issues cell so a single row never grows taller than a page;
|
||||
# the remainder is summarized as "(+N más)" instead of being silently dropped.
|
||||
# Cap for the joined cell so a single row never grows taller than a page; the
|
||||
# remainder is summarized as "(+N más)" instead of being silently dropped.
|
||||
_ISSUES_MAXLEN = 160
|
||||
|
||||
|
||||
@@ -82,12 +106,19 @@ def _fmt_unit_pct(value) -> str:
|
||||
return str(value)
|
||||
|
||||
|
||||
def _fmt_validity(value) -> str:
|
||||
"""Validity is ``None`` when not applicable: show ``n/a`` not a fake 0%."""
|
||||
if value is None:
|
||||
return "n/a"
|
||||
return _fmt_unit_pct(value)
|
||||
|
||||
|
||||
def _quality_of(col: dict) -> dict:
|
||||
"""Return ``{score, completeness, validity, consistency, issues}`` for a column.
|
||||
"""Return the quality dict for a column.
|
||||
|
||||
Uses the registry ``column_quality_score`` when available; otherwise falls
|
||||
back to the per-column ``quality_score`` already in the profile (number only,
|
||||
empty breakdown/issues). Never raises.
|
||||
empty breakdown/issues/observations). Never raises.
|
||||
"""
|
||||
if not isinstance(col, dict):
|
||||
col = {}
|
||||
@@ -98,26 +129,25 @@ def _quality_of(col: dict) -> dict:
|
||||
return res
|
||||
except Exception: # noqa: BLE001 - degrade instead of aborting.
|
||||
pass
|
||||
# Fallback: only the final score is available pre-computed in the profile.
|
||||
return {
|
||||
"score": col.get("quality_score"),
|
||||
"completeness": None,
|
||||
"validity": None,
|
||||
"consistency": None,
|
||||
"issues": [],
|
||||
"observations": [],
|
||||
}
|
||||
|
||||
|
||||
def _join_issues(issues) -> str:
|
||||
"""Join Spanish issue strings into one cell, truncating overly long lists.
|
||||
def _join_cells(items) -> str:
|
||||
"""Join Spanish strings into one cell, truncating overly long lists.
|
||||
|
||||
The renderer wraps cell text, but a column with many long issues could make a
|
||||
single row taller than a whole page; cap the length and append ``(+N más)``
|
||||
so the count of hidden issues is honest rather than silently lost.
|
||||
The renderer wraps cell text, but a column with many long entries could make
|
||||
a single row taller than a whole page; cap the length and append ``(+N más)``
|
||||
so the count of hidden entries is honest rather than silently lost.
|
||||
"""
|
||||
if not isinstance(issues, (list, tuple)) or not issues:
|
||||
if not isinstance(items, (list, tuple)) or not items:
|
||||
return ""
|
||||
parts = [model._safe_str(i).strip() for i in issues]
|
||||
parts = [model._safe_str(i).strip() for i in items]
|
||||
parts = [p for p in parts if p]
|
||||
if not parts:
|
||||
return ""
|
||||
@@ -142,6 +172,33 @@ def _columns_with_quality(profile: dict):
|
||||
yield c, _quality_of(c)
|
||||
|
||||
|
||||
def _fmt_unit_pct_or_pct(value) -> str:
|
||||
"""Format a value that may be a 0-1 fraction or an already-0-100 percentage."""
|
||||
try:
|
||||
num = float(value)
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
if num != num: # NaN
|
||||
return "—"
|
||||
pct = num * 100 if num <= 1.0 else num
|
||||
text = f"{pct:.1f}".rstrip("0").rstrip(".")
|
||||
return f"{text}%"
|
||||
|
||||
|
||||
def _row_uniqueness(profile: dict):
|
||||
"""Return row uniqueness (1 - duplicate_pct) in [0,1], or None if unknown."""
|
||||
dup = profile.get("duplicate_pct")
|
||||
if dup is None:
|
||||
return None
|
||||
try:
|
||||
d = float(dup)
|
||||
except (TypeError, ValueError):
|
||||
return None
|
||||
if d > 1.0: # tolerate a 0-100 scale
|
||||
d = d / 100.0
|
||||
return max(0.0, min(1.0, 1.0 - d))
|
||||
|
||||
|
||||
def _summary_block(profile: dict, evaluated: list):
|
||||
"""Table-level KVTable: global score and quality aggregates."""
|
||||
rows = []
|
||||
@@ -153,14 +210,15 @@ def _summary_block(profile: dict, evaluated: list):
|
||||
if isinstance(q.get("completeness"), (int, float))]
|
||||
vals = [q.get("validity") for _, q in evaluated
|
||||
if isinstance(q.get("validity"), (int, float))]
|
||||
cons = [q.get("consistency") for _, q in evaluated
|
||||
if isinstance(q.get("consistency"), (int, float))]
|
||||
if comps:
|
||||
rows.append(("Completitud media", _fmt_unit_pct(sum(comps) / len(comps))))
|
||||
if vals:
|
||||
rows.append(("Validez media", _fmt_unit_pct(sum(vals) / len(vals))))
|
||||
if cons:
|
||||
rows.append(("Consistencia media", _fmt_unit_pct(sum(cons) / len(cons))))
|
||||
rows.append(("Validez media (donde aplica)",
|
||||
_fmt_unit_pct(sum(vals) / len(vals))))
|
||||
|
||||
ru = _row_uniqueness(profile)
|
||||
if ru is not None:
|
||||
rows.append(("Unicidad de registro", _fmt_unit_pct(ru)))
|
||||
|
||||
n_problem = sum(1 for _, q in evaluated if q.get("issues"))
|
||||
rows.append(("Columnas con problemas", str(n_problem)))
|
||||
@@ -182,22 +240,9 @@ def _summary_block(profile: dict, evaluated: list):
|
||||
return model.KVTable(rows=rows, title="Resumen de calidad")
|
||||
|
||||
|
||||
def _fmt_unit_pct_or_pct(value) -> str:
|
||||
"""Format a value that may be a 0-1 fraction or an already-0-100 percentage."""
|
||||
try:
|
||||
num = float(value)
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
if num != num: # NaN
|
||||
return "—"
|
||||
pct = num * 100 if num <= 1.0 else num
|
||||
text = f"{pct:.1f}".rstrip("0").rstrip(".")
|
||||
return f"{text}%"
|
||||
|
||||
|
||||
def _scores_block(evaluated: list):
|
||||
"""DataTable with per-column score and its three-criteria breakdown."""
|
||||
header = ["Columna", "Calidad", "Completitud", "Validez", "Consistencia"]
|
||||
"""DataTable with per-column score and its completeness/validity breakdown."""
|
||||
header = ["Columna", "Calidad", "Completitud", "Validez"]
|
||||
rows = []
|
||||
# Worst columns first so the reader sees the problems at the top.
|
||||
ordered = sorted(
|
||||
@@ -210,22 +255,22 @@ def _scores_block(evaluated: list):
|
||||
col.get("name") or "(col)",
|
||||
_fmt_score(q.get("score")),
|
||||
_fmt_unit_pct(q.get("completeness")),
|
||||
_fmt_unit_pct(q.get("validity")),
|
||||
_fmt_unit_pct(q.get("consistency")),
|
||||
_fmt_validity(q.get("validity")),
|
||||
])
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(header=header, rows=rows,
|
||||
title="Scores de calidad por columna",
|
||||
note="0 = peor, 100 = mejor; ordenado de peor a mejor")
|
||||
note="0 = peor, 100 = mejor; «n/a» = dimensión no "
|
||||
"medible; ordenado de peor a mejor")
|
||||
|
||||
|
||||
def _issues_block(evaluated: list):
|
||||
"""DataTable listing Spanish issues per column, or a Note when there are none."""
|
||||
header = ["Columna", "Problemas detectados (español)"]
|
||||
"""DataTable listing ONLY real quality defects per column, or a Note."""
|
||||
header = ["Columna", "Problemas de calidad (español)"]
|
||||
rows = []
|
||||
for col, q in evaluated:
|
||||
joined = _join_issues(q.get("issues"))
|
||||
joined = _join_cells(q.get("issues"))
|
||||
if joined:
|
||||
rows.append([col.get("name") or "(col)", joined])
|
||||
if not rows:
|
||||
@@ -235,6 +280,55 @@ def _issues_block(evaluated: list):
|
||||
title="Problemas de calidad por columna")
|
||||
|
||||
|
||||
def _observations_block(evaluated: list):
|
||||
"""DataTable listing analytical observations per column, or None.
|
||||
|
||||
Observations (outliers, constant columns, ids, strong skew) are NOT quality
|
||||
defects: they do not affect the score. Returned as a separate table from the
|
||||
issues so the report never presents a legitimate outlier as a problem.
|
||||
"""
|
||||
header = ["Columna", "Observaciones analíticas"]
|
||||
rows = []
|
||||
for col, q in evaluated:
|
||||
joined = _join_cells(q.get("observations"))
|
||||
if joined:
|
||||
rows.append([col.get("name") or "(col)", joined])
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(
|
||||
header=header, rows=rows,
|
||||
title="Observaciones analíticas por columna",
|
||||
note="No son defectos de calidad y NO afectan al score; orientan el "
|
||||
"análisis (atípicos, columnas constantes, identificadores).")
|
||||
|
||||
|
||||
def _term(key: str, label: str, mark: bool) -> str:
|
||||
"""Render a term as a clickable glossary span when marking is enabled."""
|
||||
if mark:
|
||||
return f"[[term:{key}]]**{label}**[[/term]]"
|
||||
return f"**{label}**"
|
||||
|
||||
|
||||
def _criteria_intro(mark: bool) -> str:
|
||||
"""Intro: how the score is composed, with every term marked clickable.
|
||||
|
||||
Concise on purpose: the definitions of each term (calidad de datos,
|
||||
completitud, validez, unicidad de registro) now live in the GLOSARIO
|
||||
chapter, so the body no longer repeats them — it only states how the score
|
||||
is composed and keeps each term marked so it stays a clickable jump.
|
||||
"""
|
||||
calidad = _term("calidad_datos", "calidad de datos", mark)
|
||||
completitud = _term("completitud", "completitud", mark)
|
||||
validez = _term("validez", "validez", mark)
|
||||
unicidad = _term("unicidad_registro", "unicidad de registro", mark)
|
||||
return (
|
||||
f"La {calidad} de cada columna es un score de 0 a 100 que combina "
|
||||
f"{completitud} (peso 60%) y {validez} (peso 40%, cuando es medible); "
|
||||
f"a nivel de tabla se añade la {unicidad}. Los valores atípicos no "
|
||||
"bajan el score: se listan aparte como **observaciones analíticas**."
|
||||
)
|
||||
|
||||
|
||||
def build_calidad(profile: dict, ctx: dict):
|
||||
"""Build the data-quality Chapter, or None if the profile has no columns.
|
||||
|
||||
@@ -250,17 +344,35 @@ def build_calidad(profile: dict, ctx: dict):
|
||||
if not evaluated:
|
||||
return None # no columns to score -> chapter does not apply.
|
||||
|
||||
# Register the criteria terms in the shared glossary (if present) and mark
|
||||
# their first appearance clickable. Contract §11.1.
|
||||
glossary = ctx.get("glossary")
|
||||
mark = False
|
||||
if isinstance(glossary, model.GlossaryCollector):
|
||||
for key, (label, definition) in _TERMS.items():
|
||||
glossary.add(key, label, definition)
|
||||
mark = True
|
||||
|
||||
blocks = [
|
||||
model.Heading(text="Cómo se calcula la calidad", level=2),
|
||||
model.Markdown(text=_CRITERIA_INTRO),
|
||||
model.Markdown(text=_criteria_intro(mark)),
|
||||
_summary_block(profile, evaluated),
|
||||
model.Heading(text="Scores por columna", level=2),
|
||||
]
|
||||
scores = _scores_block(evaluated)
|
||||
if scores is not None:
|
||||
blocks.append(scores)
|
||||
blocks.append(model.Heading(text="Problemas detectados", level=2))
|
||||
|
||||
blocks.append(model.Heading(text="Problemas de calidad", level=2))
|
||||
blocks.append(_issues_block(evaluated))
|
||||
|
||||
observations = _observations_block(evaluated)
|
||||
if observations is not None:
|
||||
blocks.append(model.Heading(text="Observaciones analíticas", level=2))
|
||||
blocks.append(model.Note(
|
||||
"Las observaciones siguientes NO son defectos de calidad y no "
|
||||
"afectan al score: son señales para orientar el análisis."))
|
||||
blocks.append(observations)
|
||||
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
@@ -1,11 +1,12 @@
|
||||
"""Tests for the CALIDAD chapter — DoD: golden + edges + anti-cut.
|
||||
"""Tests for the CALIDAD chapter — DoD: golden + edges + anti-cut + glossary.
|
||||
|
||||
Self-contained: builds synthetic TableProfiles (no DuckDB) so the suite is fast
|
||||
and deterministic. Verifies that the chapter explains the quality criteria, shows
|
||||
per-column scores with the completeness/validity/consistency breakdown, lists the
|
||||
issues in Spanish (separate from the type flags), returns None when it does not
|
||||
apply, and that a wide profile with long names renders to PDF and PPTX without
|
||||
cutting any cell text (long content wraps, it is never truncated).
|
||||
and deterministic. Verifies the report-2046 quality model: the chapter explains
|
||||
the two scored dimensions (completitud 60% / validez 40%), shows per-column
|
||||
scores without a consistency column, keeps quality DEFECTS (issues) separate
|
||||
from analytical OBSERVATIONS (outliers, constant, ids), hooks the criteria terms
|
||||
into the glossary, returns None when it does not apply, and renders a wide
|
||||
profile to PDF and PPTX without cutting any cell text.
|
||||
"""
|
||||
|
||||
import os
|
||||
@@ -20,28 +21,30 @@ from datascience.automatic_eda.chapters.calidad import (
|
||||
CHAPTER_VERSION,
|
||||
)
|
||||
from datascience.automatic_eda import build_document, render_pdf, render_pptx
|
||||
from datascience.automatic_eda import model
|
||||
|
||||
|
||||
def _profile() -> dict:
|
||||
"""A small profile with one column per quality problem (nulls, outliers,
|
||||
constant, high-cardinality id) plus one clean column."""
|
||||
constant, high-cardinality id) plus one clean column. ``outlier_pct`` is in
|
||||
the 0-100 scale that describe_numeric actually emits."""
|
||||
return {
|
||||
"table": "demo",
|
||||
"quality_score": 72.5,
|
||||
"quality_score": 82.0,
|
||||
"duplicate_pct": 0.04,
|
||||
"null_cell_pct": 0.11,
|
||||
"constant_cols": ["flag_const"],
|
||||
"all_null_cols": [],
|
||||
"columns": [
|
||||
{"name": "edad", "inferred_type": "integer", "null_pct": 0.2,
|
||||
"numeric": {"outlier_pct": 0.15, "min": 0, "max": 99},
|
||||
"quality_score": 60},
|
||||
{"name": "edad", "inferred_type": "numeric", "null_pct": 0.2,
|
||||
"n_rows": 100, "unique_pct": 0.5,
|
||||
"numeric": {"outlier_pct": 15.0, "min": 0, "max": 99}},
|
||||
{"name": "nombre", "inferred_type": "text", "null_pct": 0.0,
|
||||
"unique_pct": 0.98, "quality_score": 80},
|
||||
"unique_pct": 0.98, "flags": ["possible_id"]},
|
||||
{"name": "flag_const", "inferred_type": "text", "null_pct": 0.0,
|
||||
"flags": ["constant"], "quality_score": 50},
|
||||
{"name": "limpia", "inferred_type": "float", "null_pct": 0.0,
|
||||
"numeric": {"outlier_pct": 0.0}, "quality_score": 100},
|
||||
"unique_pct": 0.01, "flags": ["constant"]},
|
||||
{"name": "limpia", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"unique_pct": 0.5, "numeric": {"outlier_pct": 0.0}},
|
||||
],
|
||||
}
|
||||
|
||||
@@ -50,16 +53,9 @@ def _tables(chapter):
|
||||
return [b for b in chapter.blocks if getattr(b, "kind", None) == "data_table"]
|
||||
|
||||
|
||||
def _scores_table(chapter):
|
||||
def _table_by_title(chapter, needle):
|
||||
for t in _tables(chapter):
|
||||
if "Scores" in (t.title or ""):
|
||||
return t
|
||||
return None
|
||||
|
||||
|
||||
def _issues_table(chapter):
|
||||
for t in _tables(chapter):
|
||||
if "Problemas" in (t.title or ""):
|
||||
if needle in (t.title or ""):
|
||||
return t
|
||||
return None
|
||||
|
||||
@@ -73,41 +69,86 @@ def test_golden_chapter_estructura_y_version():
|
||||
assert ch.id == "calidad"
|
||||
assert ch.version == CHAPTER_VERSION
|
||||
kinds = [b.kind for b in ch.blocks]
|
||||
# intro heading + markdown criteria + summary kv + scores table + issues table
|
||||
assert "markdown" in kinds and "kv_table" in kinds and "data_table" in kinds
|
||||
|
||||
|
||||
def test_golden_intro_explica_criterios_y_pesos():
|
||||
def test_golden_intro_nombra_dos_dimensiones_y_pesos():
|
||||
# La intro nombra las dos dimensiones, sus pesos y la unicidad, pero ya NO
|
||||
# repite sus definiciones largas: estas viven ahora en el capítulo GLOSARIO.
|
||||
ch = build_calidad(_profile(), {})
|
||||
intro = [b for b in ch.blocks if b.kind == "markdown"][0].text
|
||||
for needle in ("Completitud", "Validez", "Consistencia",
|
||||
"50%", "30%", "20%"):
|
||||
for needle in ("completitud", "validez", "60%", "40%",
|
||||
"unicidad de registro"):
|
||||
assert needle in intro, f"falta {needle!r} en la intro de criterios"
|
||||
# El principio: los outliers NO bajan la calidad.
|
||||
assert "atípicos" in intro and "no bajan" in intro
|
||||
# Ya no se menciona la dimensión consistencia eliminada.
|
||||
assert "20%" not in intro
|
||||
|
||||
|
||||
def test_golden_scores_incluyen_desglose_por_criterio():
|
||||
def test_golden_scores_sin_columna_consistencia():
|
||||
ch = build_calidad(_profile(), {})
|
||||
scores = _scores_table(ch)
|
||||
scores = _table_by_title(ch, "Scores")
|
||||
assert scores is not None
|
||||
assert scores.header == ["Columna", "Calidad", "Completitud",
|
||||
"Validez", "Consistencia"]
|
||||
# 4 columns scored, none dropped.
|
||||
assert scores.header == ["Columna", "Calidad", "Completitud", "Validez"]
|
||||
assert "Consistencia" not in scores.header
|
||||
assert len(scores.rows) == 4
|
||||
names = {r[0] for r in scores.rows}
|
||||
assert names == {"edad", "nombre", "flag_const", "limpia"}
|
||||
|
||||
|
||||
def test_golden_issues_en_espanol_separados_de_flags():
|
||||
def test_golden_outliers_en_observaciones_no_en_problemas():
|
||||
ch = build_calidad(_profile(), {})
|
||||
issues = _issues_table(ch)
|
||||
assert issues is not None
|
||||
flat = " | ".join(" ".join(r) for r in issues.rows)
|
||||
assert "nulos" in flat # completeness issue (ES)
|
||||
assert "outliers" in flat # validity issue (ES)
|
||||
assert "columna constante" in flat
|
||||
assert "posible id de alta cardinalidad" in flat
|
||||
# The raw type flag string must NOT leak as a "problem".
|
||||
assert "constant" not in flat or "columna constante" in flat
|
||||
problemas = _table_by_title(ch, "Problemas de calidad")
|
||||
observaciones = _table_by_title(ch, "Observaciones")
|
||||
assert problemas is not None
|
||||
assert observaciones is not None
|
||||
|
||||
problemas_txt = " | ".join(" ".join(r) for r in problemas.rows)
|
||||
observaciones_txt = " | ".join(" ".join(r) for r in observaciones.rows)
|
||||
|
||||
# Los nulos SÍ son problema de calidad.
|
||||
assert "nulos" in problemas_txt
|
||||
# Los outliers NO aparecen como problema...
|
||||
assert "atípic" not in problemas_txt and "outlier" not in problemas_txt
|
||||
# ...sino como observación analítica.
|
||||
assert "atípic" in observaciones_txt
|
||||
# Constante e id: observaciones, no problemas.
|
||||
assert "constante" in observaciones_txt
|
||||
assert "identificador" in observaciones_txt
|
||||
assert "constante" not in problemas_txt
|
||||
|
||||
|
||||
def test_golden_score_columna_limpia_es_100():
|
||||
"""Columna sin nulos, numérica nativa: score 100 aunque tenga (o no) outliers."""
|
||||
ch = build_calidad(_profile(), {})
|
||||
scores = _table_by_title(ch, "Scores")
|
||||
by_name = {r[0]: r for r in scores.rows}
|
||||
assert by_name["limpia"][1] == "100 / 100"
|
||||
# edad: 20% nulos -> 100*(0.6*0.8 + 0.4*1.0) = 88; los outliers no bajan nada.
|
||||
assert by_name["edad"][1] == "88 / 100"
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Glosario (contrato §11.1)
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_glosario_registra_los_cuatro_terminos_y_marca_clicable():
|
||||
glossary = model.GlossaryCollector()
|
||||
ch = build_calidad(_profile(), {"glossary": glossary})
|
||||
for key in ("calidad_datos", "completitud", "validez", "unicidad_registro"):
|
||||
assert glossary.has(key), f"término {key!r} no registrado en el glosario"
|
||||
intro = [b for b in ch.blocks if b.kind == "markdown"][0].text
|
||||
# Con colector presente, la primera aparición se marca clicable.
|
||||
assert "[[term:completitud]]" in intro
|
||||
assert "[[term:validez]]" in intro
|
||||
assert "[[term:calidad_datos]]" in intro
|
||||
assert "[[term:unicidad_registro]]" in intro
|
||||
|
||||
|
||||
def test_sin_glosario_no_marca_terminos():
|
||||
ch = build_calidad(_profile(), {}) # ctx sin glossary
|
||||
intro = [b for b in ch.blocks if b.kind == "markdown"][0].text
|
||||
assert "[[term:" not in intro
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
@@ -124,17 +165,17 @@ def test_edge_perfil_limpio_sin_problemas_usa_nota():
|
||||
prof = {
|
||||
"quality_score": 100,
|
||||
"columns": [
|
||||
{"name": "a", "inferred_type": "float", "null_pct": 0.0,
|
||||
"numeric": {"outlier_pct": 0.0}},
|
||||
{"name": "b", "inferred_type": "float", "null_pct": 0.0,
|
||||
"numeric": {"outlier_pct": 0.0}},
|
||||
{"name": "a", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"unique_pct": 0.5, "numeric": {"outlier_pct": 0.0}},
|
||||
{"name": "b", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"unique_pct": 0.5, "numeric": {"outlier_pct": 0.0}},
|
||||
],
|
||||
}
|
||||
ch = build_calidad(prof, {})
|
||||
assert ch is not None
|
||||
assert _issues_table(ch) is None # no issues table
|
||||
assert _table_by_title(ch, "Problemas de calidad") is None # no issues table
|
||||
notes = [b for b in ch.blocks if b.kind == "note"]
|
||||
assert notes and "No se detectaron problemas" in notes[0].text
|
||||
assert any("No se detectaron problemas" in n.text for n in notes)
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
@@ -143,44 +184,42 @@ def test_edge_perfil_limpio_sin_problemas_usa_nota():
|
||||
def _wide_profile(ncols: int = 22) -> dict:
|
||||
cols = [
|
||||
{"name": "identificador_unico_de_transaccion_con_nombre_muy_largo",
|
||||
"inferred_type": "text", "null_pct": 0.0, "unique_pct": 0.99},
|
||||
"inferred_type": "text", "null_pct": 0.0, "unique_pct": 0.99,
|
||||
"flags": ["possible_id"]},
|
||||
{"name": "columna_constante_sin_ninguna_variacion_de_valor",
|
||||
"inferred_type": "text", "null_pct": 0.0, "flags": ["constant"]},
|
||||
"inferred_type": "text", "null_pct": 0.0, "unique_pct": 0.01,
|
||||
"flags": ["constant"]},
|
||||
]
|
||||
for k in range(ncols - 2):
|
||||
cols.append({
|
||||
"name": f"metrica_numerica_de_negocio_{k:02d}_con_nombre_largo",
|
||||
"inferred_type": "float", "null_pct": 0.1 + (k % 3) * 0.05,
|
||||
"numeric": {"outlier_pct": 0.08, "min": 0, "max": 1000},
|
||||
"inferred_type": "numeric", "null_pct": 0.1 + (k % 3) * 0.05,
|
||||
"unique_pct": 0.5,
|
||||
"numeric": {"outlier_pct": 8.0, "min": 0, "max": 1000},
|
||||
})
|
||||
return {"table": "ancha", "quality_score": 70.0, "columns": cols}
|
||||
return {"table": "ancha", "quality_score": 70.0, "duplicate_pct": 0.0,
|
||||
"columns": cols}
|
||||
|
||||
|
||||
def test_anticut_pdf_y_pptx_no_truncan_nombres_largos():
|
||||
prof = _wide_profile(22)
|
||||
full = build_document(prof, {"dataset_name": "ancha"})
|
||||
assert any(c.id == "calidad" for c in full)
|
||||
# Render ONLY the calidad chapter so the anti-cut assertions are scoped to
|
||||
# this chapter (other chapters, e.g. portada, legitimately contain '…').
|
||||
chapters = [c for c in full if c.id == "calidad"]
|
||||
long_name = "metrica_numerica_de_negocio_00_con_nombre_largo"
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
pdf = os.path.join(d, "q.pdf")
|
||||
pptx = os.path.join(d, "q.pptx")
|
||||
rp = render_pdf(chapters, pdf, {"title": "EDA"})
|
||||
rx = render_pptx(chapters, pptx, {"title": "EDA"})
|
||||
render_pptx(chapters, pptx, {"title": "EDA"})
|
||||
assert os.path.exists(pdf) and os.path.exists(pptx)
|
||||
# The wide table forces pagination across several pages/slides.
|
||||
assert (rp or {}).get("n_pages", 0) >= 2
|
||||
|
||||
# PDF: the long name survives whole once wraps (spaces/newlines) removed,
|
||||
# and there is no truncation marker.
|
||||
pdf_txt = "".join((pg.extract_text() or "") for pg in PdfReader(pdf).pages)
|
||||
assert "…" not in pdf_txt and "..." not in pdf_txt
|
||||
norm = re.sub(r"\s+", "", pdf_txt)
|
||||
assert long_name in norm, "el nombre largo se cortó en el PDF"
|
||||
|
||||
# PPTX: long name present in some cell, untruncated.
|
||||
allt = []
|
||||
for s in Presentation(pptx).slides:
|
||||
for sh in s.shapes:
|
||||
|
||||
@@ -1,19 +1,25 @@
|
||||
"""Categorical distributions chapter (CAT DISTR).
|
||||
|
||||
Third reference chapter for AutomaticEDA. For every categorical column it shows,
|
||||
fulfilling the user's request:
|
||||
Third reference chapter for AutomaticEDA. Each categorical column gets **its own
|
||||
page (PDF) / slide (PPTX)**: every column is wrapped in a keep-together
|
||||
``model.Group`` with ``page_break_before=True`` (except the first, which may share
|
||||
the intro's page), so its chart sits next to its tables and no column is split.
|
||||
|
||||
1. A short opening explanation of **Shannon entropy** (what it measures, its 0
|
||||
and log2(k) bounds, the normalized 0–1 version) and the dataset row total used
|
||||
as a comparison baseline.
|
||||
2. Per column, a cardinality key/value table: distinct values, ``% distinct``
|
||||
(distinct / total rows), total dataset rows, singleton values (frequency 1),
|
||||
entropy with its theoretical maximum and the normalized ratio, mode, imbalance
|
||||
and string-length stats.
|
||||
3. A short note flagging problematic cardinality (id-like ≈100% distinct, or a
|
||||
A short intro names the clickable **[[term:entropia]]entropía[[/term]]** term —
|
||||
the full definition lives in the GLOSARIO chapter, so it is NOT repeated inline
|
||||
here (one click jumps to the glossary entry). The intro also carries the dataset
|
||||
row total used as a comparison baseline.
|
||||
|
||||
Per column the Group contains, in order:
|
||||
|
||||
1. A cardinality key/value table: distinct values, ``% distinct`` (distinct /
|
||||
total rows), total dataset rows, singleton values (frequency 1), entropy with
|
||||
its theoretical maximum and the normalized ratio, mode, imbalance and
|
||||
string-length stats.
|
||||
2. A short note flagging problematic cardinality (id-like ≈100% distinct, or a
|
||||
single dominating category).
|
||||
4. A ``top-k`` table (value / count / %).
|
||||
5. A **donut pie chart** of the most common categories (top-k + an "Otros"
|
||||
3. A ``top-k`` table (value / count / %).
|
||||
4. A **donut pie chart** of the most common categories (top-k + an "Otros"
|
||||
bucket), drawn lazily so the renderers scale it to fit entirely.
|
||||
|
||||
Data comes from the ``eda`` group: each ``columns[i]['categorical']`` is the
|
||||
@@ -33,7 +39,7 @@ import math
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_VERSION = "1.2.0"
|
||||
CHAPTER_ID = "cat_distr"
|
||||
CHAPTER_TITLE = "Distribuciones categóricas"
|
||||
|
||||
@@ -53,11 +59,17 @@ _TERM_ENTROPIA_DEF = (
|
||||
# Cap the number of categorical columns rendered to keep the document bounded;
|
||||
# the rest are summarized in a closing note (no silent truncation).
|
||||
MAX_COLS = 40
|
||||
# Rows shown in each top-k table and explicit slices in the pie.
|
||||
TOP_TABLE_ROWS = 15
|
||||
# Rows shown in each top-k table and explicit slices in the pie. Kept moderate so
|
||||
# the whole column — cardinality table + top-k table + donut — fits on ONE
|
||||
# page/slide with the chart next to its tables; the table note still reports
|
||||
# "top N of M" so nothing is silently hidden. For id-like columns (≈100%
|
||||
# distinct) the top-k table is dropped entirely (it would be a list of unique
|
||||
# values — pure noise), which also frees the room the donut needs (see build).
|
||||
TOP_TABLE_ROWS = 8
|
||||
PIE_TOP_K = 6
|
||||
# Truncate very long category labels in tables (the renderer also wraps).
|
||||
LABEL_MAX = 48
|
||||
# Truncate very long category labels in tables (the renderer also wraps). Kept
|
||||
# tight so a column with long id-like values (names, tickets) still fits its page.
|
||||
LABEL_MAX = 28
|
||||
|
||||
|
||||
def _fmt_int(value) -> str:
|
||||
@@ -267,45 +279,55 @@ def _normalize_card(card: dict) -> dict:
|
||||
|
||||
|
||||
def _cardinality_block(card: dict):
|
||||
"""KVTable with the cardinality / entropy metrics for one column."""
|
||||
"""KVTable with the cardinality / entropy metrics for one column.
|
||||
|
||||
Related metrics are grouped onto a single row each (distinct/%/unique;
|
||||
entropy bits/max/normalized; length min/mean/max) so the whole column —
|
||||
table + chart — fits one page/slide without dropping any datum; the short
|
||||
16:9 PPTX slide does not fit one metric per row plus a chart otherwise."""
|
||||
n_singletons = card.get("n_singletons")
|
||||
if n_singletons is not None and card.get("n_singletons_partial"):
|
||||
singletons = f"≥{_fmt_int(n_singletons)} (en top mostrado)"
|
||||
singletons = f"≥{_fmt_int(n_singletons)}"
|
||||
elif n_singletons is not None:
|
||||
singletons = _fmt_int(n_singletons)
|
||||
else:
|
||||
singletons = "—"
|
||||
|
||||
entropy_ref = _fmt_num(card.get("entropy"))
|
||||
emax = card.get("entropy_max")
|
||||
if emax is not None:
|
||||
entropy_ref = f"{entropy_ref} (máx {_fmt_num(emax)})"
|
||||
# Distinct count · % distinct · unique (frequency 1) on one row.
|
||||
distinct_combo = (f"{_fmt_int(card.get('n_distinct'))} · "
|
||||
f"{_fmt_pct_value(card.get('pct_distinct'))} · "
|
||||
f"{singletons} únicos")
|
||||
|
||||
# Entropy bits · theoretical max · normalized 0–1 on one row.
|
||||
entropy_combo = (f"{_fmt_num(card.get('entropy'))} bits · "
|
||||
f"máx {_fmt_num(card.get('entropy_max'))} · "
|
||||
f"norm {_fmt_num(card.get('entropy_norm'))}")
|
||||
|
||||
mode = card.get("mode")
|
||||
mode_pct = card.get("mode_pct")
|
||||
mode_str = "—" if mode is None else model._safe_str(mode)
|
||||
mode_str = "—" if mode is None else _truncate(mode, 32)
|
||||
if mode is not None and mode_pct is not None:
|
||||
mode_str = f"{mode_str} ({_fmt_pct_value(mode_pct)})"
|
||||
|
||||
rows = [
|
||||
("Valores distintos", _fmt_int(card.get("n_distinct"))),
|
||||
("% distintos", _fmt_pct_value(card.get("pct_distinct"))),
|
||||
("Distintos · % · únicos", distinct_combo),
|
||||
("Total filas (dataset)", _fmt_int(card.get("n_rows"))),
|
||||
("Valores únicos (frecuencia 1)", singletons),
|
||||
("Entropía (bits)", entropy_ref),
|
||||
("Entropía normalizada (0–1)", _fmt_num(card.get("entropy_norm"))),
|
||||
("Entropía (bits · máx · norm)", entropy_combo),
|
||||
("Moda", mode_str),
|
||||
]
|
||||
imbalance = card.get("imbalance")
|
||||
if imbalance is not None:
|
||||
rows.append(("Desbalance", _fmt_num(imbalance)))
|
||||
lm = card.get("len_min")
|
||||
lmean = card.get("len_mean")
|
||||
lmax = card.get("len_max")
|
||||
# Imbalance and string length (both secondary) share one closing row.
|
||||
extras = []
|
||||
if imbalance is not None:
|
||||
extras.append(f"desbalance {_fmt_num(imbalance)}")
|
||||
if any(v is not None for v in (lm, lmean, lmax)):
|
||||
rows.append((
|
||||
"Longitud (mín/media/máx)",
|
||||
f"{_fmt_num(lm)} / {_fmt_num(lmean)} / {_fmt_num(lmax)}"))
|
||||
extras.append(
|
||||
f"long. {_fmt_num(lm)}/{_fmt_num(lmean)}/{_fmt_num(lmax)}")
|
||||
if extras:
|
||||
rows.append(("Desbalance · longitud", " · ".join(extras)))
|
||||
return model.KVTable(rows=rows, title="Cardinalidad")
|
||||
|
||||
|
||||
@@ -315,7 +337,8 @@ def _flag_note(card: dict):
|
||||
return model.Note(
|
||||
"Casi todos los valores son distintos (≈100% distintos): la columna "
|
||||
"se comporta como un identificador y aporta poco para agrupar o "
|
||||
"comparar categorías.")
|
||||
"comparar categorías. No se lista el top de categorías (serían "
|
||||
"valores casi todos únicos).")
|
||||
if card.get("dominated"):
|
||||
mp = card.get("mode_pct")
|
||||
mp_str = _fmt_pct_value(mp) if mp is not None else "muy alta"
|
||||
@@ -335,7 +358,7 @@ def _topk_table(cat: dict):
|
||||
if not isinstance(t, dict):
|
||||
continue
|
||||
rows.append([
|
||||
model._safe_str(t.get("value")),
|
||||
_truncate(t.get("value")),
|
||||
_fmt_int(t.get("count")),
|
||||
_pct_from_maybe_fraction(t.get("pct")),
|
||||
])
|
||||
@@ -353,20 +376,16 @@ def _topk_table(cat: dict):
|
||||
def _intro_blocks(n_rows, mark_term: bool = False):
|
||||
total = _fmt_int(n_rows)
|
||||
# Mark the first appearance of the term as a clickable glossary jump when the
|
||||
# term was registered (mark_term). The visible text is identical either way.
|
||||
entropia = ("[[term:entropia]]**entropía de Shannon**[[/term]]" if mark_term
|
||||
else "**entropía de Shannon**")
|
||||
# term was registered (mark_term). The full definition of entropy lives in the
|
||||
# GLOSARIO chapter, so the intro only names the clickable term here instead of
|
||||
# repeating the long explanation (avoids the redundancy with the glossary).
|
||||
entropia = ("[[term:entropia]]entropía[[/term]]" if mark_term
|
||||
else "entropía")
|
||||
text = (
|
||||
f"La {entropia} mide cómo de repartidos están los valores de "
|
||||
"una columna categórica, en bits. Vale 0 cuando una sola categoría "
|
||||
"concentra todas las filas (máxima previsibilidad) y alcanza su máximo, "
|
||||
"log2(k) para k categorías distintas, cuando todas aparecen por igual "
|
||||
"(máxima diversidad). La **entropía normalizada** (entropía dividida por "
|
||||
"su máximo) la lleva al rango 0–1 para comparar columnas con distinto "
|
||||
"número de categorías. Para cada columna se muestran los valores "
|
||||
"distintos, el porcentaje que representan sobre el total de filas, los "
|
||||
"valores únicos (que aparecen una sola vez), la tabla de las categorías "
|
||||
"más frecuentes y un gráfico de tarta (donut) de las más comunes."
|
||||
f"Cada columna categórica ocupa su propia página: sus métricas de "
|
||||
f"cardinalidad —incluida la {entropia}—, una nota que señala cardinalidad "
|
||||
"problemática, la tabla de las categorías más frecuentes y un gráfico de "
|
||||
"tarta (donut) de las más comunes, todo junto."
|
||||
)
|
||||
if n_rows is not None:
|
||||
text += f" El dataset tiene {total} filas en total como referencia."
|
||||
@@ -398,24 +417,37 @@ def build_cat_distr(profile: dict, ctx: dict):
|
||||
blocks = list(_intro_blocks(n_rows, mark_term=mark_term))
|
||||
|
||||
rendered = cat_cols[:MAX_COLS]
|
||||
for col in rendered:
|
||||
for idx, col in enumerate(rendered):
|
||||
name = col.get("name") or "(columna)"
|
||||
cat = col.get("categorical") or {}
|
||||
card = _normalize_card(_cardinality(cat, n_rows))
|
||||
|
||||
blocks.append(model.Heading(text=str(name), level=2))
|
||||
blocks.append(_cardinality_block(card))
|
||||
# One Group per categorical column: heading + cardinality table + flag
|
||||
# note + top-k table + donut figure are kept together and the renderer
|
||||
# starts each on a fresh page/slide (page_break_before) so every column
|
||||
# gets its own page with its chart next to its tables. The first column
|
||||
# may share the intro's page (no forced break) to avoid a near-empty page.
|
||||
col_blocks = [
|
||||
model.Heading(text=str(name), level=2),
|
||||
_cardinality_block(card),
|
||||
]
|
||||
note = _flag_note(card)
|
||||
if note is not None:
|
||||
blocks.append(note)
|
||||
topk = _topk_table(cat)
|
||||
if topk is not None:
|
||||
blocks.append(topk)
|
||||
blocks.append(model.Figure(
|
||||
col_blocks.append(note)
|
||||
# For id-like columns (≈100% distinct) the top-k is a list of unique
|
||||
# values — pure noise; skip it (the flag note already explains why) and
|
||||
# let the donut take that room so the whole column fits one page/slide.
|
||||
if not card.get("id_like"):
|
||||
topk = _topk_table(cat)
|
||||
if topk is not None:
|
||||
col_blocks.append(topk)
|
||||
col_blocks.append(model.Figure(
|
||||
make=_pie_make(cat.get("top") or [], card.get("n_distinct"),
|
||||
str(name), n_rows),
|
||||
caption=(f"Categorías más comunes de «{_truncate(name, 32)}» "
|
||||
"(donut: top-k + «Otros»)")))
|
||||
blocks.append(model.Group(blocks=col_blocks,
|
||||
page_break_before=(idx > 0)))
|
||||
|
||||
if len(cat_cols) > len(rendered):
|
||||
omitted = len(cat_cols) - len(rendered)
|
||||
|
||||
@@ -2,11 +2,14 @@
|
||||
|
||||
Self-contained: builds synthetic TableProfiles (no DuckDB) so the suite is fast
|
||||
and deterministic. Verifies that ``build_cat_distr`` emits the blocks the user
|
||||
asked for (entropy intro, distinct/total/%-distinct/unique metrics, top-k table
|
||||
and a donut figure), that the chapter renders inside the full document to both
|
||||
PDF and PPTX showing that content, that a profile with no categorical columns
|
||||
yields ``None`` without raising, and that long labels / many columns are never
|
||||
cut in either output.
|
||||
asked for (distinct/total/%-distinct/unique metrics, top-k table and a donut
|
||||
figure), that EACH categorical column is wrapped in its own keep-together
|
||||
``Group`` that starts on a fresh page/slide (one column per page, chart next to
|
||||
its tables), that the long entropy explanation is NOT repeated inline (it lives
|
||||
in the glossary — only the clickable term is kept), that the chapter renders
|
||||
inside the full document to both PDF and PPTX showing that content, that a
|
||||
profile with no categorical columns yields ``None`` without raising, and that
|
||||
long labels / many columns are never cut in either output.
|
||||
"""
|
||||
|
||||
import os
|
||||
@@ -17,7 +20,8 @@ from pypdf import PdfReader
|
||||
from pptx import Presentation
|
||||
|
||||
from datascience.automatic_eda.model import (
|
||||
DataTable, Figure, Heading, KVTable, Note,
|
||||
DataTable, Figure, GlossaryCollector, Group, Heading, KVTable, Markdown,
|
||||
Note,
|
||||
)
|
||||
from datascience.automatic_eda.chapters.cat_distr import (
|
||||
CHAPTER_ID, CHAPTER_VERSION, build_cat_distr,
|
||||
@@ -81,8 +85,20 @@ def _pptx_text(path: str) -> str:
|
||||
return re.sub(r"\s+", " ", " ".join(parts))
|
||||
|
||||
|
||||
def _kinds(chapter):
|
||||
return [b.kind for b in chapter.blocks]
|
||||
def _flatten(blocks):
|
||||
"""Expand keep-together Groups so the per-column heading/table/figure are
|
||||
inspectable as a flat block list (the chapter wraps each column in a Group)."""
|
||||
out = []
|
||||
for b in blocks:
|
||||
if getattr(b, "kind", "") == "group":
|
||||
out.extend(_flatten(getattr(b, "blocks", []) or []))
|
||||
else:
|
||||
out.append(b)
|
||||
return out
|
||||
|
||||
|
||||
def _column_groups(chapter):
|
||||
return [b for b in chapter.blocks if isinstance(b, Group)]
|
||||
|
||||
|
||||
def test_golden_build_cat_distr_emite_bloques_pedidos():
|
||||
@@ -90,36 +106,101 @@ def test_golden_build_cat_distr_emite_bloques_pedidos():
|
||||
assert ch is not None
|
||||
assert ch.id == CHAPTER_ID
|
||||
assert ch.version == CHAPTER_VERSION
|
||||
kinds = _kinds(ch)
|
||||
# Entropy intro present.
|
||||
|
||||
# Entropy intro present, but the long explanation is gone (it lives in the
|
||||
# glossary now): only the term is named, no log2/normalizada walkthrough.
|
||||
headings = [b.text for b in ch.blocks if isinstance(b, Heading)]
|
||||
assert any("Entrop" in h for h in headings)
|
||||
md = next(b for b in ch.blocks if b.kind == "markdown")
|
||||
assert "entropía" in md.text.lower() and "log2" in md.text
|
||||
# Cardinality metrics: distinct, total rows, %-distinct, unique values.
|
||||
kv = next(b for b in ch.blocks if isinstance(b, KVTable))
|
||||
md = next(b for b in ch.blocks if isinstance(b, Markdown))
|
||||
assert "entropía" in md.text.lower()
|
||||
assert "log2" not in md.text # redundant explanation removed.
|
||||
assert "máxima diversidad" not in md.text
|
||||
|
||||
# Per-column blocks are wrapped in keep-together Groups: flatten to inspect.
|
||||
flat = _flatten(ch.blocks)
|
||||
kv = next(b for b in flat if isinstance(b, KVTable))
|
||||
labels = [r[0] for r in kv.rows]
|
||||
assert "Valores distintos" in labels
|
||||
assert "% distintos" in labels
|
||||
values = " ".join(str(r[1]) for r in kv.rows)
|
||||
# Cardinality metrics: distinct count, %-distinct, unique values and total
|
||||
# rows are present (grouped onto compact rows so the chart fits the page).
|
||||
assert "Distintos · % · únicos" in labels
|
||||
assert "Total filas (dataset)" in labels
|
||||
assert "Valores únicos (frecuencia 1)" in labels
|
||||
assert any("Entropía" in lbl for lbl in labels)
|
||||
assert "únicos" in values and "%" in values
|
||||
assert "bits" in values and "norm" in values # entropy + max + normalized.
|
||||
# Top-k table + pie figure.
|
||||
dt = next(b for b in ch.blocks if isinstance(b, DataTable))
|
||||
dt = next(b for b in flat if isinstance(b, DataTable))
|
||||
assert dt.header == ["Valor", "Conteo", "%"]
|
||||
assert any("neumaticos" in str(cell) for row in dt.rows for cell in row)
|
||||
assert any(isinstance(b, Figure) for b in ch.blocks)
|
||||
# id-like column flagged with a Note.
|
||||
assert any(isinstance(b, Note) and "identificador" in b.text
|
||||
for b in ch.blocks)
|
||||
assert any(isinstance(b, Figure) for b in flat)
|
||||
# id-like column flagged with a Note that also explains the top-k is dropped.
|
||||
idnote = next((b for b in flat
|
||||
if isinstance(b, Note) and "identificador" in b.text), None)
|
||||
assert idnote is not None
|
||||
assert "No se lista el top" in idnote.text
|
||||
|
||||
|
||||
def test_golden_render_pdf_muestra_categoricas():
|
||||
def test_golden_idlike_omite_topk_y_conserva_donut():
|
||||
# The id-like column (uuid, 100% distinct) must NOT carry a top-k DataTable
|
||||
# (it would be a list of unique values), but must still keep its donut Figure
|
||||
# and its cardinality table so it stays a full per-column page.
|
||||
ch = build_cat_distr(_profile(), {})
|
||||
groups = _column_groups(ch)
|
||||
uuid_group = next(g for g in groups
|
||||
if any(getattr(b, "text", "") == "uuid" for b in g.blocks))
|
||||
kinds = [b.kind for b in uuid_group.blocks]
|
||||
assert "data_table" not in kinds # top-k of unique values dropped.
|
||||
assert "kv_table" in kinds # cardinality kept.
|
||||
assert "figure" in kinds # donut kept (chart per column).
|
||||
# A non-id-like column keeps its top-k table.
|
||||
cat_group = next(g for g in groups
|
||||
if any(getattr(b, "text", "") == "categoria"
|
||||
for b in g.blocks))
|
||||
assert "data_table" in [b.kind for b in cat_group.blocks]
|
||||
|
||||
|
||||
def test_golden_una_pagina_por_columna_groups():
|
||||
ch = build_cat_distr(_profile(), {})
|
||||
groups = _column_groups(ch)
|
||||
# Two categorical columns -> two column Groups (numeric column excluded).
|
||||
assert len(groups) == 2
|
||||
# Each Group carries one column: a heading + its cardinality table + figure.
|
||||
for g in groups:
|
||||
kinds = [b.kind for b in g.blocks]
|
||||
assert kinds[0] == "heading"
|
||||
assert "kv_table" in kinds
|
||||
assert "figure" in kinds
|
||||
# The first column may share the intro page (no forced break); every later
|
||||
# column starts on a fresh page/slide so each column gets its own page.
|
||||
assert groups[0].page_break_before is False
|
||||
assert all(g.page_break_before is True for g in groups[1:])
|
||||
|
||||
|
||||
def test_golden_entropia_clicable_y_definicion_en_glosario():
|
||||
# With a glossary collector the intro marks the clickable term and the FULL
|
||||
# definition (the long explanation removed from the intro) lands in the
|
||||
# glossary, not inline — no data lost, just relocated.
|
||||
gc = GlossaryCollector()
|
||||
ch = build_cat_distr(_profile(), {"glossary": gc})
|
||||
md = next(b for b in ch.blocks if isinstance(b, Markdown))
|
||||
assert "[[term:entropia]]entropía[[/term]]" in md.text
|
||||
assert gc.has("entropia")
|
||||
entry = gc.get("entropia")
|
||||
assert entry is not None
|
||||
# The definition kept in the glossary still carries the detail removed inline.
|
||||
assert "log2" in entry["definition"]
|
||||
assert "normalizada" in entry["definition"].lower()
|
||||
|
||||
|
||||
def test_golden_render_pdf_una_pagina_por_columna():
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pdf")
|
||||
res = render_automatic_eda_pdf(_profile(), out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
cat_meta = next(c for c in res["chapters"] if c["id"] == CHAPTER_ID)
|
||||
# Two categorical columns, each on its own page -> >= 2 pages for the
|
||||
# chapter (intro shares the first column's page).
|
||||
assert cat_meta["n_pages"] >= 2
|
||||
txt = _pdf_text(out)
|
||||
assert "Entrop" in txt
|
||||
assert "distintos" in txt
|
||||
@@ -133,13 +214,91 @@ def test_golden_render_pptx_muestra_categoricas():
|
||||
out = os.path.join(d, "eda.pptx")
|
||||
res = render_automatic_eda_pptx(_profile(), out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
cat_meta = next(c for c in res["chapters"] if c["id"] == CHAPTER_ID)
|
||||
assert cat_meta["n_slides"] >= 2 # one slide per categorical column.
|
||||
txt = _pptx_text(out)
|
||||
assert "Entrop" in txt
|
||||
assert "categoria" in txt and "neumaticos" in txt
|
||||
assert "distintos" in txt
|
||||
|
||||
|
||||
def _profile_high_card() -> dict:
|
||||
"""Profile with a high-cardinality NON-id-like categorical column whose top-k
|
||||
of long values would split from its donut on a short 16:9 slide unless the
|
||||
renderer trims the table — the exact case the adversarial check flagged
|
||||
(Ticket / Cabin)."""
|
||||
long_vals = [f"Valor largo de categoria numero {i:02d} con texto extra"
|
||||
for i in range(40)]
|
||||
top = [{"value": v, "count": 60 - i, "pct": (60 - i) / 5000.0}
|
||||
for i, v in enumerate(long_vals)]
|
||||
return {
|
||||
"table": "t", "source": "t.csv", "n_rows": 5000, "n_cols": 3,
|
||||
"quality_score": 80.0,
|
||||
"columns": [
|
||||
{"name": "precio", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"numeric": {"mean": 1.0, "median": 1.0, "min": 0.0, "max": 2.0,
|
||||
"std": 0.5}},
|
||||
# 40 distinct over 5000 rows = 0.8% distinct -> NOT id-like, keeps
|
||||
# its (long) top-k table; the tall table must not push the donut off.
|
||||
{"name": "alta_card_col", "inferred_type": "categorical",
|
||||
"null_pct": 0.0, "distinct_count": 40,
|
||||
"categorical": {"top": top, "mode": long_vals[0], "n_distinct": 40,
|
||||
"entropy": 5.2, "imbalance": 1.2, "len_min": 40,
|
||||
"len_mean": 45, "len_max": 50}},
|
||||
{"name": "baja_card_col", "inferred_type": "categorical",
|
||||
"null_pct": 0.0, "distinct_count": 4,
|
||||
"categorical": {
|
||||
"top": [{"value": "norte", "count": 2000, "pct": 0.4},
|
||||
{"value": "sur", "count": 1500, "pct": 0.3},
|
||||
{"value": "este", "count": 1000, "pct": 0.2},
|
||||
{"value": "oeste", "count": 500, "pct": 0.1}],
|
||||
"mode": "norte", "n_distinct": 4, "entropy": 1.8}},
|
||||
],
|
||||
}
|
||||
|
||||
|
||||
def test_golden_pptx_una_slide_por_columna_con_su_grafico():
|
||||
"""Each categorical column occupies EXACTLY ONE cat_distr slide that carries
|
||||
BOTH its cardinality table and its donut figure (picture) — i.e. the chart is
|
||||
never separated from its table, even for a high-cardinality column."""
|
||||
from pptx.enum.shapes import MSO_SHAPE_TYPE
|
||||
|
||||
prof = _profile_high_card()
|
||||
cat_names = ["alta_card_col", "baja_card_col"]
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pptx")
|
||||
res = render_automatic_eda_pptx(prof, out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
prs = Presentation(out)
|
||||
|
||||
# Per column: the cat_distr slides whose text mentions it, and whether the
|
||||
# owning slide also has the donut caption + an actual picture shape.
|
||||
slides_with_col = {n: [] for n in cat_names}
|
||||
owner_has_chart = {n: False for n in cat_names}
|
||||
for i, sl in enumerate(prs.slides):
|
||||
texts, has_pic = [], False
|
||||
for sh in sl.shapes:
|
||||
if sh.has_text_frame:
|
||||
texts.append(sh.text_frame.text)
|
||||
if sh.shape_type == MSO_SHAPE_TYPE.PICTURE:
|
||||
has_pic = True
|
||||
txt = re.sub(r"\s+", " ", " ".join(texts))
|
||||
if "Distribuciones categ" not in txt: # footer stamp of the chapter.
|
||||
continue
|
||||
for n in cat_names:
|
||||
if n in txt:
|
||||
slides_with_col[n].append(i)
|
||||
has_table = "Cardinalidad" in txt or "distintos" in txt
|
||||
if has_pic and "donut" in txt and has_table:
|
||||
owner_has_chart[n] = True
|
||||
|
||||
for n in cat_names:
|
||||
# Exactly one slide carries the column (not split across slides).
|
||||
assert len(slides_with_col[n]) == 1, (n, slides_with_col[n])
|
||||
# That single slide also holds its table AND its donut picture.
|
||||
assert owner_has_chart[n], (n, "tabla y donut no están en el mismo slide")
|
||||
|
||||
|
||||
def test_edge_sin_categoricas_devuelve_none():
|
||||
only_numeric = {
|
||||
"n_rows": 10, "columns": [
|
||||
@@ -170,11 +329,15 @@ def test_anti_corte_label_largo_y_muchas_columnas():
|
||||
|
||||
ch = build_cat_distr(profile, {})
|
||||
assert ch is not None
|
||||
# One Group per column, each forcing its own page (except the first).
|
||||
groups = _column_groups(ch)
|
||||
assert len(groups) == 30
|
||||
assert sum(1 for g in groups if g.page_break_before) == 29
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
pdf = os.path.join(d, "anti.pdf")
|
||||
res = render_automatic_eda_pdf(profile, pdf, {"write_manifest": False})
|
||||
assert res["path"] == pdf
|
||||
assert res["n_pages"] > 1 # many columns spilled across pages, OK.
|
||||
assert res["n_pages"] > 1 # one page per column, OK.
|
||||
txt = _pdf_text(pdf)
|
||||
# Long label wrapped (not truncated): every word survives.
|
||||
for word in ("Lorem", "incididunt", "reprehenderit", "voluptate"):
|
||||
|
||||
@@ -47,6 +47,53 @@ _MAX_MATRIX_LABELS = 16
|
||||
# How many pairs to show in each of the top-positive / top-negative tables.
|
||||
_TOP_N = 10
|
||||
|
||||
# Glossary terms this chapter explains. Each is registered in the shared
|
||||
# collector (ctx['glossary']) and marked clickable on its first appearance in the
|
||||
# body — the canonical two-step pattern (see ``cat_distr`` for the reference
|
||||
# implementation): ``glossary.add(key, label, definition)`` + the inline span
|
||||
# ``[[term:KEY]]texto visible[[/term]]`` in a Markdown block. Mapping key ->
|
||||
# (label, definition). ``fdr`` is only registered when the FDR summary is present.
|
||||
_TERM_DEFS = {
|
||||
"pearson": (
|
||||
"Pearson (coeficiente r)",
|
||||
"Coeficiente de correlación lineal de Pearson (r) entre dos variables "
|
||||
"numéricas. Va de −1 (relación lineal inversa perfecta) a +1 (directa "
|
||||
"perfecta); 0 indica ausencia de relación lineal. Sólo capta relaciones "
|
||||
"lineales, por eso lleva signo."),
|
||||
"spearman": (
|
||||
"Spearman (correlación de rangos)",
|
||||
"Correlación de rangos de Spearman: el coeficiente de Pearson calculado "
|
||||
"sobre los puestos (rangos) de los valores en vez de sus magnitudes. Mide "
|
||||
"relaciones monótonas (no necesariamente lineales), va de −1 a +1 y es "
|
||||
"robusta frente a valores atípicos."),
|
||||
"cramers_v": (
|
||||
"Cramér's V",
|
||||
"Medida de asociación entre dos variables categóricas, derivada del "
|
||||
"estadístico chi-cuadrado y normalizada al rango 0–1 (0 = independientes, "
|
||||
"1 = asociación total). No tiene signo: sólo mide la intensidad."),
|
||||
"correlation_ratio": (
|
||||
"Razón de correlación (η)",
|
||||
"Razón de correlación (eta) entre una variable numérica y una "
|
||||
"categórica: la fracción de la varianza de la numérica explicada por los "
|
||||
"grupos de la categórica. Va de 0 (los grupos no explican nada) a 1 (la "
|
||||
"explican toda); no tiene signo."),
|
||||
"fdr": (
|
||||
"Comparaciones múltiples (FDR)",
|
||||
"Al evaluar muchos pares a la vez, algunos parecen significativos por "
|
||||
"puro azar. La corrección por tasa de falsos descubrimientos (FDR, "
|
||||
"Benjamini-Hochberg) ajusta los p-valores para controlar la proporción "
|
||||
"esperada de falsos positivos entre los pares declarados significativos."),
|
||||
}
|
||||
|
||||
|
||||
def _term(mark: bool, key: str, text: str) -> str:
|
||||
"""Wrap ``text`` as a clickable glossary span when ``mark`` is True.
|
||||
|
||||
The visible text is identical with or without the marker (the renderers strip
|
||||
the marker), so wrapping never changes line layout — it only adds the link.
|
||||
"""
|
||||
return f"[[term:{key}]]{text}[[/term]]" if mark else text
|
||||
|
||||
|
||||
def _is_num(v) -> bool:
|
||||
"""True for a real, finite int/float (not bool, not NaN/inf)."""
|
||||
@@ -245,7 +292,7 @@ def _methods_block(corr: dict):
|
||||
return model.KVTable(rows=rows, title="Métodos de asociación")
|
||||
|
||||
|
||||
def _fdr_text(corr: dict) -> str | None:
|
||||
def _fdr_text(corr: dict, mark_term: bool = False) -> str | None:
|
||||
"""One-line summary of the multiple-testing (FDR) correction, or None."""
|
||||
mt = corr.get("multiple_testing")
|
||||
if not isinstance(mt, dict) or not mt:
|
||||
@@ -254,7 +301,8 @@ def _fdr_text(corr: dict) -> str | None:
|
||||
alpha = mt.get("alpha")
|
||||
n_tests = mt.get("n_tests")
|
||||
n_rej = mt.get("n_rejected")
|
||||
parts = [f"Corrección por comparaciones múltiples ({method}"]
|
||||
multi = _term(mark_term, "fdr", "comparaciones múltiples")
|
||||
parts = [f"Corrección por {multi} ({method}"]
|
||||
if _is_num(alpha):
|
||||
parts[0] += f", α={float(alpha):g}"
|
||||
parts[0] += ")."
|
||||
@@ -289,13 +337,30 @@ def build_correlacion(profile: dict, ctx: dict):
|
||||
|
||||
blocks: list = []
|
||||
|
||||
# Intro: what this chapter shows and how to read the sign.
|
||||
# Register the always-present method terms in the shared glossary and mark
|
||||
# their first appearance clickable (the FDR term is registered lazily below,
|
||||
# only when the FDR summary is actually emitted). Degrades silently when no
|
||||
# collector is in ctx (standalone render) — mark_term stays False.
|
||||
glossary = ctx.get("glossary")
|
||||
gloss = glossary if isinstance(glossary, model.GlossaryCollector) else None
|
||||
mark_term = gloss is not None
|
||||
if gloss is not None:
|
||||
for key in ("pearson", "spearman", "cramers_v", "correlation_ratio"):
|
||||
label, definition = _TERM_DEFS[key]
|
||||
gloss.add(key, label, definition)
|
||||
|
||||
# Intro: what this chapter shows and how to read the sign. Build the marked
|
||||
# method names as locals first (avoids backslash-in-f-string for "Cramér's V").
|
||||
t_pearson = _term(mark_term, "pearson", "Pearson")
|
||||
t_spearman = _term(mark_term, "spearman", "Spearman")
|
||||
t_cramers = _term(mark_term, "cramers_v", "Cramér's V")
|
||||
t_corr_ratio = _term(mark_term, "correlation_ratio", "razón de correlación")
|
||||
blocks.append(model.Markdown(text=(
|
||||
"Asociación entre columnas. Cada par se evalúa con la métrica adecuada a "
|
||||
"sus tipos (Pearson/Spearman entre numéricas — con **signo**; Cramér's V "
|
||||
"entre categóricas; razón de correlación num-categórica; información mutua "
|
||||
"como medida común no lineal). Sólo las correlaciones **num-num** tienen "
|
||||
"dirección: por eso los pares **negativos** son siempre num-num.")))
|
||||
"Asociación entre columnas. Cada par se evalúa con la métrica adecuada "
|
||||
f"a sus tipos: {t_pearson}/{t_spearman} (numéricas), {t_cramers} "
|
||||
f"(categóricas), {t_corr_ratio} (num-categórica) e información mutua. "
|
||||
"Sólo las correlaciones **num-num** llevan **signo** (dirección): por "
|
||||
"eso los pares **negativos** son siempre num-num.")))
|
||||
|
||||
# 1) Association matrix (heatmap).
|
||||
labels, trimmed = _ordered_labels(pairs)
|
||||
@@ -337,9 +402,13 @@ def build_correlacion(profile: dict, ctx: dict):
|
||||
"no estacionarias y pueden ser espurias (Granger–Newbold). Compáralas "
|
||||
"sobre los retornos/diferencias antes de interpretarlas.")))
|
||||
|
||||
# 4) FDR summary + methods legend.
|
||||
fdr_text = _fdr_text(corr)
|
||||
# 4) FDR summary + methods legend. Register the FDR term only when its
|
||||
# summary is emitted, so the glossary never lists an unreferenced entry.
|
||||
fdr_text = _fdr_text(corr, mark_term=mark_term)
|
||||
if fdr_text:
|
||||
if gloss is not None:
|
||||
label, definition = _TERM_DEFS["fdr"]
|
||||
gloss.add("fdr", label, definition)
|
||||
blocks.append(model.Markdown(text=fdr_text))
|
||||
methods = _methods_block(corr)
|
||||
if methods is not None:
|
||||
|
||||
@@ -173,3 +173,25 @@ def test_anticorte_matriz_ancha_y_etiquetas_largas_no_se_cortan():
|
||||
assert rx["path"] == pptx and os.path.exists(pptx) and rx["n_slides"] >= 1
|
||||
# A short, unbreakable fragment of the long label survives the wrap.
|
||||
assert "azufre" in _pdf_text(pdf)
|
||||
|
||||
|
||||
def test_glosario_engancha_metodos_y_fdr():
|
||||
"""Mejora 4b: los métodos de correlación (Pearson, Spearman, Cramér's V,
|
||||
razón de correlación) y la corrección por comparaciones múltiples (FDR) se
|
||||
registran en el colector compartido y se marcan clicables en el cuerpo. Sin
|
||||
colector en ctx, el capítulo degrada y no marca nada."""
|
||||
from datascience.automatic_eda.model import GlossaryCollector
|
||||
|
||||
g = GlossaryCollector()
|
||||
ch = build_correlacion(_profile(), {"glossary": g})
|
||||
assert ch is not None
|
||||
keys = {t["key"] for t in g.terms()}
|
||||
assert {"pearson", "spearman", "cramers_v", "correlation_ratio", "fdr"} <= keys
|
||||
body = " ".join(b.text for b in ch.blocks if b.kind == "markdown")
|
||||
for k in ("pearson", "spearman", "cramers_v", "correlation_ratio", "fdr"):
|
||||
assert f"[[term:{k}]]" in body, k
|
||||
|
||||
# Sin colector: degrada limpio (ningún marcador en el cuerpo).
|
||||
ch2 = build_correlacion(_profile(), {})
|
||||
body2 = " ".join(b.text for b in ch2.blocks if b.kind == "markdown")
|
||||
assert "[[term:" not in body2
|
||||
|
||||
@@ -0,0 +1,594 @@
|
||||
"""Missingness chapter (MISSINGNESS) — patterns of missing data.
|
||||
|
||||
Complements the CALIDAD chapter: where CALIDAD reports *how much* is missing per
|
||||
column (the null percentage that lowers the completeness score), this chapter
|
||||
reports the **pattern** of the missing data — whether columns tend to be missing
|
||||
*together* (co-occurrence of absences) or independently. That distinction is what
|
||||
separates data that is missing completely at random ([[term:mcar]]MCAR[[/term]])
|
||||
from data missing as a function of another variable ([[term:mar]]MAR[[/term]]),
|
||||
which is the key question to settle before imputing or modelling.
|
||||
|
||||
The chapter activates only when the table actually has missing data (at least one
|
||||
column with a null in the aggregated profile); otherwise it returns ``None`` and
|
||||
disappears from the document.
|
||||
|
||||
Sections, in order:
|
||||
|
||||
1. **Resumen global** — % of missing cells in the dataset, number of columns with
|
||||
nulls, and complete rows (no missing) vs incomplete rows (≥1 missing).
|
||||
2. **Ranking por columna** — columns sorted by their null percentage, with a
|
||||
horizontal bar figure.
|
||||
3. **Co-ocurrencia de ausencias** — the correlation of the binary is-null masks
|
||||
between columns (which columns tend to be missing together): a heatmap plus a
|
||||
table of the top column pairs that co-miss.
|
||||
4. **Patrones de fila** — the most frequent "which columns are missing together"
|
||||
row patterns, in the style of missingno's pattern matrix.
|
||||
5. **Lectura MCAR/MAR** — an interpretive, *exploratory* note (not a confirmatory
|
||||
test such as Little's) reading the absence correlations as a hint of MCAR
|
||||
(independent absences) vs MAR (co-occurring absences).
|
||||
|
||||
The aggregate per-column null counts come from the ``eda`` group ``TableProfile``
|
||||
(``columns[i]['null_count'] / 'null_pct'`` and the table-level ``null_cell_pct``).
|
||||
The per-row is-null mask needed for co-occurrence is built from raw data: a single
|
||||
DuckDB push-down over ``ctx['db_path'] / ctx['table']`` (same pattern as the
|
||||
AGREGACION chapter) covering ALL columns, with a fallback to the numeric-only
|
||||
``ctx['raw_numeric']`` when no database is reachable. All the heavy lifting is
|
||||
delegated to pure registry functions (``missingness_overview``,
|
||||
``missingness_correlation``, ``missingness_row_patterns``) and two figure helpers
|
||||
(``missingness_rank_bar_figure``, ``missingness_corr_heatmap_figure``); every one
|
||||
is imported lazily and degrades to an honest note so this chapter never raises.
|
||||
|
||||
Contract: build_<id>(profile, ctx) -> Chapter | None ; CHAPTER_VERSION = "x.y.z".
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
CHAPTER_ID = "missingness"
|
||||
CHAPTER_TITLE = "Datos faltantes"
|
||||
|
||||
# Sample cap for the per-row is-null mask push-down. Co-occurrence and row
|
||||
# patterns are computed on this sample; the global % of missing cells and the
|
||||
# per-column ranking come from the (exact) aggregated profile instead.
|
||||
MASK_SAMPLE = 5000
|
||||
# Thresholds for the MCAR/MAR heuristic note. A pair counts as a *strong*
|
||||
# co-occurrence when the absence correlation alone is high; as a *partial*
|
||||
# co-occurrence when the absences overlap materially (high Jaccard) even if the
|
||||
# Pearson correlation is modest — the usual case when one column is missing far
|
||||
# more often than the other (e.g. Cabin 77% vs Age 20% in Titanic), which dilutes
|
||||
# the correlation while the rows still co-miss in absolute terms.
|
||||
_CORR_STRONG = 0.30
|
||||
_JACCARD_NOTABLE = 0.20
|
||||
# Rows shown in the top-pairs and row-patterns tables (bounded, never silently
|
||||
# truncated: the table note reports the full count).
|
||||
_TOP_PAIRS = 12
|
||||
_TOP_PATTERNS = 12
|
||||
# Truncate long column names in tables (the renderer also wraps).
|
||||
_LABEL_MAX = 28
|
||||
|
||||
# Glossary terms this chapter explains (contract §11.1). Registered in the shared
|
||||
# collector and marked clickable on their first appearance.
|
||||
_TERMS = {
|
||||
"missingness": (
|
||||
"Patrón de datos faltantes (missingness)",
|
||||
"El patrón con el que faltan los datos: cuánto falta, en qué columnas y "
|
||||
"si las ausencias de unas columnas coinciden (co-ocurren) con las de "
|
||||
"otras. Analizarlo —no solo contar nulos— distingue datos que faltan al "
|
||||
"azar (MCAR) de los que faltan en función de otra variable (MAR), lo que "
|
||||
"decide cómo imputar o si descartar filas sin sesgar el análisis.",
|
||||
),
|
||||
"mcar": (
|
||||
"MCAR (Missing Completely At Random)",
|
||||
"Los valores faltan de forma independiente de cualquier dato, observado o "
|
||||
"no: las ausencias de unas columnas no se relacionan entre sí ni con los "
|
||||
"valores. Es el caso más benigno —descartar filas o imputar la media no "
|
||||
"introduce sesgo—, pero rara vez se cumple del todo en datos reales.",
|
||||
),
|
||||
"mar": (
|
||||
"MAR (Missing At Random)",
|
||||
"La probabilidad de que un valor falte depende de OTRAS variables "
|
||||
"observadas (p. ej. una medición que falta más en cierto grupo). Las "
|
||||
"ausencias co-ocurren entre columnas o se relacionan con los valores de "
|
||||
"otras; imputar exige condicionar en esas variables para no sesgar. La "
|
||||
"co-ocurrencia fuerte de ausencias es un indicio (exploratorio) de MAR.",
|
||||
),
|
||||
}
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Small defensive formatters (own copy: the chapter never imports siblings).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _fmt_int(value) -> str:
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
return f"{int(round(float(value))):,}".replace(",", ".")
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
|
||||
|
||||
def _fmt_pct(value, decimals: int = 1) -> str:
|
||||
"""Format an already-0-100 value as a percentage. None -> placeholder."""
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
return f"{float(value):.{decimals}f}%"
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
|
||||
|
||||
def _fmt_num(value, decimals: int = 3) -> str:
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
f = float(value)
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
if f != f: # NaN
|
||||
return "—"
|
||||
text = f"{f:.{decimals}f}".rstrip("0").rstrip(".")
|
||||
return text if text else "0"
|
||||
|
||||
|
||||
def _truncate(text, limit: int = _LABEL_MAX) -> str:
|
||||
s = model._safe_str(text)
|
||||
if len(s) <= limit:
|
||||
return s
|
||||
return s[: max(1, limit - 1)].rstrip() + "…"
|
||||
|
||||
|
||||
def _term(key: str, label: str, mark: bool) -> str:
|
||||
if mark:
|
||||
return f"[[term:{key}]]**{label}**[[/term]]"
|
||||
return f"**{label}**"
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Profile reads (exact, all rows).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _null_count_of(col: dict):
|
||||
"""Best-effort null count of a column: ``null_count`` or null_pct*n_rows."""
|
||||
nc = col.get("null_count")
|
||||
if isinstance(nc, (int, float)) and not isinstance(nc, bool):
|
||||
return int(nc)
|
||||
np_ = col.get("null_pct")
|
||||
nr = col.get("n_rows")
|
||||
if isinstance(np_, (int, float)) and isinstance(nr, (int, float)):
|
||||
return int(round(float(np_) * float(nr)))
|
||||
return 0
|
||||
|
||||
|
||||
def _columns_with_nulls(profile: dict):
|
||||
"""Return ``[(name, null_count, null_pct_0_100)]`` for columns with nulls,
|
||||
sorted by null percentage descending. Reads the aggregated profile (exact)."""
|
||||
cols = profile.get("columns") or []
|
||||
out = []
|
||||
for c in cols:
|
||||
if not isinstance(c, dict):
|
||||
continue
|
||||
nc = _null_count_of(c)
|
||||
if nc <= 0:
|
||||
continue
|
||||
np_ = c.get("null_pct")
|
||||
nr = c.get("n_rows") or profile.get("n_rows")
|
||||
if isinstance(np_, (int, float)) and not isinstance(np_, bool):
|
||||
pct = float(np_) * 100.0 if np_ <= 1.0 else float(np_)
|
||||
elif nr:
|
||||
pct = nc / float(nr) * 100.0
|
||||
else:
|
||||
pct = None
|
||||
out.append((c.get("name") or "(col)", nc, pct))
|
||||
out.sort(key=lambda t: (t[2] if t[2] is not None else -1.0), reverse=True)
|
||||
return out
|
||||
|
||||
|
||||
def _global_missing_pct(profile: dict):
|
||||
"""Table-level % of missing cells (0-100), exact, from the profile."""
|
||||
v = profile.get("null_cell_pct")
|
||||
if isinstance(v, (int, float)) and not isinstance(v, bool):
|
||||
return float(v) * 100.0 if v <= 1.0 else float(v)
|
||||
return None
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Per-row is-null mask (sample): DuckDB push-down, fallback to raw_numeric.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _build_query_fn(ctx: dict):
|
||||
"""Return ``(query_fn, table)`` for a DuckDB-backed ctx, or ``(None, None)``.
|
||||
|
||||
Mirrors build_eda_render_ctx: a read-only closure over the registry wrapper.
|
||||
Only DuckDB is supported here; any other backend degrades to raw_numeric."""
|
||||
db_path = ctx.get("db_path")
|
||||
table = ctx.get("table")
|
||||
if not db_path or not table:
|
||||
return None, None
|
||||
try:
|
||||
from infra import duckdb_query_readonly
|
||||
except Exception: # noqa: BLE001 — wrapper unavailable -> degrade.
|
||||
return None, None
|
||||
|
||||
def query_fn(sql):
|
||||
return duckdb_query_readonly(db_path, sql)
|
||||
|
||||
return query_fn, table
|
||||
|
||||
|
||||
def _null_mask(profile: dict, ctx: dict):
|
||||
"""Build the per-row is-null mask ``{col: [0/1, ...]}``.
|
||||
|
||||
Tries a single DuckDB push-down over ALL columns first (so categorical
|
||||
columns like Cabin are covered, not only numeric ones); falls back to the
|
||||
numeric-only ``ctx['raw_numeric']`` (None -> missing); returns ``(None, 0,
|
||||
None)`` when neither is reachable. Never raises.
|
||||
Returns ``(mask, n_sampled, source)`` with source in {"db","raw_numeric"}.
|
||||
"""
|
||||
cols = profile.get("columns") or []
|
||||
names = [c.get("name") for c in cols
|
||||
if isinstance(c, dict) and c.get("name")]
|
||||
# 1) DuckDB push-down over every column (covers categoricals too).
|
||||
query_fn, table = _build_query_fn(ctx)
|
||||
if query_fn is not None and names:
|
||||
try:
|
||||
from datascience.extract_null_mask import extract_null_mask
|
||||
|
||||
res = extract_null_mask(query_fn, table, names, max_rows=MASK_SAMPLE)
|
||||
if isinstance(res, dict) and res.get("status") == "ok":
|
||||
mask = res.get("mask") or {}
|
||||
if mask:
|
||||
return mask, int(res.get("n") or 0), "db"
|
||||
except Exception: # noqa: BLE001 — degrade to raw_numeric.
|
||||
pass
|
||||
# 2) Fallback: numeric-only mask derived from raw_numeric (None -> missing).
|
||||
rn = ctx.get("raw_numeric")
|
||||
if isinstance(rn, dict) and rn:
|
||||
mask = {}
|
||||
for col, vals in rn.items():
|
||||
if isinstance(vals, (list, tuple)):
|
||||
mask[col] = [1 if v is None else 0 for v in vals]
|
||||
if mask:
|
||||
n = max((len(v) for v in mask.values()), default=0)
|
||||
return mask, n, "raw_numeric"
|
||||
return None, 0, None
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Lazy registry delegations (each degrades to None on any failure).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _overview(mask: dict):
|
||||
try:
|
||||
from datascience.missingness_overview import missingness_overview
|
||||
|
||||
out = missingness_overview(mask)
|
||||
return out if isinstance(out, dict) else None
|
||||
except Exception: # noqa: BLE001
|
||||
return None
|
||||
|
||||
|
||||
def _correlation(mask: dict, top_k: int):
|
||||
try:
|
||||
from datascience.missingness_correlation import missingness_correlation
|
||||
|
||||
out = missingness_correlation(mask, top_k=top_k)
|
||||
return out if isinstance(out, dict) else None
|
||||
except Exception: # noqa: BLE001
|
||||
return None
|
||||
|
||||
|
||||
def _row_patterns(mask: dict, top_n: int):
|
||||
try:
|
||||
from datascience.missingness_row_patterns import missingness_row_patterns
|
||||
|
||||
out = missingness_row_patterns(mask, top_n=top_n)
|
||||
return out if isinstance(out, dict) else None
|
||||
except Exception: # noqa: BLE001
|
||||
return None
|
||||
|
||||
|
||||
def _rank_bar_make(names, pcts, title):
|
||||
def make():
|
||||
try:
|
||||
from datascience.missingness_rank_bar_figure import (
|
||||
missingness_rank_bar_figure,
|
||||
)
|
||||
|
||||
return missingness_rank_bar_figure(names, pcts, title=title)
|
||||
except Exception: # noqa: BLE001 — minimal fallback figure.
|
||||
return _fallback_fig("ranking de nulos no disponible")
|
||||
|
||||
return make
|
||||
|
||||
|
||||
def _heatmap_make(matrix, labels, title):
|
||||
def make():
|
||||
try:
|
||||
from datascience.missingness_corr_heatmap_figure import (
|
||||
missingness_corr_heatmap_figure,
|
||||
)
|
||||
|
||||
return missingness_corr_heatmap_figure(matrix, labels, title=title)
|
||||
except Exception: # noqa: BLE001 — minimal fallback figure.
|
||||
return _fallback_fig("heatmap de co-ocurrencia no disponible")
|
||||
|
||||
return make
|
||||
|
||||
|
||||
def _fallback_fig(message: str):
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
from matplotlib.figure import Figure
|
||||
|
||||
fig = Figure(figsize=(5.0, 2.2))
|
||||
ax = fig.add_subplot(111)
|
||||
ax.text(0.5, 0.5, message, ha="center", va="center")
|
||||
ax.axis("off")
|
||||
return fig
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Block builders.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _summary_block(profile: dict, with_nulls: list, overview, sampled, n_total):
|
||||
rows = []
|
||||
gpct = _global_missing_pct(profile)
|
||||
rows.append(("Celdas faltantes (global)", _fmt_pct(gpct)))
|
||||
rows.append(("Columnas con faltantes", str(len(with_nulls))))
|
||||
all_null = profile.get("all_null_cols")
|
||||
if isinstance(all_null, (list, tuple)) and all_null:
|
||||
rows.append(("Columnas 100% faltantes", str(len(all_null))))
|
||||
if isinstance(overview, dict):
|
||||
cr = overview.get("complete_rows")
|
||||
ir = overview.get("incomplete_rows")
|
||||
suffix = ""
|
||||
if (isinstance(sampled, int) and isinstance(n_total, (int, float))
|
||||
and sampled and n_total and sampled < n_total):
|
||||
suffix = f" (sobre muestra de {_fmt_int(sampled)} filas)"
|
||||
if cr is not None:
|
||||
rows.append(("Filas completas (sin faltantes)",
|
||||
f"{_fmt_int(cr)} ({_fmt_pct(overview.get('complete_pct'))})"
|
||||
+ suffix))
|
||||
if ir is not None:
|
||||
rows.append(("Filas con ≥1 faltante",
|
||||
f"{_fmt_int(ir)} "
|
||||
f"({_fmt_pct(overview.get('incomplete_pct'))})" + suffix))
|
||||
return model.KVTable(rows=rows, title="Resumen de datos faltantes")
|
||||
|
||||
|
||||
def _ranking_block(with_nulls: list):
|
||||
header = ["Columna", "Faltantes", "% faltante"]
|
||||
rows = [[_truncate(n), _fmt_int(c), _fmt_pct(p)] for (n, c, p) in with_nulls]
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(
|
||||
header=header, rows=rows, title="Faltantes por columna",
|
||||
note="ordenado de más a menos faltante")
|
||||
|
||||
|
||||
def _ranking_figure(with_nulls: list):
|
||||
names = [n for (n, _, p) in with_nulls if p is not None]
|
||||
pcts = [p for (_, _, p) in with_nulls if p is not None]
|
||||
if not names:
|
||||
return None
|
||||
return model.Figure(
|
||||
make=_rank_bar_make(names, pcts, "% de valores faltantes por columna"),
|
||||
caption="Porcentaje de valores faltantes por columna (barras).")
|
||||
|
||||
|
||||
def _pairs_block(corr: dict):
|
||||
"""Top column pairs whose absences co-occur, as a table, or None."""
|
||||
pairs = (corr or {}).get("pairs") or []
|
||||
header = ["Columna A", "Columna B", "Corr. ausencia", "Co-faltan", "Jaccard"]
|
||||
rows = []
|
||||
for p in pairs[:_TOP_PAIRS]:
|
||||
if not isinstance(p, dict):
|
||||
continue
|
||||
rows.append([
|
||||
_truncate(p.get("a")),
|
||||
_truncate(p.get("b")),
|
||||
_fmt_num(p.get("corr")),
|
||||
_fmt_int(p.get("co_missing")),
|
||||
_fmt_num(p.get("jaccard")),
|
||||
])
|
||||
if not rows:
|
||||
return None
|
||||
shown = len(rows)
|
||||
total = len(pairs)
|
||||
note = ("correlación de las máscaras is-null entre columnas; "
|
||||
"«Co-faltan» = nº de filas en que ambas faltan a la vez")
|
||||
if total > shown:
|
||||
note += f" — top {shown} de {total} pares"
|
||||
return model.DataTable(header=header, rows=rows,
|
||||
title="Pares de columnas que co-faltan", note=note)
|
||||
|
||||
|
||||
def _heatmap_block(corr: dict):
|
||||
cols = (corr or {}).get("columns") or []
|
||||
matrix = (corr or {}).get("matrix") or []
|
||||
if len(cols) < 2 or not matrix:
|
||||
return None
|
||||
labels = [_truncate(c, 16) for c in cols]
|
||||
return model.Figure(
|
||||
make=_heatmap_make(matrix, labels, "Co-ocurrencia de ausencias"),
|
||||
caption=("Correlación de las ausencias entre columnas (azul = faltan "
|
||||
"juntas; rojo = cuando una falta la otra tiende a estar)."))
|
||||
|
||||
|
||||
def _patterns_block(patterns_res: dict):
|
||||
patterns = (patterns_res or {}).get("patterns") or []
|
||||
header = ["Columnas que faltan juntas", "Filas", "%"]
|
||||
rows = []
|
||||
for p in patterns[:_TOP_PATTERNS]:
|
||||
if not isinstance(p, dict):
|
||||
continue
|
||||
cols = p.get("missing_cols") or []
|
||||
if cols:
|
||||
label = ", ".join(_truncate(c, 18) for c in cols)
|
||||
else:
|
||||
label = "(fila completa — sin faltantes)"
|
||||
rows.append([label, _fmt_int(p.get("n_rows")), _fmt_pct(p.get("pct"))])
|
||||
if not rows:
|
||||
return None
|
||||
total = (patterns_res or {}).get("n_patterns")
|
||||
shown = len(rows)
|
||||
note = "cada fila es un patrón de «qué columnas faltan juntas»"
|
||||
if isinstance(total, int) and total > shown:
|
||||
note += f" — top {shown} de {total} patrones distintos"
|
||||
return model.DataTable(header=header, rows=rows,
|
||||
title="Patrones de fila más comunes", note=note)
|
||||
|
||||
|
||||
def _mcar_mar_note(corr: dict, mark: bool):
|
||||
"""Interpretive, exploratory MCAR/MAR note from the absence correlations.
|
||||
|
||||
Reads the absence correlations at two levels so the verdict never contradicts
|
||||
the visible evidence: a *strong* correlation flags a clear non-random (MAR)
|
||||
pattern; a *partial* overlap (many rows co-miss — high Jaccard — even if the
|
||||
correlation is diluted by one column being missing far more often) flags a
|
||||
localized possible-MAR and cites the concrete co-missing pair; only when
|
||||
neither holds does it read the absences as compatible with MCAR."""
|
||||
|
||||
def _pairs_with(attr_ok):
|
||||
out = []
|
||||
for p in (corr or {}).get("pairs") or []:
|
||||
if isinstance(p, dict) and attr_ok(p):
|
||||
out.append(p)
|
||||
return out
|
||||
|
||||
def _cf(v):
|
||||
try:
|
||||
return float(v)
|
||||
except (TypeError, ValueError):
|
||||
return 0.0
|
||||
|
||||
strong = _pairs_with(lambda p: abs(_cf(p.get("corr"))) >= _CORR_STRONG)
|
||||
partial = _pairs_with(
|
||||
lambda p: _cf(p.get("corr")) > 0 and _cf(p.get("jaccard")) >= _JACCARD_NOTABLE)
|
||||
mcar = _term("mcar", "MCAR", mark)
|
||||
mar = _term("mar", "MAR", mark)
|
||||
head = (
|
||||
"**Lectura exploratoria MCAR/MAR.** Esta es una heurística basada en la "
|
||||
"correlación de las ausencias entre columnas, NO un test confirmatorio "
|
||||
"(como el de Little); orienta, no demuestra. ")
|
||||
if strong:
|
||||
top = strong[0]
|
||||
ev = (f"«{model._safe_str(top.get('a'))}» y "
|
||||
f"«{model._safe_str(top.get('b'))}» "
|
||||
f"(corr {_fmt_num(top.get('corr'))})")
|
||||
body = (
|
||||
f"Hay ausencias que co-ocurren con fuerza —{ev}—: las columnas no "
|
||||
f"faltan de forma independiente, lo que es un indicio de un patrón no "
|
||||
f"aleatorio ({mar}). Antes de imputar o descartar filas conviene "
|
||||
f"comprobar si la ausencia depende de otra variable observada; en ese "
|
||||
f"caso la imputación debería condicionar en ella para no sesgar.")
|
||||
elif partial:
|
||||
top = max(partial, key=lambda p: _cf(p.get("jaccard")))
|
||||
ev = (f"«{model._safe_str(top.get('a'))}» y "
|
||||
f"«{model._safe_str(top.get('b'))}» faltan a la vez en "
|
||||
f"{_fmt_int(top.get('co_missing'))} filas "
|
||||
f"(Jaccard {_fmt_num(top.get('jaccard'))})")
|
||||
body = (
|
||||
f"Hay co-ocurrencia parcial de ausencias —{ev}—: algunas columnas "
|
||||
f"tienden a faltar juntas aunque la correlación global sea modesta "
|
||||
f"(habitual cuando una columna falta mucho más que la otra). Es un "
|
||||
f"indicio de un posible patrón localizado no aleatorio ({mar}); "
|
||||
f"conviene revisar si esa ausencia depende de otra variable observada "
|
||||
f"antes de imputar, en lugar de asumir que faltan al azar.")
|
||||
else:
|
||||
body = (
|
||||
f"Las ausencias entre columnas no muestran correlación ni solape "
|
||||
f"relevante: parecen independientes, lo que es compatible con que "
|
||||
f"falten al azar ({mcar}). Aun así, la ausencia podría depender de "
|
||||
f"variables no observadas (la heurística no lo descarta).")
|
||||
return model.Markdown(text=head + body)
|
||||
|
||||
|
||||
def _intro_block(mark: bool, source):
|
||||
missingness = _term("missingness", "missingness", mark)
|
||||
text = (
|
||||
f"Este capítulo analiza el {missingness} de la tabla: no solo cuánto "
|
||||
"falta (eso lo cubre la calidad), sino DÓNDE falta y si las columnas "
|
||||
"faltan juntas. La co-ocurrencia de ausencias se calcula sobre la matriz "
|
||||
"binaria «is-null» por fila.")
|
||||
if source == "raw_numeric":
|
||||
text += (" Nota: no se pudo leer la tabla cruda completa, así que la "
|
||||
"co-ocurrencia se limita a las columnas numéricas disponibles.")
|
||||
return model.Markdown(text=text)
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Entry point.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def build_missingness(profile: dict, ctx: dict):
|
||||
"""Build the missingness Chapter, or None if the table has no missing data."""
|
||||
if not isinstance(profile, dict):
|
||||
profile = {}
|
||||
ctx = ctx or {}
|
||||
|
||||
with_nulls = _columns_with_nulls(profile)
|
||||
if not with_nulls:
|
||||
return None # no missing data anywhere -> chapter does not apply.
|
||||
|
||||
# Register glossary terms (if a collector is present) and mark them clickable.
|
||||
glossary = ctx.get("glossary")
|
||||
mark = False
|
||||
if isinstance(glossary, model.GlossaryCollector):
|
||||
for key, (label, definition) in _TERMS.items():
|
||||
glossary.add(key, label, definition)
|
||||
mark = True
|
||||
|
||||
# Per-row is-null mask (sample) for co-occurrence and row patterns.
|
||||
mask, sampled, source = _null_mask(profile, ctx)
|
||||
overview = _overview(mask) if mask else None
|
||||
n_total = profile.get("n_rows")
|
||||
|
||||
blocks = [
|
||||
model.Heading(text="Cuánto y dónde faltan datos", level=2),
|
||||
_intro_block(mark, source),
|
||||
_summary_block(profile, with_nulls, overview, sampled, n_total),
|
||||
model.Heading(text="Faltantes por columna", level=2),
|
||||
]
|
||||
ranking = _ranking_block(with_nulls)
|
||||
if ranking is not None:
|
||||
blocks.append(ranking)
|
||||
rank_fig = _ranking_figure(with_nulls)
|
||||
if rank_fig is not None:
|
||||
blocks.append(rank_fig)
|
||||
|
||||
# Co-occurrence + row patterns need the per-row mask. Without it, say so.
|
||||
if not mask:
|
||||
blocks.append(model.Note(
|
||||
"No se pudo construir la matriz «is-null» por fila (sin acceso a los "
|
||||
"datos crudos), así que no se analiza la co-ocurrencia de ausencias "
|
||||
"ni los patrones de fila en este informe."))
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
corr = _correlation(mask, _TOP_PAIRS) or {}
|
||||
co_blocks = [model.Heading(text="Co-ocurrencia de ausencias", level=2)]
|
||||
heatmap = _heatmap_block(corr)
|
||||
if heatmap is not None:
|
||||
co_blocks.append(heatmap)
|
||||
pairs = _pairs_block(corr)
|
||||
if pairs is not None:
|
||||
co_blocks.append(pairs)
|
||||
if heatmap is None and pairs is None:
|
||||
co_blocks.append(model.Note(
|
||||
"Ninguna pareja de columnas comparte ausencias con variación "
|
||||
"suficiente para correlacionarlas (p. ej. una sola columna con "
|
||||
"faltantes), así que no hay co-ocurrencia que mostrar."))
|
||||
# Keep the co-occurrence heading next to its heatmap and table.
|
||||
blocks.append(model.Group(blocks=co_blocks))
|
||||
|
||||
patterns_res = _row_patterns(mask, _TOP_PATTERNS) or {}
|
||||
patterns = _patterns_block(patterns_res)
|
||||
if patterns is not None:
|
||||
blocks.append(model.Heading(text="Patrones de fila", level=2))
|
||||
blocks.append(patterns)
|
||||
|
||||
blocks.append(model.Heading(text="Lectura MCAR / MAR", level=2))
|
||||
blocks.append(_mcar_mar_note(corr, mark))
|
||||
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
@@ -0,0 +1,162 @@
|
||||
"""Tests for the MISSINGNESS chapter.
|
||||
|
||||
Covers the Definition of Done for this chapter:
|
||||
* Activates (non-None Chapter with the expected sections) when the profile has
|
||||
missing data, building the co-occurrence from the per-row is-null mask.
|
||||
* Returns None when the table has no missing data at all (edge case).
|
||||
* Registers the MCAR/MAR/missingness glossary terms.
|
||||
* The DuckDB push-down path covers categorical columns (not only numeric),
|
||||
so a categorical column that co-misses with a numeric one is detected.
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
_HERE = os.path.dirname(os.path.abspath(__file__))
|
||||
_FUNCTIONS = os.path.abspath(os.path.join(_HERE, "..", "..", "..")) # python/functions
|
||||
if _FUNCTIONS not in sys.path:
|
||||
sys.path.insert(0, _FUNCTIONS)
|
||||
|
||||
from datascience.automatic_eda import model # noqa: E402
|
||||
from datascience.automatic_eda.chapters.missingness import ( # noqa: E402
|
||||
build_missingness,
|
||||
)
|
||||
|
||||
|
||||
def _titles(chapter):
|
||||
"""Collect heading texts and table/figure titles for assertions."""
|
||||
out = []
|
||||
for b in chapter.blocks:
|
||||
kind = getattr(b, "kind", None)
|
||||
if kind == "heading":
|
||||
out.append(("heading", getattr(b, "text", "")))
|
||||
elif kind in ("data_table", "kv_table"):
|
||||
out.append((kind, getattr(b, "title", "")))
|
||||
elif kind == "group":
|
||||
for inner in getattr(b, "blocks", []):
|
||||
ik = getattr(inner, "kind", None)
|
||||
if ik == "heading":
|
||||
out.append(("heading", getattr(inner, "text", "")))
|
||||
elif ik in ("data_table", "kv_table"):
|
||||
out.append((ik, getattr(inner, "title", "")))
|
||||
elif ik == "figure":
|
||||
out.append(("figure", getattr(inner, "caption", "")))
|
||||
elif kind == "figure":
|
||||
out.append(("figure", getattr(b, "caption", "")))
|
||||
return out
|
||||
|
||||
|
||||
def _all_text(chapter):
|
||||
parts = []
|
||||
def walk(blocks):
|
||||
for b in blocks:
|
||||
for attr in ("text", "title", "note", "caption"):
|
||||
v = getattr(b, attr, None)
|
||||
if v:
|
||||
parts.append(str(v))
|
||||
if getattr(b, "kind", None) == "group":
|
||||
walk(getattr(b, "blocks", []))
|
||||
walk(chapter.blocks)
|
||||
return "\n".join(parts)
|
||||
|
||||
|
||||
def test_returns_none_when_no_missing_data():
|
||||
profile = {
|
||||
"n_rows": 4,
|
||||
"null_cell_pct": 0.0,
|
||||
"columns": [
|
||||
{"name": "a", "null_count": 0, "null_pct": 0.0, "n_rows": 4},
|
||||
{"name": "b", "null_count": 0, "null_pct": 0.0, "n_rows": 4},
|
||||
],
|
||||
}
|
||||
assert build_missingness(profile, {}) is None
|
||||
|
||||
|
||||
def test_activates_with_cooccurrence_via_raw_numeric():
|
||||
# a and b are missing in EXACTLY the same rows (0,1,2) -> perfect absence
|
||||
# correlation. c has no nulls. No db_path -> the chapter falls back to the
|
||||
# numeric raw_numeric mask.
|
||||
profile = {
|
||||
"n_rows": 6,
|
||||
"null_cell_pct": (0.5 + 0.5 + 0.0) / 3.0,
|
||||
"columns": [
|
||||
{"name": "a", "null_count": 3, "null_pct": 0.5, "n_rows": 6},
|
||||
{"name": "b", "null_count": 3, "null_pct": 0.5, "n_rows": 6},
|
||||
{"name": "c", "null_count": 0, "null_pct": 0.0, "n_rows": 6},
|
||||
],
|
||||
}
|
||||
glossary = model.GlossaryCollector()
|
||||
ctx = {
|
||||
"raw_numeric": {
|
||||
"a": [None, None, None, 1.0, 2.0, 3.0],
|
||||
"b": [None, None, None, 4.0, 5.0, 6.0],
|
||||
},
|
||||
"glossary": glossary,
|
||||
}
|
||||
ch = build_missingness(profile, ctx)
|
||||
assert ch is not None
|
||||
assert ch.id == "missingness"
|
||||
assert ch.blocks
|
||||
|
||||
titles = _titles(ch)
|
||||
headings = {t for (k, t) in titles if k == "heading"}
|
||||
# Core sections present.
|
||||
assert any("Cuánto y dónde" in h for h in headings)
|
||||
assert any("Faltantes por columna" in h for h in headings)
|
||||
assert any("Co-ocurrencia" in h for h in headings)
|
||||
assert any("MCAR" in h for h in headings)
|
||||
# A summary KVTable, a ranking DataTable, a co-occurrence figure and the
|
||||
# pairs table all exist.
|
||||
kinds = {k for (k, _) in titles}
|
||||
assert "kv_table" in kinds
|
||||
assert "data_table" in kinds
|
||||
assert "figure" in kinds
|
||||
|
||||
# Glossary terms registered.
|
||||
keys = {t["key"] for t in glossary.terms()}
|
||||
assert {"missingness", "mcar", "mar"} <= keys
|
||||
|
||||
# The MCAR/MAR note reads the co-occurrence; with a perfect overlap it must
|
||||
# flag the non-random (MAR) reading.
|
||||
text = _all_text(ch)
|
||||
assert "MAR" in text
|
||||
|
||||
|
||||
def test_db_pushdown_covers_categorical_column(tmp_path):
|
||||
"""The is-null mask push-down must cover a categorical column, so a
|
||||
categorical that co-misses with a numeric one shows up in the pairs."""
|
||||
import duckdb
|
||||
|
||||
db = str(tmp_path / "miss.duckdb")
|
||||
con = duckdb.connect(db)
|
||||
con.execute("CREATE TABLE t (num1 DOUBLE, num2 DOUBLE, cat VARCHAR)")
|
||||
# num1 and cat are NULL together in the first 4 of 10 rows; num2 never null.
|
||||
rows = []
|
||||
for i in range(10):
|
||||
if i < 4:
|
||||
rows.append((None, float(i), None))
|
||||
else:
|
||||
rows.append((float(i), float(i), f"c{i}"))
|
||||
con.executemany("INSERT INTO t VALUES (?,?,?)", rows)
|
||||
con.close()
|
||||
|
||||
profile = {
|
||||
"n_rows": 10,
|
||||
"null_cell_pct": (0.4 + 0.0 + 0.4) / 3.0,
|
||||
"columns": [
|
||||
{"name": "num1", "null_count": 4, "null_pct": 0.4, "n_rows": 10},
|
||||
{"name": "num2", "null_count": 0, "null_pct": 0.0, "n_rows": 10},
|
||||
{"name": "cat", "null_count": 4, "null_pct": 0.4, "n_rows": 10},
|
||||
],
|
||||
}
|
||||
ctx = {"db_path": db, "table": "t", "glossary": model.GlossaryCollector()}
|
||||
ch = build_missingness(profile, ctx)
|
||||
assert ch is not None
|
||||
|
||||
# The pairs table must mention both num1 and cat (they co-miss perfectly),
|
||||
# which is only possible if the mask covered the categorical column.
|
||||
text = _all_text(ch)
|
||||
assert "num1" in text and "cat" in text
|
||||
# Co-occurrence section + a pairs data table exist.
|
||||
titles = _titles(ch)
|
||||
assert any("co-faltan" in (t or "").lower() for (k, t) in titles)
|
||||
@@ -6,15 +6,16 @@ normality}``). It renders, as structured markdown/tables/figures that the core
|
||||
paginator never cuts:
|
||||
|
||||
1. **Normalization note** — every multivariate model below standardizes the
|
||||
columns with z-score first; the chapter explains why (different scales would
|
||||
otherwise dominate distance/variance).
|
||||
columns with z-score first (the term is marked clickable; its definition
|
||||
lives in the GLOSARIO chapter, not inline).
|
||||
2. **PCA** — a scree plot (explained + cumulative variance, single Y axis) plus
|
||||
variance and top-loadings tables.
|
||||
3. **KMeans segments** — a PCA scatter **coloured by cluster** (its own
|
||||
page/slide), the cluster-size table, and a per-cluster LLM micro-analysis
|
||||
with a title for each segment.
|
||||
4. **Isolation Forest outliers** — a short explanation of how anomalous rows are
|
||||
isolated multivariately and how the threshold is chosen, plus the counts.
|
||||
4. **Isolation Forest outliers** — the multivariate anomaly counts and decision
|
||||
threshold (the method is marked clickable; its definition lives in the
|
||||
GLOSARIO chapter, not inline).
|
||||
5. **Normality** — per-column Jarque-Bera / D'Agostino / Shapiro verdicts.
|
||||
|
||||
The raw numeric data needed to colour the cluster scatter is **not** in the
|
||||
@@ -55,6 +56,62 @@ _CLUSTER_COLORS = [
|
||||
"#edc948", "#b07aa1", "#ff9da7", "#9c755f", "#bab0ac",
|
||||
]
|
||||
|
||||
# Glossary terms this chapter explains. Each is registered in the shared
|
||||
# collector (ctx['glossary']) and marked clickable on its first appearance — the
|
||||
# canonical two-step pattern (see ``cat_distr``): ``glossary.add(key, label,
|
||||
# definition)`` + the inline span ``[[term:KEY]]texto[[/term]]`` in a Markdown
|
||||
# block. A term is registered only when its section is actually rendered, so the
|
||||
# glossary never lists an entry no in-text appearance points to.
|
||||
_TERM_DEFS = {
|
||||
"zscore": (
|
||||
"Estandarización z-score",
|
||||
"Transformación que lleva cada columna numérica a media 0 y desviación "
|
||||
"típica 1: a cada valor le resta la media de su columna y lo divide por "
|
||||
"la desviación típica. Así variables con escalas muy distintas (euros "
|
||||
"frente a un ratio 0–1) pesan por igual en las distancias y la varianza."),
|
||||
"pca": (
|
||||
"PCA (componentes principales)",
|
||||
"El análisis de componentes principales resume muchas variables "
|
||||
"numéricas correlacionadas en pocos ejes nuevos (componentes), "
|
||||
"ortogonales entre sí y ordenados por la cantidad de varianza que "
|
||||
"capturan. Permite ver la estructura de los datos en 2D y saber cuántas "
|
||||
"dimensiones bastan para explicarlos."),
|
||||
"kmeans": (
|
||||
"KMeans (segmentación)",
|
||||
"Algoritmo de agrupamiento no supervisado que reparte las filas en k "
|
||||
"segmentos: asigna cada fila al centro (centroide) más cercano y recoloca "
|
||||
"los centroides de forma iterativa hasta minimizar la distancia interna "
|
||||
"de cada grupo. Aquí k se elige automáticamente."),
|
||||
"silhouette": (
|
||||
"Coeficiente de silueta (silhouette)",
|
||||
"Métrica de calidad de un agrupamiento, en el rango −1 a 1: para cada "
|
||||
"fila compara cómo de cerca está de su propio segmento frente al segmento "
|
||||
"vecino más próximo. Cuanto más alto el promedio, más compactos y "
|
||||
"separados están los segmentos."),
|
||||
"isolation_forest": (
|
||||
"Isolation Forest (anomalías)",
|
||||
"Algoritmo de detección de anomalías multivariante: construye árboles que "
|
||||
"parten el espacio con cortes aleatorios y mide cuántos cortes hacen "
|
||||
"falta para aislar cada fila. Las filas raras se aíslan con muy pocos "
|
||||
"cortes y se marcan como outliers según un umbral de contaminación."),
|
||||
}
|
||||
|
||||
|
||||
def _term(mark: bool, key: str, text: str) -> str:
|
||||
"""Wrap ``text`` as a clickable glossary span when ``mark`` is True.
|
||||
|
||||
The visible text is identical with or without the marker (the renderers strip
|
||||
it), so wrapping never changes line layout — it only adds the link.
|
||||
"""
|
||||
return f"[[term:{key}]]{text}[[/term]]" if mark else text
|
||||
|
||||
|
||||
def _register(gloss, key: str) -> None:
|
||||
"""Register term ``key`` in the collector (idempotent); no-op if gloss None."""
|
||||
if gloss is not None:
|
||||
label, definition = _TERM_DEFS[key]
|
||||
gloss.add(key, label, definition)
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Formatting helpers (mirror the overview chapter's defensive style).
|
||||
@@ -252,34 +309,33 @@ def _make_cluster_scatter(projection: dict):
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Section builders. Each returns a list of blocks (possibly empty).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _normalization_intro() -> list:
|
||||
def _normalization_intro(gloss=None, mark_term: bool = False) -> list:
|
||||
_register(gloss, "zscore")
|
||||
zscore = _term(mark_term, "zscore", "**estandarizan con z-score**")
|
||||
text = (
|
||||
"Estos modelos son **no supervisados**: buscan estructura latente sin "
|
||||
"una variable objetivo. Antes de aplicarlos, todas las columnas "
|
||||
"numéricas se **estandarizan con z-score** (cada valor menos la media, "
|
||||
"dividido por la desviación típica). Sin esta normalización, una "
|
||||
"variable con escala grande (p.ej. ingresos en euros) dominaría las "
|
||||
"distancias y la varianza frente a otra de escala pequeña (p.ej. un "
|
||||
"ratio entre 0 y 1), sesgando tanto el PCA como el KMeans. Tras la "
|
||||
"estandarización todas las variables pesan por igual."
|
||||
f"numéricas se {zscore}, para que todas pesen por igual con "
|
||||
"independencia de su escala."
|
||||
)
|
||||
return [model.Heading(text="Modelos no supervisados", level=1),
|
||||
model.Markdown(text=text)]
|
||||
|
||||
|
||||
def _pca_section(pca: dict) -> list:
|
||||
def _pca_section(pca: dict, gloss=None, mark_term: bool = False) -> list:
|
||||
if not _is_dict(pca) or not pca.get("explained_variance_ratio"):
|
||||
return []
|
||||
_register(gloss, "pca")
|
||||
blocks = [model.Heading(text="PCA — varianza explicada", level=2)]
|
||||
|
||||
n_used = pca.get("n_rows_used")
|
||||
n_feat = pca.get("n_features")
|
||||
intro = (
|
||||
f"El PCA resume {_fmt_num(n_feat)} variables numéricas en componentes "
|
||||
f"ortogonales ordenados por la varianza que capturan "
|
||||
f"({_fmt_num(n_used)} filas usadas tras eliminar nulos). El gráfico de "
|
||||
"sedimentación (scree) muestra cuánta varianza aporta cada componente y "
|
||||
"su acumulado: un codo marca cuántos componentes bastan."
|
||||
f"El {_term(mark_term, 'pca', 'PCA')} se aplica sobre "
|
||||
f"{_fmt_num(n_feat)} variables numéricas ({_fmt_num(n_used)} filas "
|
||||
"usadas tras eliminar nulos). El gráfico de sedimentación (scree) "
|
||||
"muestra cuánta varianza aporta cada componente y su acumulado: un "
|
||||
"codo marca cuántos componentes bastan."
|
||||
)
|
||||
blocks.append(model.Markdown(text=intro))
|
||||
|
||||
@@ -325,11 +381,14 @@ def _pca_section(pca: dict) -> list:
|
||||
return blocks
|
||||
|
||||
|
||||
def _kmeans_section(kmeans: dict, projection: dict, titles) -> list:
|
||||
def _kmeans_section(kmeans: dict, projection: dict, titles,
|
||||
gloss=None, mark_term: bool = False) -> list:
|
||||
has_km = _is_dict(kmeans) and kmeans.get("best_k")
|
||||
has_proj = _is_dict(projection) and projection.get("points")
|
||||
if not has_km and not has_proj:
|
||||
return []
|
||||
_register(gloss, "kmeans")
|
||||
_register(gloss, "silhouette")
|
||||
|
||||
blocks = [model.Heading(text="Segmentación (KMeans)", level=2)]
|
||||
|
||||
@@ -337,11 +396,12 @@ def _kmeans_section(kmeans: dict, projection: dict, titles) -> list:
|
||||
sil = (projection or {}).get("silhouette")
|
||||
if sil is None:
|
||||
sil = (kmeans or {}).get("silhouette")
|
||||
t_kmeans = _term(mark_term, "kmeans", "KMeans")
|
||||
t_sil = _term(mark_term, "silhouette", "*silhouette*")
|
||||
intro = (
|
||||
f"KMeans agrupa las filas en **{_fmt_num(best_k)} segmentos** elegidos "
|
||||
"automáticamente maximizando el coeficiente de *silhouette* "
|
||||
f"(**{_fmt_num(sil)}**, rango −1 a 1: cuanto más alto, segmentos más "
|
||||
"compactos y separados). Los segmentos se proyectan sobre el plano de "
|
||||
f"{t_kmeans} agrupa las filas en **{_fmt_num(best_k)} segmentos** "
|
||||
f"elegidos automáticamente por el coeficiente de {t_sil} "
|
||||
f"(**{_fmt_num(sil)}**). Los segmentos se proyectan sobre el plano de "
|
||||
"los dos primeros componentes principales para visualizarlos."
|
||||
)
|
||||
blocks.append(model.Markdown(text=intro))
|
||||
@@ -394,23 +454,21 @@ def _kmeans_section(kmeans: dict, projection: dict, titles) -> list:
|
||||
return blocks
|
||||
|
||||
|
||||
def _outliers_section(outliers: dict) -> list:
|
||||
def _outliers_section(outliers: dict, gloss=None, mark_term: bool = False) -> list:
|
||||
if not _is_dict(outliers) or outliers.get("n_outliers") is None:
|
||||
return []
|
||||
if outliers.get("note") and not outliers.get("n_rows_used"):
|
||||
# insufficient data — nothing meaningful to show.
|
||||
return []
|
||||
_register(gloss, "isolation_forest")
|
||||
blocks = [model.Heading(text="Detección de anomalías (Isolation Forest)",
|
||||
level=2)]
|
||||
isof = _term(mark_term, "isolation_forest", "**Isolation Forest**")
|
||||
explain = (
|
||||
"**Isolation Forest** detecta filas anómalas de forma *multivariante*: "
|
||||
"construye árboles que parten el espacio con cortes aleatorios y mide "
|
||||
"cuántos cortes hacen falta para aislar cada fila. Las filas raras "
|
||||
"(combinaciones de valores poco frecuentes considerando **todas las "
|
||||
"columnas a la vez**, no una sola) se aíslan con muy pocos cortes y "
|
||||
"obtienen un score bajo. El **umbral** de decisión separa las filas "
|
||||
"normales de las anómalas según la contaminación esperada del modelo: "
|
||||
"una fila es outlier cuando su score queda por debajo de ese umbral."
|
||||
f"{isof} marca filas anómalas de forma *multivariante*: combinaciones "
|
||||
"de valores poco frecuentes considerando **todas las columnas a la "
|
||||
"vez**, no una sola. La tabla resume cuántas se detectaron y el umbral "
|
||||
"de decisión empleado."
|
||||
)
|
||||
blocks.append(model.Markdown(text=explain))
|
||||
blocks.append(model.KVTable(rows=[
|
||||
@@ -484,15 +542,21 @@ def build_modelos(profile: dict, ctx: dict):
|
||||
(kmeans and kmeans.get("best_k")) or (projection and projection.get("points"))
|
||||
) else None
|
||||
|
||||
# Shared glossary collector: terms are registered + marked clickable inside
|
||||
# each section, only when that section actually renders (no orphan entries).
|
||||
glossary = ctx.get("glossary")
|
||||
gloss = glossary if isinstance(glossary, model.GlossaryCollector) else None
|
||||
mark_term = gloss is not None
|
||||
|
||||
sections = []
|
||||
sections += _pca_section(pca) if pca else []
|
||||
sections += _kmeans_section(kmeans, projection, titles)
|
||||
sections += _outliers_section(outliers) if outliers else []
|
||||
sections += _pca_section(pca, gloss, mark_term) if pca else []
|
||||
sections += _kmeans_section(kmeans, projection, titles, gloss, mark_term)
|
||||
sections += _outliers_section(outliers, gloss, mark_term) if outliers else []
|
||||
sections += _normality_section(normality) if normality else []
|
||||
|
||||
if not sections:
|
||||
return None # models block present but nothing renderable.
|
||||
|
||||
blocks = _normalization_intro() + sections
|
||||
blocks = _normalization_intro(gloss, mark_term) + sections
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
@@ -257,3 +257,26 @@ def test_anticortes_tabla_normalidad_larga_no_corta():
|
||||
# Every column name survives (wrapped/split, never truncated).
|
||||
for i in (0, 19, 39):
|
||||
assert f"col_{i}" in txt
|
||||
|
||||
|
||||
def test_glosario_engancha_terminos_modelos():
|
||||
"""Mejora 4b: PCA, KMeans, silhouette, Isolation Forest y la estandarización
|
||||
z-score se registran en el colector compartido y se marcan clicables en el
|
||||
cuerpo. Sin colector en ctx, el capítulo degrada y no marca nada."""
|
||||
from datascience.automatic_eda.model import GlossaryCollector
|
||||
|
||||
g = GlossaryCollector()
|
||||
ctx = dict(_ctx_full())
|
||||
ctx["glossary"] = g
|
||||
ch = build_modelos(_profile(), ctx)
|
||||
assert ch is not None
|
||||
keys = {t["key"] for t in g.terms()}
|
||||
assert {"zscore", "pca", "kmeans", "silhouette", "isolation_forest"} <= keys
|
||||
body = " ".join(b.text for b in ch.blocks if b.kind == "markdown")
|
||||
for k in ("zscore", "pca", "kmeans", "silhouette", "isolation_forest"):
|
||||
assert f"[[term:{k}]]" in body, k
|
||||
|
||||
# Sin colector: degrada limpio (ningún marcador en el cuerpo).
|
||||
ch2 = build_modelos(_profile(), _ctx_full())
|
||||
body2 = " ".join(b.text for b in ch2.blocks if b.kind == "markdown")
|
||||
assert "[[term:" not in body2
|
||||
|
||||
@@ -1,9 +1,10 @@
|
||||
"""Numeric distributions chapter (NUM DISTR) for AutomaticEDA.
|
||||
|
||||
For every numeric column the chapter draws, as a single indivisible figure, a
|
||||
histogram with the **mean, median and ±1σ band drawn as reference lines** and a
|
||||
**Tukey boxplot right below it** sharing the same X axis — exactly the user
|
||||
requirement for this chapter. Each figure is emitted as a lazy ``Figure`` block
|
||||
histogram with the **mean, median and ±1σ band drawn as reference lines** (the
|
||||
legend reports the numeric value of the mean, the median **and the standard
|
||||
deviation σ**) and a **Tukey boxplot right below it** sharing the same X axis —
|
||||
exactly the user requirement for this chapter. Each figure is emitted as a lazy ``Figure`` block
|
||||
so the renderers rasterize and scale it to fit a whole page/slide and nothing is
|
||||
ever cut; columns with many numerics simply flow across pages as small
|
||||
multiples.
|
||||
@@ -34,7 +35,7 @@ try:
|
||||
except Exception: # noqa: BLE001 — keep the chapter importable no matter what.
|
||||
build_boxplot_stats = None # type: ignore[assignment]
|
||||
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_VERSION = "1.2.0"
|
||||
CHAPTER_ID = "num_distr"
|
||||
CHAPTER_TITLE = "Distribuciones numéricas"
|
||||
|
||||
@@ -140,9 +141,11 @@ def _make_hist_box(name: str, numeric: dict, box: dict):
|
||||
std = numeric.get("std")
|
||||
|
||||
# ±1σ band first (behind the lines), then median (solid) and mean (dashed).
|
||||
# The band's legend entry also reports the numeric value of the standard
|
||||
# deviation, so the reader sees mean, median AND σ at a glance.
|
||||
if mean is not None and std is not None and std > 0:
|
||||
ax_h.axvspan(mean - std, mean + std, color="#f0c27b", alpha=0.22,
|
||||
zorder=1, label="±1σ")
|
||||
zorder=1, label=f"±1σ (σ = {_fmt_num(std)})")
|
||||
if median is not None:
|
||||
ax_h.axvline(median, color="#2e8b57", linestyle="-", linewidth=1.6,
|
||||
zorder=4, label=f"mediana = {_fmt_num(median)}")
|
||||
@@ -152,7 +155,19 @@ def _make_hist_box(name: str, numeric: dict, box: dict):
|
||||
|
||||
ax_h.set_ylabel("frecuencia", fontsize=8)
|
||||
ax_h.tick_params(labelsize=7)
|
||||
ax_h.legend(fontsize=6.5, loc="upper right", framealpha=0.85)
|
||||
# Always surface σ in the legend: if the ±1σ band could not be drawn (no mean
|
||||
# or std<=0) but σ is still known, add a label-only proxy handle so the value
|
||||
# of the standard deviation is reported regardless of the band.
|
||||
handles, labels = ax_h.get_legend_handles_labels()
|
||||
if std is not None and not any("σ =" in lbl for lbl in labels):
|
||||
from matplotlib.lines import Line2D
|
||||
proxy = Line2D([], [], linestyle="none", marker="",
|
||||
label=f"σ = {_fmt_num(std)}")
|
||||
handles.append(proxy)
|
||||
labels.append(f"σ = {_fmt_num(std)}")
|
||||
if handles:
|
||||
ax_h.legend(handles, labels, fontsize=6.5, loc="upper right",
|
||||
framealpha=0.85)
|
||||
for spine in ("top", "right"):
|
||||
ax_h.spines[spine].set_visible(False)
|
||||
|
||||
|
||||
@@ -159,6 +159,50 @@ def test_anti_corte_muchas_columnas_pdf_y_pptx():
|
||||
assert res_pptx["n_slides"] >= 8 # at least one slide per column figure.
|
||||
|
||||
|
||||
def _hist_legend_texts(numeric, box=None):
|
||||
"""Build the per-column figure and return its histogram-legend label texts."""
|
||||
from datascience.automatic_eda.chapters.num_distr import _make_hist_box
|
||||
import matplotlib.pyplot as plt
|
||||
fig = _make_hist_box("col", numeric, box or {})
|
||||
ax_h = fig.axes[0] # the histogram is the top axis.
|
||||
leg = ax_h.get_legend()
|
||||
texts = [t.get_text() for t in leg.get_texts()] if leg else []
|
||||
plt.close(fig)
|
||||
return texts
|
||||
|
||||
|
||||
def test_golden_leyenda_histograma_reporta_valor_std():
|
||||
# The histogram legend must report the numeric value of the standard
|
||||
# deviation σ next to mean and median.
|
||||
numeric = _numeric_block(42.5, 40.0, 12.3, 1.0, 100.0, "right-skewed", 5)
|
||||
texts = _hist_legend_texts(numeric)
|
||||
joined = " ".join(texts)
|
||||
assert any("σ =" in t for t in texts), f"σ value missing in legend: {texts}"
|
||||
assert "12.3" in joined, f"std value 12.3 not in legend: {texts}"
|
||||
assert any("media =" in t for t in texts)
|
||||
assert any("mediana =" in t for t in texts)
|
||||
|
||||
|
||||
def test_edge_std_en_leyenda_aunque_no_haya_banda():
|
||||
# When the ±1σ band cannot be drawn (no mean) but σ is known, the legend
|
||||
# still surfaces the σ value via a label-only proxy handle.
|
||||
numeric = _numeric_block(42.5, 40.0, 7.5, 1.0, 100.0, "right-skewed", 0)
|
||||
numeric["mean"] = None # forces the band off; σ must still appear.
|
||||
texts = _hist_legend_texts(numeric)
|
||||
assert any("σ = 7.5" in t for t in texts), f"σ proxy missing: {texts}"
|
||||
|
||||
|
||||
def test_edge_sin_std_no_revienta_la_figura():
|
||||
# A numeric block without σ must not raise and simply omits the σ entry.
|
||||
import matplotlib.pyplot as plt
|
||||
numeric = _numeric_block(42.5, 40.0, 0.0, 1.0, 100.0, "discrete", 0)
|
||||
numeric["std"] = None
|
||||
texts = _hist_legend_texts(numeric)
|
||||
assert not any("σ =" in t for t in texts)
|
||||
# mean/median lines still produce their own legend entries.
|
||||
assert any("media =" in t for t in texts)
|
||||
|
||||
|
||||
def test_distribution_gloss_cubre_todas_las_etiquetas():
|
||||
# Every label detect_distribution_type can emit has a Spanish gloss.
|
||||
for label in ("normal-ish", "right-skewed", "left-skewed", "heavy-tail",
|
||||
|
||||
@@ -2,8 +2,17 @@
|
||||
|
||||
Builds the document cover from a TableProfile plus an optional ``ctx`` of
|
||||
presentation metadata. Reads everything defensively (``.get``) and degrades
|
||||
honestly: a field that is neither in the profile nor in ``ctx`` is shown as a
|
||||
placeholder rather than invented, leaving a hook for the LLM layer to fill it.
|
||||
honestly.
|
||||
|
||||
The dataset size (N rows x M columns) is always shown big, as a heading right
|
||||
under the dataset name (kept together in a ``Group``), not buried in the
|
||||
metadata table. The Description and Granularity are resolved through a cascade
|
||||
so they are never empty: an explicit ``ctx`` value wins; otherwise the LLM block
|
||||
(``profile['llm']`` from ``eda_llm_insights``) provides ``summary`` /
|
||||
``row_meaning``; otherwise a short summary is derived from the profile itself
|
||||
(shape, column-type mix, quality score) and a "Cada fila es…" sentence from the
|
||||
key-candidate columns or the table shape. Nothing is invented: the derived
|
||||
fallbacks state that they come from the profile.
|
||||
|
||||
Contract for chapter authors (see ``docs/capabilities/automatic_eda.md``):
|
||||
build_<id>(profile: dict, ctx: dict) -> Chapter | None
|
||||
@@ -17,10 +26,15 @@ from datetime import datetime, timezone
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_VERSION = "1.2.0"
|
||||
CHAPTER_ID = "portada"
|
||||
CHAPTER_TITLE = "Portada"
|
||||
|
||||
# Key under which eda_llm_insights stores its interpretive block in the profile.
|
||||
# The cover reads ``summary`` (what the table is) and ``row_meaning`` (what one
|
||||
# row represents) from it when the LLM layer ran (``run_llm``).
|
||||
_LLM_KEY = "llm"
|
||||
|
||||
# Default human description of what the table quality score measures. Chapters
|
||||
# can override it via ctx["quality_criteria"].
|
||||
_DEFAULT_QUALITY_CRITERIA = (
|
||||
@@ -142,6 +156,88 @@ def _fmt_date_eu(value) -> str:
|
||||
return s
|
||||
|
||||
|
||||
def _llm_block(profile: dict, ctx: dict) -> dict:
|
||||
"""Return the interpretive LLM block (``eda_llm_insights`` output), or {}.
|
||||
|
||||
It is stored under ``profile['llm']`` by ``profile_table(run_llm=True)`` and
|
||||
may also be forwarded in ``ctx['llm']``. Read defensively: anything that is
|
||||
not a dict degrades to an empty dict so the cover never raises.
|
||||
"""
|
||||
block = profile.get(_LLM_KEY)
|
||||
if not isinstance(block, dict):
|
||||
block = ctx.get(_LLM_KEY)
|
||||
return block if isinstance(block, dict) else {}
|
||||
|
||||
|
||||
def _count_column_types(profile: dict, ctx: dict):
|
||||
"""Best-effort (n_numeric, n_categorical) for the dataset.
|
||||
|
||||
Prefers the aggregated ``ctx['document_summary']`` (computed by the engine
|
||||
over the whole body); falls back to counting the profile columns directly so
|
||||
the cover still has the numbers when no summary was passed.
|
||||
"""
|
||||
summary = ctx.get("document_summary")
|
||||
if isinstance(summary, dict):
|
||||
n_num = summary.get("n_numeric")
|
||||
n_cat = summary.get("n_categorical")
|
||||
if n_num is not None or n_cat is not None:
|
||||
return n_num, n_cat
|
||||
cols = profile.get("columns") or []
|
||||
n_num = sum(1 for c in cols if isinstance(c, dict)
|
||||
and c.get("inferred_type") == "numeric")
|
||||
n_cat = sum(1 for c in cols if isinstance(c, dict)
|
||||
and isinstance(c.get("categorical"), dict)
|
||||
and c.get("categorical", {}).get("top")
|
||||
and c.get("inferred_type") != "numeric")
|
||||
return n_num, n_cat
|
||||
|
||||
|
||||
def _derive_description(profile: dict, ctx: dict) -> str:
|
||||
"""A short, honest description of the dataset from the profile.
|
||||
|
||||
Used only when no explicit ``ctx['description']`` and no LLM ``summary`` are
|
||||
available. Summarizes shape, column-type mix and quality score; never empty,
|
||||
never invents business meaning (it states the description was derived)."""
|
||||
n_rows = profile.get("n_rows")
|
||||
n_cols = profile.get("n_cols")
|
||||
n_num, n_cat = _count_column_types(profile, ctx)
|
||||
head = f"Conjunto de datos con {_fmt_int(n_rows)} filas y {_fmt_int(n_cols)} columnas"
|
||||
type_bits = []
|
||||
if n_num:
|
||||
type_bits.append(f"{_fmt_int(n_num)} numéricas")
|
||||
if n_cat:
|
||||
type_bits.append(f"{_fmt_int(n_cat)} categóricas")
|
||||
if type_bits:
|
||||
head += " (" + ", ".join(type_bits) + ")"
|
||||
parts = [head + "."]
|
||||
score = profile.get("quality_score")
|
||||
if score is not None:
|
||||
parts.append(f"Calidad media estimada: {score}/100.")
|
||||
parts.append(
|
||||
"Resumen derivado del perfil; active la interpretación LLM (`run_llm`) "
|
||||
"para una descripción de negocio más rica.")
|
||||
return " ".join(parts)
|
||||
|
||||
|
||||
def _derive_granularity(profile: dict, dataset_name: str) -> str:
|
||||
"""A ``Cada fila es…`` granularity sentence from the profile.
|
||||
|
||||
Prefers the key-candidate columns (a row is identified by them); when no key
|
||||
is detected, falls back to the table shape so the line is always meaningful
|
||||
and starts with ``Cada fila es`` as the user requested."""
|
||||
keys = profile.get("key_candidates") or []
|
||||
if keys:
|
||||
shown = ", ".join(str(k) for k in keys[:3])
|
||||
more = "" if len(keys) <= 3 else f" (y {len(keys) - 3} más)"
|
||||
return (f"Cada fila es un registro identificado por {shown}{more}, "
|
||||
"candidata(s) a clave por ser únicas y sin nulos.")
|
||||
n_rows = profile.get("n_rows")
|
||||
tail = f" El dataset tiene {_fmt_int(n_rows)} filas en total." if n_rows else ""
|
||||
return (f"Cada fila es un registro de «{dataset_name}». No se detectó una "
|
||||
"columna identificadora única, así que la granularidad se infiere "
|
||||
"de la forma de la tabla." + tail)
|
||||
|
||||
|
||||
def build_portada(profile: dict, ctx: dict):
|
||||
"""Build the cover Chapter, or None if there is truly nothing to show."""
|
||||
profile = profile or {}
|
||||
@@ -166,30 +262,38 @@ def build_portada(profile: dict, ctx: dict):
|
||||
quality_criteria = ctx.get("quality_criteria") or _DEFAULT_QUALITY_CRITERIA
|
||||
quality_value = "—" if score is None else f"{score} / 100"
|
||||
|
||||
# Granularity: ctx wins; else derive from key candidates; else be honest.
|
||||
llm = _llm_block(profile, ctx)
|
||||
|
||||
# Granularity: explicit ctx wins; then the LLM "row_meaning"; then the key
|
||||
# candidates; finally a shape-based fallback. Always a real "Cada fila es…".
|
||||
granularity = ctx.get("granularity")
|
||||
if not granularity:
|
||||
keys = profile.get("key_candidates") or []
|
||||
if keys:
|
||||
granularity = ("Cada fila parece identificada por "
|
||||
+ ", ".join(str(k) for k in keys[:3]) + ".")
|
||||
else:
|
||||
granularity = ("Cada fila es… (granularidad no determinada — "
|
||||
"pendiente de la capa de cálculo/LLM).")
|
||||
granularity = (llm.get("row_meaning") or "").strip() or None
|
||||
if not granularity:
|
||||
granularity = _derive_granularity(profile, str(dataset_name))
|
||||
|
||||
# Description: explicit ctx wins; then the LLM "summary"; finally a short
|
||||
# profile-derived summary. Never the old empty placeholder.
|
||||
description = ctx.get("description")
|
||||
if not description:
|
||||
description = ("Descripción no provista — pendiente de la capa LLM "
|
||||
"(`run_llm`) o de `ctx['description']`.")
|
||||
description = (llm.get("summary") or "").strip() or None
|
||||
if not description:
|
||||
description = _derive_description(profile, ctx)
|
||||
|
||||
blocks = [
|
||||
# Title + dataset size shown together and BIG (Heading) at the top, kept on
|
||||
# the same page (Group). The size is no longer buried in the metadata table.
|
||||
cover = [
|
||||
model.Heading(text=str(dataset_name), level=1),
|
||||
model.Markdown(text="**Automatic-EDA** · informe exploratorio automático"),
|
||||
model.Heading(text=shape, level=2),
|
||||
]
|
||||
|
||||
blocks = [
|
||||
model.Group(blocks=cover),
|
||||
model.KVTable(rows=[
|
||||
("Fuente", source_origin),
|
||||
("Almacenamiento", storage),
|
||||
("Generado", when),
|
||||
("Tamaño", shape),
|
||||
("Calidad", quality_value),
|
||||
("Criterios de calidad", quality_criteria),
|
||||
]),
|
||||
|
||||
@@ -0,0 +1,197 @@
|
||||
"""Tests for the PORTADA (cover) chapter — DoD: golden + edges + render.
|
||||
|
||||
Self-contained: builds synthetic TableProfiles (no DuckDB) so the suite is fast
|
||||
and deterministic. Verifies the Fase 4b improvements:
|
||||
|
||||
1. The dataset size (N rows x M columns) is always shown BIG — as a level-2
|
||||
heading kept together with the dataset name in a ``Group`` — and is no longer
|
||||
a row of the metadata table.
|
||||
2. Description and Granularity are resolved through a real cascade and are never
|
||||
the old empty placeholders: an explicit ``ctx`` value wins; otherwise the LLM
|
||||
block (``profile['llm']``) provides ``summary`` / ``row_meaning``; otherwise a
|
||||
short summary is derived from the profile and a "Cada fila es…" sentence from
|
||||
the key-candidate columns or the table shape.
|
||||
3. The chapter degrades without raising on empty/None input.
|
||||
4. It renders inside the full document to both PDF and PPTX showing that content.
|
||||
"""
|
||||
|
||||
import os
|
||||
import re
|
||||
import tempfile
|
||||
|
||||
from pypdf import PdfReader
|
||||
from pptx import Presentation
|
||||
|
||||
from datascience.automatic_eda.model import Group, Heading, KVTable, Markdown
|
||||
from datascience.automatic_eda.chapters.portada import (
|
||||
CHAPTER_ID, CHAPTER_VERSION, build_portada,
|
||||
)
|
||||
from datascience.render_automatic_eda_pdf import render_automatic_eda_pdf
|
||||
from datascience.render_automatic_eda_pptx import render_automatic_eda_pptx
|
||||
|
||||
|
||||
def _profile(with_llm: bool = True, with_keys: bool = True) -> dict:
|
||||
prof = {
|
||||
"table": "titanic",
|
||||
"source": "/data/titanic.csv",
|
||||
"profiled_at": "2026-06-30T10:00:00+00:00",
|
||||
"n_rows": 891,
|
||||
"n_cols": 12,
|
||||
"quality_score": 78.0,
|
||||
"columns": [
|
||||
{"name": "PassengerId", "inferred_type": "numeric",
|
||||
"null_pct": 0.0, "numeric": {"mean": 446.0, "min": 1.0,
|
||||
"max": 891.0, "std": 257.0}},
|
||||
{"name": "Survived", "inferred_type": "numeric",
|
||||
"null_pct": 0.0, "numeric": {"mean": 0.38, "min": 0.0,
|
||||
"max": 1.0, "std": 0.49}},
|
||||
{"name": "Sex", "inferred_type": "categorical", "null_pct": 0.0,
|
||||
"categorical": {"top": [{"value": "male", "count": 577, "pct": 0.65},
|
||||
{"value": "female", "count": 314,
|
||||
"pct": 0.35}],
|
||||
"mode": "male", "n_distinct": 2, "entropy": 0.93}},
|
||||
],
|
||||
}
|
||||
if with_keys:
|
||||
prof["key_candidates"] = ["PassengerId"]
|
||||
if with_llm:
|
||||
prof["llm"] = {
|
||||
"summary": "Pasajeros del Titanic con su supervivencia y datos de viaje.",
|
||||
"row_meaning": "Cada fila es un pasajero del Titanic.",
|
||||
"dictionary": [], "pii": [], "cleaning": [], "analyses": [],
|
||||
}
|
||||
return prof
|
||||
|
||||
|
||||
def _pdf_text(path: str) -> str:
|
||||
txt = "".join((pg.extract_text() or "") for pg in PdfReader(path).pages)
|
||||
return re.sub(r"\s+", " ", txt)
|
||||
|
||||
|
||||
def _pptx_text(path: str) -> str:
|
||||
prs = Presentation(path)
|
||||
parts = []
|
||||
for sl in prs.slides:
|
||||
for sh in sl.shapes:
|
||||
if sh.has_text_frame:
|
||||
parts.append(sh.text_frame.text)
|
||||
if sh.has_table:
|
||||
tb = sh.table
|
||||
for r in range(len(tb.rows)):
|
||||
for c in range(len(tb.columns)):
|
||||
parts.append(tb.cell(r, c).text)
|
||||
return re.sub(r"\s+", " ", " ".join(parts))
|
||||
|
||||
|
||||
def _markdown_after(blocks, heading_text):
|
||||
"""Return the Markdown block that follows a Heading whose text matches."""
|
||||
for i, b in enumerate(blocks):
|
||||
if isinstance(b, Heading) and heading_text.lower() in b.text.lower():
|
||||
for nb in blocks[i + 1:]:
|
||||
if isinstance(nb, Markdown):
|
||||
return nb
|
||||
return None
|
||||
|
||||
|
||||
def test_golden_tamano_grande_y_textos_llm():
|
||||
ch = build_portada(_profile(), {})
|
||||
assert ch is not None
|
||||
assert ch.id == CHAPTER_ID
|
||||
assert ch.version == CHAPTER_VERSION
|
||||
|
||||
# 1) Title + size kept together in a Group; size is a BIG level-2 heading.
|
||||
group = next(b for b in ch.blocks if isinstance(b, Group))
|
||||
inner = group.blocks
|
||||
assert isinstance(inner[0], Heading) and inner[0].level == 1
|
||||
assert inner[0].text == "titanic"
|
||||
size_h = next(b for b in inner if isinstance(b, Heading) and b.level == 2)
|
||||
assert "891" in size_h.text and "12" in size_h.text
|
||||
assert "filas" in size_h.text and "columnas" in size_h.text
|
||||
|
||||
# 2) Size is no longer a row of the metadata table.
|
||||
kv = next(b for b in ch.blocks if isinstance(b, KVTable))
|
||||
labels = [r[0] for r in kv.rows]
|
||||
assert "Tamaño" not in labels
|
||||
assert "Fuente" in labels and "Calidad" in labels
|
||||
|
||||
# 3) Description and Granularity come from the LLM block.
|
||||
desc = _markdown_after(ch.blocks, "Descripción")
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
assert desc is not None and "Titanic" in desc.text
|
||||
assert gran is not None and gran.text.startswith("Cada fila es")
|
||||
assert "pasajero" in gran.text.lower()
|
||||
|
||||
|
||||
def test_fallback_sin_llm_usa_keys_y_perfil():
|
||||
# No LLM block: description derived from the profile, granularity from keys.
|
||||
ch = build_portada(_profile(with_llm=False, with_keys=True), {})
|
||||
desc = _markdown_after(ch.blocks, "Descripción")
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
# Description is the derived summary, never the old "pendiente" placeholder.
|
||||
assert "pendiente" not in desc.text.lower()
|
||||
assert "891" in desc.text and "columnas" in desc.text
|
||||
assert "numéricas" in desc.text or "categóricas" in desc.text
|
||||
# Granularity mentions the key candidate and starts with "Cada fila es".
|
||||
assert gran.text.startswith("Cada fila es")
|
||||
assert "PassengerId" in gran.text
|
||||
assert "…" not in gran.text # the old ellipsis placeholder is gone.
|
||||
|
||||
|
||||
def test_fallback_sin_llm_sin_keys_usa_forma():
|
||||
ch = build_portada(_profile(with_llm=False, with_keys=False), {})
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
assert gran.text.startswith("Cada fila es")
|
||||
assert "titanic" in gran.text.lower()
|
||||
assert "pendiente" not in gran.text.lower()
|
||||
|
||||
|
||||
def test_ctx_explicito_gana_sobre_llm():
|
||||
ctx = {"description": "Descripción manual.",
|
||||
"granularity": "Cada fila es una unidad manual."}
|
||||
ch = build_portada(_profile(), ctx)
|
||||
desc = _markdown_after(ch.blocks, "Descripción")
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
assert desc.text == "Descripción manual."
|
||||
assert gran.text == "Cada fila es una unidad manual."
|
||||
|
||||
|
||||
def test_edge_perfil_vacio_no_lanza():
|
||||
# Empty / None never raise; the cover still shows a size and real texts.
|
||||
for prof, ctx in (({}, {}), (None, None)):
|
||||
ch = build_portada(prof, ctx)
|
||||
assert ch is not None
|
||||
group = next(b for b in ch.blocks if isinstance(b, Group))
|
||||
size_h = next(b for b in group.blocks
|
||||
if isinstance(b, Heading) and b.level == 2)
|
||||
assert "filas" in size_h.text and "columnas" in size_h.text
|
||||
desc = _markdown_after(ch.blocks, "Descripción")
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
assert desc.text and "pendiente" not in desc.text.lower()
|
||||
assert gran.text.startswith("Cada fila es")
|
||||
|
||||
|
||||
def test_golden_render_pdf_muestra_portada():
|
||||
prof = _profile()
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pdf")
|
||||
res = render_automatic_eda_pdf(prof, out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
txt = _pdf_text(out)
|
||||
assert "titanic" in txt.lower()
|
||||
assert "891" in txt and "filas" in txt and "columnas" in txt
|
||||
assert "Titanic" in txt # LLM summary in the Description.
|
||||
assert "Cada fila es" in txt # granularity sentence.
|
||||
|
||||
|
||||
def test_golden_render_pptx_muestra_portada():
|
||||
prof = _profile()
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pptx")
|
||||
res = render_automatic_eda_pptx(prof, out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
txt = _pptx_text(out)
|
||||
assert "titanic" in txt.lower()
|
||||
assert "891" in txt and "columnas" in txt
|
||||
assert "Cada fila es" in txt
|
||||
@@ -0,0 +1,499 @@
|
||||
"""Key-relations chapter (RELACIONES) — the keys / join structure of the data.
|
||||
|
||||
This chapter is the *relational* section of an AutomaticEDA report. It answers a
|
||||
single question for the table (or the whole DuckDB source it lives in): **how do
|
||||
the keys relate?** It composes, without reimplementing them, the registry's
|
||||
relation primitives and degrades honestly when a layer does not apply.
|
||||
|
||||
It renders, in order, only the layers that have something to say:
|
||||
|
||||
1. **Declared keys** (real schema constraints) — when the DuckDB source declares
|
||||
PRIMARY KEY / FOREIGN KEY / UNIQUE constraints, they are read verbatim via
|
||||
``detect_declared_keys_duckdb`` and shown as ground truth: which column is the
|
||||
PK, which columns are FKs and the table/column they point to.
|
||||
2. **Primary-key candidates** — the ``key_candidates`` the TableProfile already
|
||||
carries (columns whose cardinality equals the row count, with no nulls). These
|
||||
are *candidates*: a column that could serve as the row identifier.
|
||||
3. **Foreign-key candidates** when none are declared:
|
||||
- **Inter-table** (the DuckDB source has several tables): real FK candidates by
|
||||
name signal + value containment via ``infer_fk_containment_duckdb``, plus the
|
||||
join graph (roles + a pasteable Mermaid diagram) via ``build_join_graph``.
|
||||
- **Intra-table** (a single table): columns that *look* like a foreign key by a
|
||||
name+cardinality heuristic (``suggest_intratable_fk_candidates``). This is a
|
||||
**suggestion**, explicitly flagged as a heuristic, never an assertion.
|
||||
|
||||
``build_relaciones(profile, ctx) -> Chapter | None``: returns ``None`` when there
|
||||
is nothing to say (no declared key, no key candidates, and no FK candidate —
|
||||
inter- or intra-table). Reads everything defensively (``.get``) and never raises:
|
||||
anything missing degrades to a note or is omitted; a failing registry call drops
|
||||
its layer instead of aborting the chapter.
|
||||
|
||||
ctx keys this chapter consumes (all optional):
|
||||
db_path, table : str — the DuckDB file and table being profiled (set by
|
||||
``build_eda_render_ctx``). ``db_path`` is needed to read declared
|
||||
constraints, to list the sibling tables, and to run the containment-based
|
||||
FK inference. Without it, only the profile-derived layers (PK candidates,
|
||||
intra-table FK heuristic) are available.
|
||||
glossary : model.GlossaryCollector — shared glossary; the chapter registers
|
||||
the relational terms (PK, FK, containment, cardinality) and marks their
|
||||
first appearance clickable.
|
||||
|
||||
Contract: build_<id>(profile, ctx) -> Chapter | None ; CHAPTER_VERSION = "x.y.z".
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
from .. import model
|
||||
|
||||
# Pure/impure registry functions (group ``eda``) this chapter composes. Imported
|
||||
# defensively (module-leaf imports, like the AGREGACION chapter) so the chapter
|
||||
# still builds — degrading the affected layer to nothing — if a function is
|
||||
# somehow unavailable / not indexed yet.
|
||||
try:
|
||||
from datascience.detect_declared_keys_duckdb import detect_declared_keys_duckdb
|
||||
except Exception: # noqa: BLE001 — keep the chapter importable no matter what.
|
||||
detect_declared_keys_duckdb = None # type: ignore[assignment]
|
||||
try:
|
||||
from datascience.infer_fk_containment_duckdb import infer_fk_containment_duckdb
|
||||
except Exception: # noqa: BLE001
|
||||
infer_fk_containment_duckdb = None # type: ignore[assignment]
|
||||
try:
|
||||
from datascience.build_join_graph import build_join_graph
|
||||
except Exception: # noqa: BLE001
|
||||
build_join_graph = None # type: ignore[assignment]
|
||||
try:
|
||||
from datascience.suggest_intratable_fk_candidates import (
|
||||
suggest_intratable_fk_candidates,
|
||||
)
|
||||
except Exception: # noqa: BLE001
|
||||
suggest_intratable_fk_candidates = None # type: ignore[assignment]
|
||||
try:
|
||||
from infra import duckdb_list_tables
|
||||
except Exception: # noqa: BLE001
|
||||
duckdb_list_tables = None # type: ignore[assignment]
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
CHAPTER_ID = "relaciones"
|
||||
CHAPTER_TITLE = "Relaciones de clave"
|
||||
|
||||
# Cap the inter-table FK table so a wide schema does not blow up the page; the
|
||||
# rest is summarized in a closing note (no silent truncation).
|
||||
MAX_FK_ROWS = 40
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Glossary terms this chapter explains. Registered in the shared collector and
|
||||
# marked clickable on their first appearance (contract §11.1).
|
||||
# --------------------------------------------------------------------------- #
|
||||
_TERMS = {
|
||||
"pk": (
|
||||
"Clave primaria (PK)",
|
||||
"Columna (o conjunto de columnas) que identifica de forma única cada fila "
|
||||
"de una tabla: sus valores no se repiten y no son nulos. Una tabla tiene "
|
||||
"como mucho una clave primaria; es el ancla por la que otras tablas la "
|
||||
"referencian.",
|
||||
),
|
||||
"fk": (
|
||||
"Clave foránea (FK)",
|
||||
"Columna de una tabla cuyos valores apuntan a la clave primaria de otra "
|
||||
"tabla (o de la misma), creando una relación entre ambas. Una FK suele ser "
|
||||
"N:1: muchas filas de la tabla origen comparten el mismo valor de la tabla "
|
||||
"destino.",
|
||||
),
|
||||
"containment": (
|
||||
"Containment / inclusión",
|
||||
"Señal con la que se infiere una clave foránea sin que la base la declare: "
|
||||
"la fracción de valores distintos de una columna A que también aparecen "
|
||||
"como valores de otra columna B. Si casi todos los valores de A están "
|
||||
"contenidos en B (inclusión ≈ 1) y B parece una clave, A → B es una FK "
|
||||
"candidata.",
|
||||
),
|
||||
"cardinalidad": (
|
||||
"Cardinalidad",
|
||||
"Número de valores distintos de una columna. Cardinalidad igual al número "
|
||||
"de filas (y sin nulos) señala un identificador (candidato a clave "
|
||||
"primaria); cardinalidad alta pero menor que el número de filas, con "
|
||||
"valores repetidos, es típica de una clave foránea.",
|
||||
),
|
||||
}
|
||||
|
||||
|
||||
def _register_terms(ctx: dict) -> bool:
|
||||
"""Register the relational terms in the shared glossary. Returns whether the
|
||||
in-text appearances should be marked clickable."""
|
||||
glossary = ctx.get("glossary")
|
||||
if not isinstance(glossary, model.GlossaryCollector):
|
||||
return False
|
||||
for key, (label, definition) in _TERMS.items():
|
||||
glossary.add(key, label, definition)
|
||||
return True
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Formatting helpers (mirror the other chapters' defensive style).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _fmt_int(value) -> str:
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
return f"{int(value):,}".replace(",", ".")
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
|
||||
|
||||
def _fmt_pct_fraction(value, decimals: int = 1) -> str:
|
||||
"""Format a 0–1 fraction as a percentage. None -> placeholder."""
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
v = float(value)
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
if v <= 1.0:
|
||||
v *= 100.0
|
||||
return f"{v:.{decimals}f}%"
|
||||
|
||||
|
||||
def _fmt_ratio(value, decimals: int = 3) -> str:
|
||||
"""Format an already-0–1 ratio (inclusion) as a plain number."""
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
return f"{float(value):.{decimals}f}".rstrip("0").rstrip(".")
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
|
||||
|
||||
def _is_dict(v) -> bool:
|
||||
return isinstance(v, dict)
|
||||
|
||||
|
||||
def _columns_by_name(profile: dict) -> dict:
|
||||
"""Index the profile columns by name for quick metric lookup."""
|
||||
out = {}
|
||||
for col in (profile.get("columns") or []):
|
||||
if _is_dict(col) and col.get("name") is not None:
|
||||
out[col.get("name")] = col
|
||||
return out
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Layer 1 — declared keys (real schema constraints).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _declared_keys(db_path: str, table: str):
|
||||
"""Read declared PK/FK/UNIQUE for the source, or None if unavailable."""
|
||||
if not db_path or detect_declared_keys_duckdb is None:
|
||||
return None
|
||||
try:
|
||||
out = detect_declared_keys_duckdb(db_path, table)
|
||||
except Exception: # noqa: BLE001 — dict-no-throw: treat as unavailable.
|
||||
return None
|
||||
if not _is_dict(out) or out.get("status") != "ok":
|
||||
return None
|
||||
return out
|
||||
|
||||
|
||||
def _declared_section(declared: dict) -> list:
|
||||
"""Blocks for the declared-keys layer, or [] if there is nothing declared."""
|
||||
pks = [p for p in (declared.get("primary_keys") or []) if _is_dict(p)]
|
||||
fks = [f for f in (declared.get("foreign_keys") or []) if _is_dict(f)]
|
||||
uqs = [u for u in (declared.get("unique") or []) if _is_dict(u)]
|
||||
if not (pks or fks or uqs):
|
||||
return []
|
||||
|
||||
blocks = [
|
||||
model.Heading(text="Claves declaradas en el esquema", level=2),
|
||||
model.Markdown(text=(
|
||||
"La base **declara** estas relaciones de clave como restricciones "
|
||||
"reales del esquema (constraints). Son la verdad de referencia: no se "
|
||||
"infieren, se leen tal cual de la definición de las tablas.")),
|
||||
]
|
||||
|
||||
if pks:
|
||||
rows = [[model._safe_str(p.get("table")),
|
||||
", ".join(model._safe_str(c) for c in (p.get("columns") or []))]
|
||||
for p in pks]
|
||||
blocks.append(model.DataTable(
|
||||
header=["Tabla", "Columna(s) PK"], rows=rows,
|
||||
title="Claves primarias declaradas",
|
||||
note="Cada fila: la clave primaria declarada de una tabla."))
|
||||
|
||||
if fks:
|
||||
rows = []
|
||||
for f in fks:
|
||||
src = ", ".join(model._safe_str(c) for c in (f.get("columns") or []))
|
||||
dst = ", ".join(
|
||||
model._safe_str(c) for c in (f.get("referenced_columns") or []))
|
||||
rows.append([
|
||||
model._safe_str(f.get("table")), src,
|
||||
model._safe_str(f.get("referenced_table")), dst])
|
||||
blocks.append(model.DataTable(
|
||||
header=["Tabla origen", "Columna(s) FK", "→ Tabla destino",
|
||||
"Columna(s) destino"],
|
||||
rows=rows, title="Claves foráneas declaradas",
|
||||
note="Cada fila: una FK declarada — origen → destino."))
|
||||
|
||||
if uqs:
|
||||
rows = [[model._safe_str(u.get("table")),
|
||||
", ".join(model._safe_str(c) for c in (u.get("columns") or []))]
|
||||
for u in uqs]
|
||||
blocks.append(model.DataTable(
|
||||
header=["Tabla", "Columna(s) UNIQUE"], rows=rows,
|
||||
title="Restricciones UNIQUE declaradas"))
|
||||
|
||||
return blocks
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Layer 2 — primary-key candidates (from the profile).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _pk_candidates_section(profile: dict, mark: bool) -> list:
|
||||
"""Blocks for the PK-candidates layer, or [] if there are none."""
|
||||
keys = [k for k in (profile.get("key_candidates") or []) if k is not None]
|
||||
if not keys:
|
||||
return []
|
||||
by_name = _columns_by_name(profile)
|
||||
|
||||
pk = ("[[term:pk]]**clave primaria**[[/term]]" if mark
|
||||
else "**clave primaria**")
|
||||
intro = (
|
||||
f"Columnas **candidatas a {pk}**: su "
|
||||
"[[term:cardinalidad]]cardinalidad[[/term]] iguala al número de filas y "
|
||||
"no tienen nulos. Son candidatas, no una clave declarada: la base no "
|
||||
"las marca como tal."
|
||||
if mark else
|
||||
"Columnas **candidatas a clave primaria**: su cardinalidad iguala al "
|
||||
"número de filas y no tienen nulos. Son candidatas, no una clave "
|
||||
"declarada.")
|
||||
|
||||
rows = []
|
||||
for name in keys:
|
||||
col = by_name.get(name) or {}
|
||||
rows.append([
|
||||
model._safe_str(name),
|
||||
_fmt_int(col.get("distinct_count")),
|
||||
_fmt_pct_fraction(col.get("unique_pct")),
|
||||
model._safe_str(col.get("inferred_type") or col.get("physical_type") or "—"),
|
||||
])
|
||||
return [
|
||||
model.Heading(text="Candidatos a clave primaria", level=2),
|
||||
model.Markdown(text=intro),
|
||||
model.DataTable(
|
||||
header=["Columna", "Valores distintos", "% único", "Tipo"],
|
||||
rows=rows, title="Candidatas a clave primaria",
|
||||
note=f"{_fmt_int(profile.get('n_rows'))} filas en total como referencia."),
|
||||
]
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Layer 3a — inter-table FK candidates (containment) + join graph.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _list_source_tables(db_path: str) -> list:
|
||||
"""List the tables in the DuckDB source, or [] if it can't be listed."""
|
||||
if not db_path or duckdb_list_tables is None:
|
||||
return []
|
||||
try:
|
||||
out = duckdb_list_tables(db_path)
|
||||
except Exception: # noqa: BLE001
|
||||
return []
|
||||
if not _is_dict(out) or out.get("status") != "ok":
|
||||
return []
|
||||
return [t for t in (out.get("tables") or []) if isinstance(t, str)]
|
||||
|
||||
|
||||
def _inter_table_section(db_path: str, tables: list, mark: bool) -> list:
|
||||
"""Blocks for the inter-table FK layer (containment + join graph), or []."""
|
||||
if infer_fk_containment_duckdb is None or len(tables) < 2:
|
||||
return []
|
||||
try:
|
||||
fk = infer_fk_containment_duckdb(db_path, tables=tables)
|
||||
except Exception: # noqa: BLE001
|
||||
return []
|
||||
if not _is_dict(fk) or fk.get("status") != "ok":
|
||||
return []
|
||||
candidates = [c for c in (fk.get("fk_candidates") or []) if _is_dict(c)]
|
||||
if not candidates:
|
||||
return []
|
||||
|
||||
containment = ("[[term:containment]]containment (inclusión de valores)[[/term]]"
|
||||
if mark else "containment (inclusión de valores)")
|
||||
fk_term = "[[term:fk]]**claves foráneas**[[/term]]" if mark else "**claves foráneas**"
|
||||
blocks = [
|
||||
model.Heading(text="Claves foráneas candidatas (inter-tabla)", level=2),
|
||||
model.Markdown(text=(
|
||||
f"La fuente tiene varias tablas. Estas {fk_term} candidatas se "
|
||||
f"infieren por señal de nombre y por {containment}. No están "
|
||||
"declaradas por la base; son la relación más probable según los "
|
||||
"datos.")),
|
||||
]
|
||||
|
||||
shown = candidates[:MAX_FK_ROWS]
|
||||
rows = []
|
||||
for c in shown:
|
||||
rows.append([
|
||||
f"{model._safe_str(c.get('from_table'))}.{model._safe_str(c.get('from_col'))}",
|
||||
f"{model._safe_str(c.get('to_table'))}.{model._safe_str(c.get('to_col'))}",
|
||||
_fmt_ratio(c.get("inclusion")),
|
||||
model._safe_str(c.get("cardinality") or "—"),
|
||||
"sí" if c.get("name_match") else "no",
|
||||
])
|
||||
note = "Ordenadas por señal de nombre e inclusión."
|
||||
if len(candidates) > len(shown):
|
||||
note += f" Se muestran {len(shown)} de {len(candidates)} candidatas."
|
||||
blocks.append(model.DataTable(
|
||||
header=["Origen", "→ Destino", "Inclusión", "Cardinalidad", "Coincide nombre"],
|
||||
rows=rows, title="FK candidatas por containment", note=note))
|
||||
|
||||
# Join graph: node roles + a pasteable Mermaid diagram, kept together.
|
||||
if build_join_graph is not None:
|
||||
try:
|
||||
graph = build_join_graph(candidates, tables=tables)
|
||||
except Exception: # noqa: BLE001
|
||||
graph = None
|
||||
if _is_dict(graph):
|
||||
graph_blocks = [model.Heading(text="Grafo de relaciones", level=3)]
|
||||
nodes = [n for n in (graph.get("nodes") or []) if _is_dict(n)]
|
||||
if nodes:
|
||||
node_rows = [[
|
||||
model._safe_str(n.get("table")),
|
||||
model._safe_str(n.get("role") or "—"),
|
||||
_fmt_int(n.get("out_degree")),
|
||||
_fmt_int(n.get("in_degree")),
|
||||
] for n in nodes]
|
||||
graph_blocks.append(model.DataTable(
|
||||
header=["Tabla", "Rol", "FK salientes", "FK entrantes"],
|
||||
rows=node_rows, title="Tablas y su rol en el grafo",
|
||||
note="Rol: fact (apunta a otras), dimension (referenciada), "
|
||||
"bridge (ambas), standalone (aislada)."))
|
||||
hubs = [h for h in (graph.get("hubs") or []) if h]
|
||||
if hubs:
|
||||
graph_blocks.append(model.Markdown(text=(
|
||||
"Tablas con más relaciones salientes (candidatas a tabla de "
|
||||
"hechos): " + ", ".join(model._safe_str(h) for h in hubs) + ".")))
|
||||
mermaid = model._safe_str(graph.get("mermaid")).strip()
|
||||
if mermaid:
|
||||
graph_blocks.append(model.Markdown(text=(
|
||||
"Diagrama de las relaciones (pegable en un bloque Mermaid):")))
|
||||
graph_blocks.append(model.Markdown(
|
||||
text="```mermaid\n" + mermaid + "\n```"))
|
||||
if len(graph_blocks) > 1:
|
||||
blocks.append(model.Group(blocks=graph_blocks,
|
||||
title="Grafo de relaciones"))
|
||||
|
||||
skipped = [s for s in (fk.get("skipped") or []) if s]
|
||||
if skipped:
|
||||
blocks.append(model.Note(
|
||||
"Algunos pares se omitieron por tamaño: "
|
||||
+ "; ".join(model._safe_str(s) for s in skipped) + "."))
|
||||
return blocks
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Layer 3b — intra-table FK candidates (name+cardinality heuristic).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _intra_table_section(profile: dict, mark: bool) -> list:
|
||||
"""Blocks for the intra-table FK heuristic layer, or [] if no candidates."""
|
||||
if suggest_intratable_fk_candidates is None:
|
||||
return []
|
||||
try:
|
||||
cands = suggest_intratable_fk_candidates(profile)
|
||||
except Exception: # noqa: BLE001
|
||||
return []
|
||||
cands = [c for c in (cands or []) if _is_dict(c)]
|
||||
if not cands:
|
||||
return []
|
||||
|
||||
fk_term = "[[term:fk]]**claves foráneas**[[/term]]" if mark else "**claves foráneas**"
|
||||
blocks = [
|
||||
model.Heading(text="Posibles claves foráneas (heurística de nombre)", level=2),
|
||||
model.Markdown(text=(
|
||||
f"No hay otras tablas que referenciar, pero algunas columnas **parecen** "
|
||||
f"{fk_term} por su nombre (terminan en «id») y su cardinalidad (muchos "
|
||||
"valores repetidos, N:1). Es una **sugerencia heurística**, no una "
|
||||
"afirmación: el nombre de la tabla destino es una conjetura y no se "
|
||||
"comprueba inclusión de valores contra ninguna tabla real.")),
|
||||
]
|
||||
rows = []
|
||||
for c in cands:
|
||||
rows.append([
|
||||
model._safe_str(c.get("column")),
|
||||
model._safe_str(c.get("ref_table_guess") or "—"),
|
||||
_fmt_int(c.get("distinct_count")),
|
||||
_fmt_pct_fraction(c.get("unique_pct")),
|
||||
model._safe_str(c.get("inferred_type") or c.get("physical_type") or "—"),
|
||||
model._safe_str(c.get("reason") or ""),
|
||||
])
|
||||
blocks.append(model.DataTable(
|
||||
header=["Columna", "Posible tabla", "Valores distintos", "% único",
|
||||
"Tipo", "Motivo"],
|
||||
rows=rows, title="Posibles FK por nombre y cardinalidad",
|
||||
note="Heurística: posibles falsos positivos/negativos. No confirma containment."))
|
||||
blocks.append(model.Note(
|
||||
"Estas sugerencias se basan solo en el nombre y la cardinalidad. Para "
|
||||
"confirmarlas haría falta la tabla destino y comprobar la inclusión de "
|
||||
"valores (containment)."))
|
||||
return blocks
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Entry point.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _intro_blocks(mark: bool) -> list:
|
||||
pk = "[[term:pk]]clave primaria[[/term]]" if mark else "clave primaria"
|
||||
fk = "[[term:fk]]clave foránea[[/term]]" if mark else "clave foránea"
|
||||
text = (
|
||||
f"Este capítulo analiza las **relaciones de clave** de la tabla: cuál es "
|
||||
f"la {pk} y cuáles son las {fk}. Cuando la base las **declara** como "
|
||||
"restricciones del esquema, se muestran tal cual; cuando no, se proponen "
|
||||
"las más probables a partir de los datos —por containment entre tablas o, "
|
||||
"en una sola tabla, por una heurística de nombre y cardinalidad— siempre "
|
||||
"marcadas como candidatas, nunca como hechos.")
|
||||
return [model.Heading(text=CHAPTER_TITLE, level=1), model.Markdown(text=text)]
|
||||
|
||||
|
||||
def build_relaciones(profile: dict, ctx: dict):
|
||||
"""Build the RELACIONES Chapter, or None if there is nothing to say.
|
||||
|
||||
Args:
|
||||
profile: the ``eda`` group TableProfile dict (may be None/empty).
|
||||
ctx: presentation context. Consumes ``db_path`` + ``table`` (to read
|
||||
declared constraints, list sibling tables and run the containment FK
|
||||
inference) and ``glossary`` (to register the relational terms).
|
||||
|
||||
Returns:
|
||||
A ``model.Chapter`` with the applicable relation layers; or ``None`` when
|
||||
the dataset has no declared key, no key candidates and no FK candidate
|
||||
(neither inter- nor intra-table).
|
||||
"""
|
||||
if not isinstance(profile, dict):
|
||||
profile = {}
|
||||
ctx = ctx if isinstance(ctx, dict) else {}
|
||||
db_path = ctx.get("db_path")
|
||||
table = ctx.get("table")
|
||||
|
||||
mark = _register_terms(ctx)
|
||||
|
||||
# Build each layer; the chapter is the concatenation of the non-empty ones.
|
||||
declared = _declared_keys(db_path, table)
|
||||
declared_blocks = _declared_section(declared) if declared else []
|
||||
declared_has_fk = bool(declared and declared.get("foreign_keys"))
|
||||
|
||||
pk_blocks = _pk_candidates_section(profile, mark)
|
||||
|
||||
tables = _list_source_tables(db_path)
|
||||
inter_blocks = _inter_table_section(db_path, tables, mark)
|
||||
|
||||
# The intra-table heuristic only makes sense when no real FK is available for
|
||||
# this table — neither declared nor inferred inter-table. Otherwise the real
|
||||
# relations already answer the question and the heuristic is just noise.
|
||||
if declared_has_fk or inter_blocks:
|
||||
intra_blocks = []
|
||||
else:
|
||||
intra_blocks = _intra_table_section(profile, mark)
|
||||
|
||||
body = declared_blocks + pk_blocks + inter_blocks + intra_blocks
|
||||
if not body:
|
||||
return None # chapter does not apply: nothing to say about relations.
|
||||
|
||||
blocks = _intro_blocks(mark) + body
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
@@ -0,0 +1,273 @@
|
||||
"""Tests for the RELACIONES chapter — DoD: golden(s) + edges + no-cut render.
|
||||
|
||||
Two goldens covering the two real paths of the chapter:
|
||||
|
||||
- **Intra-table** (a single table, no db source for relations): the chapter shows
|
||||
the primary-key candidates from the profile and the heuristic foreign-key
|
||||
suggestions (name + cardinality), explicitly flagged as a heuristic. Renders to
|
||||
PDF and PPTX with nothing cut.
|
||||
- **Inter-table** (a real DuckDB file with two related tables, customers/orders,
|
||||
with a declared FK): the chapter shows the declared keys, the containment-based
|
||||
FK candidates and the join graph (roles + a pasteable Mermaid diagram).
|
||||
|
||||
Edges: a profile with no key candidate and no FK-looking column returns None;
|
||||
``None`` / ``{}`` profiles do not raise. The chapter registers its glossary terms.
|
||||
|
||||
Layers that depend on the sibling registry functions delegated alongside this
|
||||
chapter (``detect_declared_keys_duckdb``, ``suggest_intratable_fk_candidates``)
|
||||
are asserted **conditionally on the function being importable**, so the chapter's
|
||||
honest-degradation contract is what is tested, never a hard dependency on import
|
||||
timing.
|
||||
"""
|
||||
|
||||
import os
|
||||
import tempfile
|
||||
|
||||
import duckdb
|
||||
from pptx import Presentation
|
||||
from pypdf import PdfReader
|
||||
|
||||
from datascience.automatic_eda.chapters.relaciones import build_relaciones
|
||||
from datascience.automatic_eda.model import Chapter, Group, GlossaryCollector
|
||||
from datascience.render_automatic_eda_pdf import render_automatic_eda_pdf
|
||||
from datascience.render_automatic_eda_pptx import render_automatic_eda_pptx
|
||||
|
||||
# The optional sibling functions: their layers are asserted only when present.
|
||||
try:
|
||||
from datascience.detect_declared_keys_duckdb import detect_declared_keys_duckdb
|
||||
except Exception: # noqa: BLE001
|
||||
detect_declared_keys_duckdb = None
|
||||
try:
|
||||
from datascience.suggest_intratable_fk_candidates import (
|
||||
suggest_intratable_fk_candidates,
|
||||
)
|
||||
except Exception: # noqa: BLE001
|
||||
suggest_intratable_fk_candidates = None
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Helpers.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _flatten(blocks) -> list:
|
||||
"""Flatten Group blocks so a test can inspect every leaf block."""
|
||||
out = []
|
||||
for b in blocks:
|
||||
if isinstance(b, Group):
|
||||
out.extend(_flatten(b.blocks))
|
||||
else:
|
||||
out.append(b)
|
||||
return out
|
||||
|
||||
|
||||
def _text_of(chapter: Chapter) -> str:
|
||||
"""Collect all visible text of a chapter's blocks into one string."""
|
||||
parts = []
|
||||
for b in _flatten(chapter.blocks):
|
||||
for attr in ("text", "title", "note"):
|
||||
v = getattr(b, attr, None)
|
||||
if isinstance(v, str):
|
||||
parts.append(v)
|
||||
header = getattr(b, "header", None)
|
||||
if isinstance(header, list):
|
||||
parts.extend(str(c) for c in header)
|
||||
rows = getattr(b, "rows", None)
|
||||
if isinstance(rows, list):
|
||||
for r in rows:
|
||||
if isinstance(r, (list, tuple)):
|
||||
parts.extend(str(c) for c in r)
|
||||
else:
|
||||
parts.append(str(r))
|
||||
return "\n".join(parts)
|
||||
|
||||
|
||||
def _render_both(chapter: Chapter, tag: str):
|
||||
"""Render the chapter to PDF and PPTX; return (pdf_text, n_slides)."""
|
||||
tmp = tempfile.mkdtemp(prefix=f"relaciones_{tag}_")
|
||||
pdf_path = os.path.join(tmp, "out.pdf")
|
||||
pptx_path = os.path.join(tmp, "out.pptx")
|
||||
meta = {"title": f"EDA — {tag}"}
|
||||
render_automatic_eda_pdf([chapter], pdf_path, meta)
|
||||
render_automatic_eda_pptx([chapter], pptx_path, meta)
|
||||
assert os.path.exists(pdf_path) and os.path.getsize(pdf_path) > 0
|
||||
assert os.path.exists(pptx_path) and os.path.getsize(pptx_path) > 0
|
||||
text = "".join(p.extract_text() or "" for p in PdfReader(pdf_path).pages)
|
||||
n_slides = len(Presentation(pptx_path).slides)
|
||||
return text, n_slides
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Fixtures.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _titanic_profile() -> dict:
|
||||
"""A single-table profile: a PK candidate + a column that looks like a FK."""
|
||||
return {
|
||||
"table": "titanic",
|
||||
"source": "/data/titanic.csv",
|
||||
"n_rows": 891,
|
||||
"n_cols": 4,
|
||||
"key_candidates": ["PassengerId"],
|
||||
"columns": [
|
||||
{"name": "PassengerId", "inferred_type": "numeric",
|
||||
"physical_type": "BIGINT", "distinct_count": 891,
|
||||
"unique_pct": 1.0, "flags": ["possible_id"]},
|
||||
{"name": "ticket_id", "inferred_type": "numeric",
|
||||
"physical_type": "BIGINT", "distinct_count": 681,
|
||||
"unique_pct": 0.76, "flags": []},
|
||||
{"name": "fare", "inferred_type": "numeric",
|
||||
"physical_type": "DOUBLE", "distinct_count": 248,
|
||||
"unique_pct": 0.28, "flags": []},
|
||||
{"name": "sex", "inferred_type": "categorical",
|
||||
"physical_type": "VARCHAR", "distinct_count": 2,
|
||||
"unique_pct": 0.002, "flags": []},
|
||||
],
|
||||
}
|
||||
|
||||
|
||||
def _make_relational_db(path: str) -> None:
|
||||
"""Create a small DuckDB with customers(id) <- orders(customer_id), real FK."""
|
||||
con = duckdb.connect(path)
|
||||
con.execute("CREATE TABLE customers(id INTEGER PRIMARY KEY, name TEXT)")
|
||||
con.execute(
|
||||
"CREATE TABLE orders(id INTEGER PRIMARY KEY, "
|
||||
"customer_id INTEGER REFERENCES customers(id), amount DOUBLE)")
|
||||
con.execute("INSERT INTO customers VALUES "
|
||||
"(1,'a'),(2,'b'),(3,'c'),(4,'d'),(5,'e')")
|
||||
con.execute("INSERT INTO orders VALUES "
|
||||
"(1,1,10.0),(2,1,20.0),(3,2,30.0),(4,3,40.0),"
|
||||
"(5,3,50.0),(6,4,60.0),(7,5,70.0),(8,2,80.0)")
|
||||
con.close()
|
||||
|
||||
|
||||
def _orders_profile() -> dict:
|
||||
"""A profile for the `orders` table of the relational DB."""
|
||||
return {
|
||||
"table": "orders",
|
||||
"source": "orders",
|
||||
"n_rows": 8,
|
||||
"n_cols": 3,
|
||||
"key_candidates": ["id"],
|
||||
"columns": [
|
||||
{"name": "id", "inferred_type": "numeric", "physical_type": "INTEGER",
|
||||
"distinct_count": 8, "unique_pct": 1.0, "flags": ["possible_id"]},
|
||||
{"name": "customer_id", "inferred_type": "numeric",
|
||||
"physical_type": "INTEGER", "distinct_count": 5, "unique_pct": 0.625,
|
||||
"flags": []},
|
||||
{"name": "amount", "inferred_type": "numeric", "physical_type": "DOUBLE",
|
||||
"distinct_count": 8, "unique_pct": 1.0, "flags": []},
|
||||
],
|
||||
}
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Golden 1 — intra-table.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_golden_intra_table_pk_and_fk_heuristic():
|
||||
"""Single table: PK candidate shown; FK heuristic shown (if fn available);
|
||||
renders to PDF + PPTX with nothing cut."""
|
||||
prof = _titanic_profile()
|
||||
glossary = GlossaryCollector()
|
||||
# No db_path: only the profile-derived layers apply (no declared, no inter).
|
||||
chapter = build_relaciones(prof, {"glossary": glossary})
|
||||
|
||||
assert isinstance(chapter, Chapter)
|
||||
assert chapter.id == "relaciones"
|
||||
text = _text_of(chapter)
|
||||
|
||||
# PK candidate is always present (comes from the profile).
|
||||
assert "Candidatos a clave primaria" in text
|
||||
assert "PassengerId" in text
|
||||
|
||||
# Glossary terms got registered.
|
||||
for key in ("pk", "fk", "cardinalidad"):
|
||||
assert glossary.has(key)
|
||||
|
||||
# FK heuristic layer: present iff the delegated function is importable.
|
||||
if suggest_intratable_fk_candidates is not None:
|
||||
assert "Posibles claves foráneas" in text
|
||||
assert "ticket_id" in text
|
||||
# The float measure and the PK itself are NOT suggested as FKs.
|
||||
assert "Posibles FK por nombre" in text
|
||||
|
||||
pdf_text, n_slides = _render_both(chapter, "intra")
|
||||
assert "PassengerId" in pdf_text
|
||||
assert n_slides >= 1
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Golden 2 — inter-table (real DuckDB).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_golden_inter_table_containment_and_join_graph():
|
||||
"""Two related tables: declared FK (if fn available) + containment FK
|
||||
candidate + Mermaid join graph."""
|
||||
tmp = tempfile.mkdtemp(prefix="relaciones_db_")
|
||||
db_path = os.path.join(tmp, "shop.duckdb")
|
||||
_make_relational_db(db_path)
|
||||
|
||||
prof = _orders_profile()
|
||||
glossary = GlossaryCollector()
|
||||
chapter = build_relaciones(
|
||||
prof, {"db_path": db_path, "table": "orders", "glossary": glossary})
|
||||
|
||||
assert isinstance(chapter, Chapter)
|
||||
text = _text_of(chapter)
|
||||
|
||||
# Inter-table containment FK candidate: customer_id -> customers.id. This path
|
||||
# uses infer_fk_containment_duckdb + build_join_graph, both already in the
|
||||
# registry, so it must be present.
|
||||
assert "Claves foráneas candidatas (inter-tabla)" in text
|
||||
assert "orders.customer_id" in text
|
||||
assert "customers.id" in text
|
||||
# Join graph with a pasteable Mermaid diagram.
|
||||
assert "Grafo de relaciones" in text
|
||||
assert "mermaid" in text
|
||||
assert "graph LR" in text
|
||||
assert "containment" in text.lower()
|
||||
|
||||
# Declared-keys layer: present iff the delegated function is importable.
|
||||
if detect_declared_keys_duckdb is not None:
|
||||
assert "Claves declaradas en el esquema" in text
|
||||
assert "Claves foráneas declaradas" in text
|
||||
|
||||
pdf_text, n_slides = _render_both(chapter, "inter")
|
||||
assert "customer_id" in pdf_text
|
||||
assert n_slides >= 1
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Edges.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_none_when_no_relations():
|
||||
"""No key candidates, no FK-looking columns, no db source -> None."""
|
||||
prof = {
|
||||
"table": "flat", "n_rows": 100, "n_cols": 2, "key_candidates": [],
|
||||
"columns": [
|
||||
{"name": "value", "inferred_type": "numeric", "physical_type": "DOUBLE",
|
||||
"distinct_count": 50, "unique_pct": 0.5, "flags": []},
|
||||
{"name": "label", "inferred_type": "categorical",
|
||||
"physical_type": "VARCHAR", "distinct_count": 3, "unique_pct": 0.03,
|
||||
"flags": []},
|
||||
],
|
||||
}
|
||||
assert build_relaciones(prof, {}) is None
|
||||
|
||||
|
||||
def test_empty_and_none_profile_do_not_raise():
|
||||
"""None / {} profile and missing ctx degrade to None without raising."""
|
||||
assert build_relaciones(None, None) is None
|
||||
assert build_relaciones({}, {}) is None
|
||||
assert build_relaciones({}, {"glossary": GlossaryCollector()}) is None
|
||||
|
||||
|
||||
def test_pk_candidate_only_builds_chapter():
|
||||
"""A profile with only a key candidate (no FK anything, no db) still builds:
|
||||
the relations chapter applies because there is a PK candidate to report."""
|
||||
prof = {
|
||||
"table": "t", "n_rows": 10, "n_cols": 1, "key_candidates": ["row_id"],
|
||||
"columns": [
|
||||
{"name": "row_id", "inferred_type": "numeric", "physical_type": "BIGINT",
|
||||
"distinct_count": 10, "unique_pct": 1.0, "flags": ["possible_id"]},
|
||||
],
|
||||
}
|
||||
chapter = build_relaciones(prof, {})
|
||||
assert isinstance(chapter, Chapter)
|
||||
assert "Candidatos a clave primaria" in _text_of(chapter)
|
||||
@@ -32,7 +32,9 @@ CHAPTER_ORDER = [
|
||||
"num_distr", # numeric distributions
|
||||
"cat_distr", # categorical distributions
|
||||
"calidad", # data quality
|
||||
"missingness", # missing-data patterns (co-occurrence of absences; MCAR/MAR)
|
||||
"correlacion", # correlations / associations
|
||||
"relaciones", # key relations: declared/candidate PK + FK (inter/intra-table)
|
||||
"modelos", # cheap models (PCA/KMeans/outliers)
|
||||
"timeseries", # time-series analysis
|
||||
"geospatial", # geospatial
|
||||
|
||||
@@ -139,10 +139,17 @@ class Group:
|
||||
it starts on a fresh page and flows (honest degradation, never cut). Use it to
|
||||
bind ``Heading`` + ``Markdown`` + ``Figure`` of one idea together (see the
|
||||
DISTR NUM / AGREGACION chapters).
|
||||
|
||||
When ``page_break_before`` is True the renderer additionally forces the group
|
||||
to *start* on a fresh page/slide (unless the current one is already empty), so
|
||||
a chapter can give each unit its own page — e.g. one categorical column per
|
||||
page (see CAT DISTR). It is purely additive: the default False keeps the plain
|
||||
keep-together behaviour for every existing chapter.
|
||||
"""
|
||||
|
||||
blocks: list = field(default_factory=list)
|
||||
title: Optional[str] = None
|
||||
page_break_before: bool = False
|
||||
kind: str = field(default="group", init=False)
|
||||
|
||||
|
||||
@@ -228,7 +235,9 @@ def as_block(obj: Any):
|
||||
return Note(text=_safe_str(obj.get("text")))
|
||||
if cls is Group:
|
||||
return Group(blocks=as_blocks(obj.get("blocks")),
|
||||
title=obj.get("title"))
|
||||
title=obj.get("title"),
|
||||
page_break_before=bool(
|
||||
obj.get("page_break_before", False)))
|
||||
if cls is GlossaryEntry:
|
||||
return GlossaryEntry(key=_safe_str(obj.get("key")),
|
||||
label=_safe_str(obj.get("label")),
|
||||
|
||||
@@ -0,0 +1,458 @@
|
||||
"""AutomaticEDA Markdown serializer — one self-contained file to paste to an LLM.
|
||||
|
||||
Same document model as the PDF/PPTX renderers (an ordered list of
|
||||
:class:`Chapter`, each a list of format-independent blocks) but emitted as plain
|
||||
**Markdown** instead of a binary. The goal is different from the other two
|
||||
renderers: a Markdown EDA is meant to be *pasted into an LLM*, so it prioritises
|
||||
TEXT and DATA over visuals. Tables become Markdown tables (every row dumped, no
|
||||
pagination — nothing is cut because there are no pages); a ``Figure`` becomes its
|
||||
caption plus, when possible, the underlying bar/histogram data as a Markdown
|
||||
table (an LLM cannot see the image); glossary term markers are stripped while
|
||||
``**bold**`` is kept (it is valid Markdown).
|
||||
|
||||
dict-no-throw (the ``eda`` group style): :func:`render_md` never raises. On a
|
||||
fatal error it returns ``{path: None, ...}`` with a ``note`` explaining why; a
|
||||
malformed block degrades to a readable note rather than crashing the document.
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import os
|
||||
import re
|
||||
|
||||
from . import model
|
||||
|
||||
# Glossary span markers (kept text, dropped markers). We intentionally do NOT use
|
||||
# ``text_layout.strip_inline_md`` for Markdown blocks because that also removes
|
||||
# ``**bold**`` — valid Markdown we want to preserve when pasting to an LLM.
|
||||
_TERM_OPEN_RE = re.compile(r"\[\[term:[A-Za-z0-9_]+\]\]")
|
||||
_MAX_BAR_ROWS = 100
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Small helpers.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _clean_terms(s) -> str:
|
||||
"""Drop glossary term markers, keeping the visible text (and any **bold**)."""
|
||||
s = model._safe_str(s)
|
||||
s = _TERM_OPEN_RE.sub("", s)
|
||||
return s.replace("[[/term]]", "")
|
||||
|
||||
|
||||
def _cell(v) -> str:
|
||||
"""Render a value as a safe Markdown table cell.
|
||||
|
||||
Escapes pipes (``|`` -> ``\\|``) so they do not break the column layout and
|
||||
folds newlines to ``<br>`` so a multi-line value stays inside one cell. None
|
||||
becomes an empty string.
|
||||
"""
|
||||
s = model._safe_str(v)
|
||||
s = s.replace("|", "\\|")
|
||||
s = s.replace("\r\n", "\n").replace("\r", "\n").replace("\n", "<br>")
|
||||
return s
|
||||
|
||||
|
||||
def _slug(text: str) -> str:
|
||||
"""GitHub-style heading anchor: lowercase, spaces->'-', drop other symbols."""
|
||||
s = model._safe_str(text).strip().lower()
|
||||
out = []
|
||||
for ch in s:
|
||||
if ch.isalnum():
|
||||
out.append(ch)
|
||||
elif ch in " -":
|
||||
out.append("-")
|
||||
# any other symbol is dropped.
|
||||
slug = "".join(out)
|
||||
while "--" in slug:
|
||||
slug = slug.replace("--", "-")
|
||||
return slug.strip("-")
|
||||
|
||||
|
||||
def _fmt_num(v) -> str:
|
||||
"""Compact number for the figure data tables (ints as ints, else 4 sig figs)."""
|
||||
try:
|
||||
f = float(v)
|
||||
except Exception: # noqa: BLE001
|
||||
return model._safe_str(v)
|
||||
if f != f: # NaN
|
||||
return "NaN"
|
||||
if f == int(f) and abs(f) < 1e15:
|
||||
return str(int(f))
|
||||
return f"{f:.4g}"
|
||||
|
||||
|
||||
def _fmt_int(v) -> str:
|
||||
try:
|
||||
return str(int(v))
|
||||
except Exception: # noqa: BLE001
|
||||
return model._safe_str(v)
|
||||
|
||||
|
||||
def _now_iso() -> str:
|
||||
from datetime import datetime, timezone
|
||||
return datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S UTC")
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Document header (title + metadata blockquote + numbered index).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _meta_block(meta: dict) -> list:
|
||||
"""Build the metadata lines for the header blockquote (omitting absentees)."""
|
||||
ctx = meta.get("ctx") if isinstance(meta.get("ctx"), dict) else {}
|
||||
lines: list = []
|
||||
|
||||
def add(label, value) -> None:
|
||||
if value is None:
|
||||
return
|
||||
s = model._safe_str(value).strip()
|
||||
if s and s.lower() != "none":
|
||||
lines.append(f"**{label}:** {s}")
|
||||
|
||||
add("Dataset", ctx.get("dataset_name") or meta.get("dataset_name"))
|
||||
add("Fuente", ctx.get("source_origin") or meta.get("source_origin"))
|
||||
add("Almacenamiento", ctx.get("storage") or meta.get("storage"))
|
||||
n_rows = ctx.get("n_rows", meta.get("n_rows"))
|
||||
n_cols = ctx.get("n_cols", meta.get("n_cols"))
|
||||
if n_rows is not None and n_cols is not None:
|
||||
lines.append(
|
||||
f"**Dimensiones:** {_fmt_int(n_rows)} filas × {_fmt_int(n_cols)} columnas")
|
||||
add("Generado", meta.get("generated_at") or _now_iso())
|
||||
lines.append(f"**Motor:** {model.ENGINE_NAME} v{model.ENGINE_VERSION}")
|
||||
return lines
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Per-block serializers. Each returns a Markdown string (no surrounding blanks;
|
||||
# the caller separates blocks with a blank line).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _md_heading(block) -> str:
|
||||
level = int(getattr(block, "level", 1) or 1)
|
||||
hashes = "#" * min(level + 2, 6) # level1 -> ###; '#'/'##' reserved for doc/chapter.
|
||||
text = _clean_terms(getattr(block, "text", "")).strip()
|
||||
return f"{hashes} {text}"
|
||||
|
||||
|
||||
def _md_markdown(block) -> str:
|
||||
# Keep the text verbatim, dropping only glossary markers (keep **bold**).
|
||||
return _clean_terms(getattr(block, "text", "")).rstrip("\n")
|
||||
|
||||
|
||||
def _md_kv_table(block) -> str:
|
||||
lines: list = []
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
lines.append(f"**{_clean_terms(title).strip()}**")
|
||||
lines.append("")
|
||||
lines.append("| Campo | Valor |")
|
||||
lines.append("| --- | --- |")
|
||||
for row in (getattr(block, "rows", []) or []):
|
||||
try:
|
||||
label, value = row[0], row[1]
|
||||
except Exception: # noqa: BLE001
|
||||
label, value = row, ""
|
||||
lines.append(f"| {_cell(label)} | {_cell(value)} |")
|
||||
return "\n".join(lines)
|
||||
|
||||
|
||||
def _md_data_table(block) -> str:
|
||||
lines: list = []
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
lines.append(f"**{_clean_terms(title).strip()}**")
|
||||
lines.append("")
|
||||
header = list(getattr(block, "header", []) or [])
|
||||
rows = list(getattr(block, "rows", []) or [])
|
||||
if not header:
|
||||
ncol = max((len(r) for r in rows), default=1)
|
||||
header = [f"col{i + 1}" for i in range(ncol)]
|
||||
ncol = len(header)
|
||||
lines.append("| " + " | ".join(_cell(h) for h in header) + " |")
|
||||
lines.append("| " + " | ".join(["---"] * ncol) + " |")
|
||||
for r in rows: # dump every row — no pagination, nothing cut.
|
||||
cells = [_cell(r[c]) if c < len(r) else "" for c in range(ncol)]
|
||||
lines.append("| " + " | ".join(cells) + " |")
|
||||
note = getattr(block, "note", None)
|
||||
if note:
|
||||
lines.append("")
|
||||
lines.append(f"*{_clean_terms(note).strip()}*")
|
||||
return "\n".join(lines)
|
||||
|
||||
|
||||
def _bars_table(bars: list) -> str:
|
||||
"""Render extracted bar/histogram data as a Markdown table (Desde/Hasta/Frec)."""
|
||||
lines = ["| Desde | Hasta | Frecuencia |", "| --- | --- | --- |"]
|
||||
shown = bars[:_MAX_BAR_ROWS]
|
||||
for x0, x1, h in shown:
|
||||
lines.append(f"| {_fmt_num(x0)} | {_fmt_num(x1)} | {_fmt_num(h)} |")
|
||||
out = "\n".join(lines)
|
||||
extra = len(bars) - len(shown)
|
||||
if extra > 0:
|
||||
out += f"\n\n*… ({extra} filas más)*"
|
||||
return out
|
||||
|
||||
|
||||
def _extract_bars(fig) -> list:
|
||||
"""Collect (x_from, x_to, height) of the rectangular bars of a matplotlib fig.
|
||||
|
||||
Histogram / bar-chart bars are ``matplotlib.patches.Rectangle`` with positive
|
||||
width and height; spines, legends and zero-area artists are skipped. Never
|
||||
raises — returns ``[]`` on any problem.
|
||||
"""
|
||||
bars: list = []
|
||||
try:
|
||||
for ax in fig.get_axes():
|
||||
# Collect this axes' positive-area rectangles, then keep only the ones
|
||||
# that look like actual histogram/bar bins. Reference shapes that
|
||||
# matplotlib also stores in ``ax.patches`` — most notably the ``±1σ``
|
||||
# band drawn by ``axvspan`` (a single rectangle far wider than a bin)
|
||||
# and a lone Tukey boxplot box — would otherwise show up as fake
|
||||
# "bins". A histogram axes has several near-equal-width bars, so we
|
||||
# drop any rectangle whose width is more than twice the median width
|
||||
# of that axes' rectangles (the σ-band spans many bins; uniform bins
|
||||
# all sit at the median width and stay).
|
||||
ax_bars: list = []
|
||||
for patch in list(getattr(ax, "patches", []) or []):
|
||||
try:
|
||||
w = patch.get_width()
|
||||
h = patch.get_height()
|
||||
x = patch.get_x()
|
||||
except Exception: # noqa: BLE001 — not a Rectangle-like patch.
|
||||
continue
|
||||
if w and w > 0 and h and h > 0:
|
||||
ax_bars.append((x, x + w, h))
|
||||
if len(ax_bars) >= 3:
|
||||
widths = sorted(b[1] - b[0] for b in ax_bars)
|
||||
median_w = widths[len(widths) // 2]
|
||||
if median_w > 0:
|
||||
ax_bars = [b for b in ax_bars
|
||||
if (b[1] - b[0]) <= 2.0 * median_w]
|
||||
bars.extend(ax_bars)
|
||||
except Exception: # noqa: BLE001
|
||||
return []
|
||||
return bars
|
||||
|
||||
|
||||
def _md_figure(block, meta: dict, out_path: str, counter: list) -> str:
|
||||
"""Serialize a Figure prioritising TEXT + DATA (an LLM cannot see the image).
|
||||
|
||||
Emits the caption, then — if the matplotlib figure has bars — a Markdown table
|
||||
of the underlying (Desde, Hasta, Frecuencia) values. Optionally (when
|
||||
``meta['embed_figures']`` is True) also exports a PNG beside the .md and adds
|
||||
an image link; off by default so the Markdown stays self-contained.
|
||||
"""
|
||||
caption = model._safe_str(getattr(block, "caption", "")).strip()
|
||||
parts = [f"*Figura: {caption}*" if caption else "*Figura*"]
|
||||
fig = None
|
||||
try:
|
||||
import matplotlib
|
||||
matplotlib.use("Agg") # defensive: headless rasterization backend.
|
||||
fig = getattr(block, "fig", None)
|
||||
make = getattr(block, "make", None)
|
||||
if fig is None and callable(make):
|
||||
fig = make()
|
||||
if fig is not None:
|
||||
bars = _extract_bars(fig)
|
||||
if bars:
|
||||
parts.append(_bars_table(bars))
|
||||
if meta.get("embed_figures"):
|
||||
png = _embed_png(fig, out_path, counter)
|
||||
if png:
|
||||
parts.append(f"")
|
||||
except Exception: # noqa: BLE001 — a bad figure degrades to just its caption.
|
||||
pass
|
||||
finally:
|
||||
if fig is not None:
|
||||
try:
|
||||
import matplotlib.pyplot as plt
|
||||
plt.close(fig)
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
return "\n\n".join(parts)
|
||||
|
||||
|
||||
def _embed_png(fig, out_path: str, counter: list) -> str:
|
||||
"""Export the figure to ``<basename>_figN.png`` beside the .md; return its name."""
|
||||
try:
|
||||
counter[0] += 1
|
||||
base = os.path.splitext(os.path.basename(out_path))[0] or "figura"
|
||||
name = f"{base}_fig{counter[0]}.png"
|
||||
path = os.path.join(os.path.dirname(os.path.abspath(out_path)), name)
|
||||
fig.savefig(path, format="png", dpi=120, bbox_inches="tight")
|
||||
return name
|
||||
except Exception: # noqa: BLE001
|
||||
return ""
|
||||
|
||||
|
||||
def _md_image(block) -> str:
|
||||
path = model._safe_str(getattr(block, "path", ""))
|
||||
caption = model._safe_str(getattr(block, "caption", "")).strip()
|
||||
out = f""
|
||||
if caption:
|
||||
out += f"\n\n*{caption}*"
|
||||
return out
|
||||
|
||||
|
||||
def _md_caption(block) -> str:
|
||||
return f"*{_clean_terms(getattr(block, 'text', '')).strip()}*"
|
||||
|
||||
|
||||
def _md_note(block) -> str:
|
||||
text = _clean_terms(getattr(block, "text", "")).strip()
|
||||
lines = text.split("\n")
|
||||
return "\n".join((f"> {ln}" if ln.strip() else ">") for ln in lines)
|
||||
|
||||
|
||||
def _md_group(block, meta: dict, out_path: str, counter: list) -> str:
|
||||
parts: list = []
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
parts.append(f"### {_clean_terms(title).strip()}")
|
||||
for b in (getattr(block, "blocks", []) or []):
|
||||
try:
|
||||
seg = _serialize_block(b, meta, out_path, counter)
|
||||
except Exception: # noqa: BLE001
|
||||
seg = ""
|
||||
if seg:
|
||||
parts.append(seg)
|
||||
return "\n\n".join(parts)
|
||||
|
||||
|
||||
def _md_glossary_entry(block) -> str:
|
||||
label = (model._safe_str(getattr(block, "label", "")).strip()
|
||||
or model._safe_str(getattr(block, "key", "")).strip())
|
||||
definition = _clean_terms(getattr(block, "definition", "")).strip()
|
||||
out = f"### {label}"
|
||||
if definition:
|
||||
out += f"\n\n{definition}"
|
||||
return out
|
||||
|
||||
|
||||
def _serialize_block(block, meta: dict, out_path: str, counter: list) -> str:
|
||||
"""Dispatch a single block to its Markdown serializer. Unknown -> note."""
|
||||
kind = getattr(block, "kind", "")
|
||||
if kind == "heading":
|
||||
return _md_heading(block)
|
||||
if kind == "markdown":
|
||||
return _md_markdown(block)
|
||||
if kind == "kv_table":
|
||||
return _md_kv_table(block)
|
||||
if kind == "data_table":
|
||||
return _md_data_table(block)
|
||||
if kind == "figure":
|
||||
return _md_figure(block, meta, out_path, counter)
|
||||
if kind == "image":
|
||||
return _md_image(block)
|
||||
if kind == "caption":
|
||||
return _md_caption(block)
|
||||
if kind == "note":
|
||||
return _md_note(block)
|
||||
if kind == "group":
|
||||
return _md_group(block, meta, out_path, counter)
|
||||
if kind == "glossary_entry":
|
||||
return _md_glossary_entry(block)
|
||||
# Unknown content -> readable note (mirrors the model's defensive coercion).
|
||||
return _md_note(model.Note(text=model._safe_str(block)))
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Entry point.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def render_md(chapters: list, out_path: str, meta: dict = None) -> dict:
|
||||
"""Serialize a list of Chapters into a single self-contained Markdown file.
|
||||
|
||||
The output leads with ``# <title>``, a metadata blockquote and a numbered
|
||||
``## Índice`` linking each chapter, then one ``## N. <title>`` section per
|
||||
chapter with its blocks. Tables become Markdown tables (every row dumped),
|
||||
figures become caption + underlying data table, glossary markers are stripped
|
||||
while ``**bold**`` is kept. Designed to be pasted into an LLM.
|
||||
|
||||
Args:
|
||||
chapters: a list of ``Chapter`` (dataclasses or dicts); normalized
|
||||
defensively with ``model.as_chapters``.
|
||||
out_path: filesystem path for the ``.md`` (parent dirs are created).
|
||||
meta: optional dict. Recognised keys: ``title``, ``ctx`` (dict with
|
||||
``dataset_name``/``source_origin``/``storage``/``n_rows``/``n_cols``),
|
||||
``generated_at``, ``embed_figures`` (export PNGs beside the .md,
|
||||
default False).
|
||||
|
||||
Returns:
|
||||
dict (never raises): ``{path: str|None, n_chars: int,
|
||||
chapters: list[{id, version}], note: str}``. On a fatal error ``path`` is
|
||||
None and ``note`` explains why.
|
||||
"""
|
||||
meta = meta or {}
|
||||
chapters = model.as_chapters(chapters)
|
||||
title = model._safe_str(meta.get("title")) or model.ENGINE_NAME
|
||||
|
||||
# Edge: nothing to render -> a minimal but valid Markdown document.
|
||||
if not chapters:
|
||||
content = (f"# {title}\n\n"
|
||||
"*(documento vacío — sin capítulos aplicables)*\n")
|
||||
return _write(out_path, content, [], "documento vacío")
|
||||
|
||||
counter = [0] # document-wide figure counter for unique PNG names.
|
||||
notes: list = []
|
||||
segments: list = [f"# {title}"]
|
||||
|
||||
meta_lines = _meta_block(meta)
|
||||
if meta_lines:
|
||||
segments.append("\n".join(f"> {ln}" for ln in meta_lines))
|
||||
|
||||
# Numbered index. The anchor matches the chapter heading emitted below
|
||||
# (``## N. <title>``) in GitHub slug style.
|
||||
chap_heads = []
|
||||
idx_lines = ["## Índice"]
|
||||
for i, ch in enumerate(chapters, 1):
|
||||
head_text = f"{i}. {model._safe_str(ch.title)}"
|
||||
anchor = _slug(head_text)
|
||||
chap_heads.append((head_text, anchor))
|
||||
idx_lines.append(f"{i}. [{model._safe_str(ch.title)}](#{anchor})")
|
||||
segments.append("\n".join(idx_lines))
|
||||
|
||||
chapters_meta = []
|
||||
for i, ch in enumerate(chapters, 1):
|
||||
segments.append("---")
|
||||
head_text, _anchor = chap_heads[i - 1]
|
||||
segments.append(f"## {head_text}")
|
||||
|
||||
blocks = list(ch.blocks or [])
|
||||
# Omit a leading level-1 Heading that just repeats the chapter title.
|
||||
if blocks:
|
||||
b0 = blocks[0]
|
||||
if (getattr(b0, "kind", "") == "heading"
|
||||
and int(getattr(b0, "level", 1) or 1) == 1
|
||||
and _clean_terms(getattr(b0, "text", "")).strip()
|
||||
== model._safe_str(ch.title).strip()):
|
||||
blocks = blocks[1:]
|
||||
|
||||
for block in blocks:
|
||||
try:
|
||||
seg = _serialize_block(block, meta, out_path, counter)
|
||||
except Exception as e: # noqa: BLE001
|
||||
seg = _md_note(model.Note(text=model._safe_str(block)))
|
||||
notes.append(
|
||||
f"bloque '{getattr(block, 'kind', '?')}' del capítulo "
|
||||
f"'{ch.id}' degradado: {e}")
|
||||
if seg:
|
||||
segments.append(seg)
|
||||
chapters_meta.append({"id": ch.id, "version": ch.version})
|
||||
|
||||
content = "\n\n".join(segments) + "\n"
|
||||
note = f"{len(content)} caracteres"
|
||||
if notes:
|
||||
note += " · " + "; ".join(notes)
|
||||
return _write(out_path, content, chapters_meta, note)
|
||||
|
||||
|
||||
def _write(out_path: str, content: str, chapters_meta: list, note: str) -> dict:
|
||||
"""Write the Markdown to disk (creating parents). dict-no-throw."""
|
||||
try:
|
||||
parent = os.path.dirname(os.path.abspath(out_path))
|
||||
os.makedirs(parent, exist_ok=True)
|
||||
with open(out_path, "w", encoding="utf-8") as fh:
|
||||
fh.write(content)
|
||||
except Exception as e: # noqa: BLE001 — never raise from the writer.
|
||||
return {"path": None, "n_chars": 0, "chapters": [],
|
||||
"note": f"no se pudo escribir el Markdown: {e}"}
|
||||
return {"path": out_path, "n_chars": len(content),
|
||||
"chapters": chapters_meta, "note": note}
|
||||
@@ -675,6 +675,61 @@ def _measure_figure_like(block) -> float:
|
||||
return target_h + 0.04 + cap_h + _GAP
|
||||
|
||||
|
||||
def _measure_kv_table(block) -> float:
|
||||
"""Faithful height of a KVTable — matches ``_place_kv_table``.
|
||||
|
||||
Counts the optional title heading and, per row, the wrapped VALUE column
|
||||
(the label column never wraps in the placer). The previous estimate assumed
|
||||
one line per row and ignored the title, so a column's keep-together Group
|
||||
under-budgeted the figure and the chart spilled to the next page. Keep this in
|
||||
sync with ``_place_kv_table``."""
|
||||
h = 0.0
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
h += _measure_heading_text(title, 2)
|
||||
rows = getattr(block, "rows", []) or []
|
||||
key_w = 1.9
|
||||
val_chars = tl.chars_per_line(_USABLE_W - key_w - 0.1, _FS_BODY)
|
||||
lh = tl.line_height_in(_FS_BODY)
|
||||
for row in rows:
|
||||
try:
|
||||
value = row[1]
|
||||
except Exception: # noqa: BLE001
|
||||
value = ""
|
||||
v_lines = tl.wrap(model._safe_str(value), val_chars)
|
||||
h += lh * len(v_lines) + _ROW_VPAD
|
||||
return h + _GAP
|
||||
|
||||
|
||||
def _measure_data_table(block) -> float:
|
||||
"""Faithful height of a DataTable — matches ``_place_data_table``.
|
||||
|
||||
Counts the optional title heading, the wrapped header row, every wrapped data
|
||||
row (per-column wrap via the same ``_col_widths``/``_wrap_row`` the placer
|
||||
uses) and the optional note. Keep this in sync with ``_place_data_table``."""
|
||||
h = 0.0
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
h += _measure_heading_text(title, 2)
|
||||
header = list(getattr(block, "header", []) or [])
|
||||
rows = list(getattr(block, "rows", []) or [])
|
||||
fs = _FS_CELL
|
||||
widths = _col_widths(header, rows, fs)
|
||||
lh = tl.line_height_in(fs)
|
||||
if header:
|
||||
header_lines = _wrap_row(header, widths, fs)
|
||||
h += lh * max((len(c) for c in header_lines), default=1) + _ROW_VPAD * 2
|
||||
for r in rows:
|
||||
cells_lines = _wrap_row(r, widths, fs)
|
||||
h += lh * max((len(c) for c in cells_lines), default=1) + _ROW_VPAD * 2
|
||||
note = getattr(block, "note", None)
|
||||
if note:
|
||||
nlines = tl.wrap(model._safe_str(note),
|
||||
tl.chars_per_line(_USABLE_W, _FS_NOTE))
|
||||
h += tl.line_height_in(_FS_NOTE) * len(nlines)
|
||||
return h + _GAP
|
||||
|
||||
|
||||
def _measure_block(st: _PdfState, block) -> float:
|
||||
kind = getattr(block, "kind", "")
|
||||
try:
|
||||
@@ -690,13 +745,9 @@ def _measure_block(st: _PdfState, block) -> float:
|
||||
tl.chars_per_line(_USABLE_W, _FS_NOTE))
|
||||
return tl.line_height_in(_FS_NOTE) * len(lines) + _GAP
|
||||
if kind == "kv_table":
|
||||
rows = getattr(block, "rows", []) or []
|
||||
return (tl.line_height_in(_FS_BODY) + _ROW_VPAD) * (len(rows) + 1) \
|
||||
+ _GAP
|
||||
return _measure_kv_table(block)
|
||||
if kind == "data_table":
|
||||
rows = getattr(block, "rows", []) or []
|
||||
return (tl.line_height_in(_FS_CELL) + _ROW_VPAD * 2) \
|
||||
* (len(rows) + 1) + _GAP
|
||||
return _measure_data_table(block)
|
||||
if kind == "group":
|
||||
return sum(_measure_block(st, b)
|
||||
for b in (getattr(block, "blocks", []) or []))
|
||||
@@ -735,6 +786,10 @@ def _place_group(st: _PdfState, block) -> None:
|
||||
blocks = getattr(block, "blocks", []) or []
|
||||
if not blocks:
|
||||
return
|
||||
# Opt-in page break: start this group on a fresh page unless the current one
|
||||
# is still empty (so a chapter can give each unit its own page).
|
||||
if getattr(block, "page_break_before", False) and st.y > _CONTENT_TOP + 1e-6:
|
||||
_new_page(st)
|
||||
avail_full = _CONTENT_BOTTOM - _CONTENT_TOP
|
||||
_shrink_group_figures(st, blocks, avail_full)
|
||||
total = sum(_measure_block(st, b) for b in blocks)
|
||||
|
||||
@@ -625,6 +625,55 @@ def _measure_figure_like(block) -> float:
|
||||
return target_h + 0.05 + cap_h + _GAP
|
||||
|
||||
|
||||
def _measure_kv_table(block) -> float:
|
||||
"""Faithful KVTable height — matches ``_place_kv_table`` (rendered as a
|
||||
Campo/Valor data table with wrapped cells). The previous estimate assumed one
|
||||
line per row and ignored the title, so a keep-together Group under-budgeted
|
||||
the figure and the chart spilled to the next slide. Keep in sync."""
|
||||
h = 0.0
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
h += _measure_heading_text(title, 2)
|
||||
rows = getattr(block, "rows", []) or []
|
||||
data_rows = []
|
||||
for row in rows:
|
||||
try:
|
||||
label, value = row[0], row[1]
|
||||
except Exception: # noqa: BLE001
|
||||
label, value = str(row), ""
|
||||
data_rows.append([model._safe_str(label), model._safe_str(value)])
|
||||
header = ["Campo", "Valor"]
|
||||
widths = _col_widths(header, data_rows)
|
||||
fs = _FS_CELL
|
||||
h += _row_height_in(header, widths, fs)
|
||||
for r in data_rows:
|
||||
h += _row_height_in(r, widths, fs)
|
||||
return h + _GAP
|
||||
|
||||
|
||||
def _measure_data_table(block) -> float:
|
||||
"""Faithful DataTable height — matches ``_place_data_table`` (title heading +
|
||||
wrapped header + every wrapped row + optional note). Keep in sync."""
|
||||
h = 0.0
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
h += _measure_heading_text(title, 2)
|
||||
header = list(getattr(block, "header", []) or [])
|
||||
rows = list(getattr(block, "rows", []) or [])
|
||||
fs = _FS_CELL
|
||||
widths = _col_widths(header, rows)
|
||||
if header:
|
||||
h += _row_height_in(header, widths, fs)
|
||||
for r in rows:
|
||||
h += _row_height_in(r, widths, fs)
|
||||
note = getattr(block, "note", None)
|
||||
if note:
|
||||
nlines = tl.wrap(model._safe_str(note),
|
||||
tl.chars_per_line(_USABLE_W, _FS_NOTE))
|
||||
h += tl.line_height_in(_FS_NOTE) * len(nlines) + 0.05
|
||||
return h + _GAP
|
||||
|
||||
|
||||
def _measure_block(st: _PptxState, block) -> float:
|
||||
kind = getattr(block, "kind", "")
|
||||
try:
|
||||
@@ -639,9 +688,10 @@ def _measure_block(st: _PptxState, block) -> float:
|
||||
lines = tl.wrap(getattr(block, "text", ""),
|
||||
tl.chars_per_line(_USABLE_W, _FS_NOTE))
|
||||
return tl.line_height_in(_FS_NOTE) * len(lines) + 0.05 + _GAP
|
||||
if kind in ("kv_table", "data_table"):
|
||||
rows = getattr(block, "rows", []) or []
|
||||
return (tl.line_height_in(_FS_CELL) + 0.10) * (len(rows) + 1) + _GAP
|
||||
if kind == "kv_table":
|
||||
return _measure_kv_table(block)
|
||||
if kind == "data_table":
|
||||
return _measure_data_table(block)
|
||||
if kind == "group":
|
||||
return sum(_measure_block(st, b)
|
||||
for b in (getattr(block, "blocks", []) or []))
|
||||
@@ -664,10 +714,14 @@ def _shrink_group_figures(st: _PptxState, blocks: list, avail_full: float) -> No
|
||||
if getattr(b, "kind", "") not in ("figure", "image"))
|
||||
fig_overhead = tl.line_height_in(_FS_NOTE) + 0.05 + 0.05 + _GAP
|
||||
budget = avail_full - nonfig_h - 0.10 * len(fig_blocks)
|
||||
if budget <= 1.0:
|
||||
# Low thresholds: a 16:9 slide is short, so a content-heavy column (cardinality
|
||||
# table + top-k + chart) only fits if the chart is allowed to shrink small.
|
||||
# Prefer a small-but-present chart on the SAME slide over splitting the column
|
||||
# across slides (matches the PDF renderer's keep-together philosophy).
|
||||
if budget <= 0.6:
|
||||
return # not enough room to keep together; let it flow (degrade).
|
||||
per = budget / len(fig_blocks) - fig_overhead
|
||||
if per <= 0.8:
|
||||
if per <= 0.35:
|
||||
return
|
||||
for fb in fig_blocks:
|
||||
cur = getattr(fb, "height_in", None)
|
||||
@@ -675,12 +729,90 @@ def _shrink_group_figures(st: _PptxState, blocks: list, avail_full: float) -> No
|
||||
if isinstance(cur, (int, float)) and cur > 0 else per)
|
||||
|
||||
|
||||
# Minimum height (inches) reserved for a figure inside a keep-together group on
|
||||
# the short 16:9 slide. When a high-cardinality column's table(s) would otherwise
|
||||
# leave no room, the data table is trimmed (with an honest note) so the chart
|
||||
# stays on the SAME slide next to its table instead of spilling to the next one.
|
||||
_GROUP_MIN_FIG_H = 1.3
|
||||
|
||||
|
||||
def _trim_data_table_to_budget(block, budget: float):
|
||||
"""Return a copy of a DataTable whose rows fit within ``budget`` inches.
|
||||
|
||||
Keeps the title, header, as many leading rows as fit (at least one) and an
|
||||
honest note reporting how many of the original rows are shown. NEVER mutates
|
||||
the original block — the same Chapter blocks are rendered by the PDF renderer,
|
||||
which keeps the full table (an A5 page fits it)."""
|
||||
header = list(getattr(block, "header", []) or [])
|
||||
rows = list(getattr(block, "rows", []) or [])
|
||||
title = getattr(block, "title", None)
|
||||
fs = _FS_CELL
|
||||
widths = _col_widths(header, rows)
|
||||
fixed = 0.0
|
||||
if title:
|
||||
fixed += _measure_heading_text(title, 2)
|
||||
if header:
|
||||
fixed += _row_height_in(header, widths, fs)
|
||||
note_h = tl.line_height_in(_FS_NOTE) + 0.05
|
||||
avail_rows = budget - fixed - note_h - _GAP
|
||||
kept = []
|
||||
used = 0.0
|
||||
for r in rows:
|
||||
rh = _row_height_in(r, widths, fs)
|
||||
if used + rh > avail_rows and kept:
|
||||
break
|
||||
kept.append(r)
|
||||
used += rh
|
||||
if len(kept) >= len(rows):
|
||||
return block # already fits; keep the original (with its own note).
|
||||
note = (f"top {len(kept)} de {len(rows)} categorías mostradas "
|
||||
"(recortado para caber en el slide; el PDF muestra más)")
|
||||
return model.DataTable(header=header, rows=kept, title=title, note=note)
|
||||
|
||||
|
||||
def _fit_group_blocks(st: _PptxState, blocks: list, avail_full: float) -> list:
|
||||
"""Return a slide-fitting copy of a keep-together group's blocks.
|
||||
|
||||
On the short 16:9 slide a high-cardinality column's top-k table plus its
|
||||
chart can overflow. Reserve ``_GROUP_MIN_FIG_H`` for the (later shrunk) figure
|
||||
and trim the data table(s) to what is left, so every column keeps its chart
|
||||
next to its table on ONE slide. No-op when the group has no figure+table pair
|
||||
(e.g. id-like columns already drop the top-k upstream, or it already fits)."""
|
||||
has_fig = any(getattr(b, "kind", "") in ("figure", "image") for b in blocks)
|
||||
tbls = [b for b in blocks if getattr(b, "kind", "") == "data_table"]
|
||||
if not (has_fig and tbls):
|
||||
return blocks
|
||||
fixed_h = sum(_measure_block(st, b) for b in blocks
|
||||
if getattr(b, "kind", "") not in ("figure", "image",
|
||||
"data_table"))
|
||||
tables_h = sum(_measure_block(st, b) for b in tbls)
|
||||
budget_tables = avail_full - fixed_h - _GROUP_MIN_FIG_H
|
||||
if tables_h <= budget_tables:
|
||||
return blocks # already fits next to a min-height figure; leave intact.
|
||||
out = []
|
||||
for b in blocks:
|
||||
if getattr(b, "kind", "") != "data_table":
|
||||
out.append(b)
|
||||
continue
|
||||
trimmed = _trim_data_table_to_budget(b, max(budget_tables, 0.8))
|
||||
out.append(trimmed)
|
||||
budget_tables -= _measure_data_table(trimmed)
|
||||
return out
|
||||
|
||||
|
||||
def _place_group(st: _PptxState, block) -> None:
|
||||
"""Render a keep-together Group: move it whole to the next slide if needed."""
|
||||
blocks = getattr(block, "blocks", []) or []
|
||||
if not blocks:
|
||||
return
|
||||
# Opt-in slide break: start this group on a fresh slide unless the current one
|
||||
# is still empty (so a chapter can give each unit its own slide).
|
||||
if getattr(block, "page_break_before", False) and st.y > _CONTENT_TOP + 1e-6:
|
||||
_new_slide(st, cont=True)
|
||||
avail_full = _CONTENT_BOTTOM - _CONTENT_TOP
|
||||
# Trim oversized tables first (keeps the chart on the same slide), then shrink
|
||||
# the figure to share the remaining room.
|
||||
blocks = _fit_group_blocks(st, blocks, avail_full)
|
||||
_shrink_group_figures(st, blocks, avail_full)
|
||||
total = sum(_measure_block(st, b) for b in blocks)
|
||||
if total <= avail_full:
|
||||
|
||||
@@ -4,10 +4,10 @@ name: column_quality_score
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
version: "2.0.0"
|
||||
purity: pure
|
||||
signature: "def column_quality_score(col: dict) -> dict"
|
||||
description: "Calcula un score de calidad de datos 0-100 para un ColumnProfile del grupo eda, con desglose completeness/validity/consistency y lista de issues legibles. Funcion pura, no muta el input."
|
||||
description: "Calcula un score de calidad de datos 0-100 para un ColumnProfile del grupo eda. Combina completeness (0.6) y validity (0.4) con renormalizacion por aplicabilidad; los outliers, columnas constantes e ids NO bajan el score (van a observations). Devuelve desglose por dimension, issues (defectos) y observations (señales analiticas). Funcion pura, no muta el input."
|
||||
tags: [eda, data-quality, profiling, scoring, datascience]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
@@ -17,20 +17,26 @@ error_type: ""
|
||||
imports: []
|
||||
example: |
|
||||
from datascience import column_quality_score
|
||||
col = {"name": "precio", "inferred_type": "float", "null_pct": 0.2,
|
||||
"unique_pct": 0.4, "flags": [], "numeric": {"outlier_pct": 0.08}}
|
||||
col = {"name": "precio", "inferred_type": "numeric", "null_pct": 0.2,
|
||||
"unique_pct": 0.4, "flags": [], "numeric": {"outlier_pct": 8.0}}
|
||||
column_quality_score(col)
|
||||
# {"score": 86.8, "completeness": 0.8, "validity": 0.92,
|
||||
# "consistency": 1.0, "issues": ["20% nulos", "8% outliers"]}
|
||||
# {"score": 88.0, "completeness": 0.8, "validity": 1.0,
|
||||
# "applicable": ["completeness", "validity"], "issues": ["20% nulos"],
|
||||
# "observations": ["8% de valores atípicos (z-score>3): ..."]}
|
||||
tested: true
|
||||
tests:
|
||||
- "test_clean_column_high_score"
|
||||
- "test_half_null_lowers_completeness_and_score"
|
||||
- "test_constant_column_flags_issue"
|
||||
- "test_weights_60_40_native_type"
|
||||
- "test_outliers_do_not_penalize_score"
|
||||
- "test_nulls_lower_score_more_than_outliers"
|
||||
- "test_validity_from_parse_rate_lowers_score"
|
||||
- "test_validity_from_match_rate"
|
||||
- "test_free_text_renormalizes_to_completeness_only"
|
||||
- "test_all_null_column_scores_zero"
|
||||
- "test_constant_column_scores_full_and_is_observation"
|
||||
- "test_high_cardinality_id_scores_full_and_is_observation"
|
||||
- "test_mostly_null_no_double_counts_validity"
|
||||
- "test_empty_dict_does_not_crash"
|
||||
- "test_outliers_penalize_validity"
|
||||
- "test_mostly_null_flag_halves_validity"
|
||||
- "test_high_cardinality_text_flagged_as_id"
|
||||
- "test_none_values_treated_defensively"
|
||||
- "test_does_not_mutate_input"
|
||||
test_file_path: "python/functions/datascience/column_quality_score_test.py"
|
||||
@@ -38,16 +44,22 @@ file_path: "python/functions/datascience/column_quality_score.py"
|
||||
params:
|
||||
- name: col
|
||||
desc: >
|
||||
ColumnProfile dict del grupo eda (p.ej. salida de summarize_table_duckdb).
|
||||
Se leen sus claves de forma defensiva con .get(...) y se toleran valores
|
||||
None. Claves usadas: null_pct (0-1), inferred_type, semantic_type,
|
||||
unique_pct (0-1), flags (list[str], reconoce "constant"/"mostly_null"),
|
||||
numeric ({outlier_pct: 0-1, ...}|None) y match_rate (opcional, 0-1).
|
||||
ColumnProfile dict del grupo eda (p.ej. salida de summarize_table_duckdb /
|
||||
profile_table). Se leen sus claves de forma defensiva con .get(...) y se
|
||||
toleran valores None. Claves usadas: null_pct (0-1), n_rows, empty_count
|
||||
(texto), inferred_type, semantic_type, validity_rate (0-1, lo expone
|
||||
profile_table al promocionar texto a numero/fecha), match_rate (0-1),
|
||||
unique_pct (0-1), flags (list[str], reconoce
|
||||
"constant"/"possible_id"/"high_cardinality") y numeric ({outlier_pct: 0-100,
|
||||
skew, ...}|None).
|
||||
output: >
|
||||
dict con score (float 0-100, redondeado a 1 decimal), completeness (0-1),
|
||||
validity (0-1), consistency (0-1) e issues (list[str] de descripciones
|
||||
legibles de los problemas detectados). score = round(100 * (0.5*completeness
|
||||
+ 0.3*validity + 0.2*consistency), 1).
|
||||
dict con score (float 0-100, 1 decimal), completeness (0-1), validity (0-1 o
|
||||
None si no aplicable), dimensions ({completeness, validity}), applicable
|
||||
(list[str] de dimensiones que entraron en el score), issues (list[str] SOLO de
|
||||
defectos de calidad: nulos, vacios, valores no conformes) y observations
|
||||
(list[str] de señales analiticas que NO bajan el score: outliers, columna
|
||||
constante, posible id, asimetria). score = round(100 * (0.6*completeness +
|
||||
0.4*validity) / pesos_aplicables, 1), renormalizado cuando validity no aplica.
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
@@ -59,51 +71,71 @@ from datascience import column_quality_score
|
||||
col = {
|
||||
"name": "precio",
|
||||
"physical_type": "DOUBLE",
|
||||
"inferred_type": "float",
|
||||
"inferred_type": "numeric",
|
||||
"semantic_type": "",
|
||||
"count": 800,
|
||||
"n_rows": 1000,
|
||||
"null_count": 200,
|
||||
"null_pct": 0.20,
|
||||
"distinct_count": 400,
|
||||
"unique_pct": 0.40,
|
||||
"flags": [],
|
||||
"numeric": {"outlier_pct": 0.08},
|
||||
"numeric": {"outlier_pct": 8.0, "skew": 0.3},
|
||||
"categorical": None,
|
||||
"datetime": None,
|
||||
}
|
||||
|
||||
column_quality_score(col)
|
||||
# {
|
||||
# "score": 86.8,
|
||||
# "completeness": 0.8, # 1 - 0.20
|
||||
# "validity": 0.92, # 1 - min(0.08, 0.3)
|
||||
# "consistency": 1.0,
|
||||
# "issues": ["20% nulos", "8% outliers"],
|
||||
# "score": 88.0, # 100 * (0.6*0.8 + 0.4*1.0)
|
||||
# "completeness": 0.8, # 1 - 0.20
|
||||
# "validity": 1.0, # numerica nativa: el tipo es conforme
|
||||
# "dimensions": {"completeness": 0.8, "validity": 1.0},
|
||||
# "applicable": ["completeness", "validity"],
|
||||
# "issues": ["20% nulos"], # SOLO defectos de calidad
|
||||
# "observations": ["8% de valores atípicos (z-score>3): ..."], # NO bajan score
|
||||
# }
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando hayas perfilado una tabla con el grupo `eda` (p.ej.
|
||||
`summarize_table_duckdb`) y necesites un numero 0-100 por columna para
|
||||
ordenar/priorizar limpieza de datos, pintar semaforos de calidad en un
|
||||
dashboard, o decidir que columnas descartar antes de modelar. Es la capa de
|
||||
scoring sobre el ColumnProfile crudo: lee el perfil, no toca los datos.
|
||||
`summarize_table_duckdb` / `profile_table`) y necesites un numero 0-100 por
|
||||
columna para ordenar/priorizar limpieza de datos, pintar semaforos de calidad,
|
||||
o decidir que columnas descartar antes de modelar. Separa los **defectos de
|
||||
calidad reales** (`issues`: nulos, vacios, valores que no parsean a su tipo) de
|
||||
las **observaciones analiticas** (`observations`: outliers, columnas constantes,
|
||||
ids), que se reportan pero no penalizan. Es la capa de scoring sobre el
|
||||
ColumnProfile crudo: lee el perfil, no toca los datos.
|
||||
|
||||
## Notas
|
||||
## Gotchas
|
||||
|
||||
Funcion pura, sin I/O ni dependencias externas, no muta `col`. Lee todas las
|
||||
claves con `.get(...)` y tolera que vengan en `None` (un ColumnProfile recien
|
||||
salido de `summarize_table_duckdb` trae muchas claves a `None`), por lo que
|
||||
nunca falla por claves ausentes — un `{}` produce un resultado bien definido.
|
||||
Funcion pura, sin I/O, no muta `col`. Aun asi conviene saber:
|
||||
|
||||
Pesos del score: completeness 0.5, validity 0.3, consistency 0.2.
|
||||
- **Los outliers NO bajan el score.** Un valor extremo puede ser real y correcto
|
||||
(un cliente que compra mucho); detectar atipicos es analisis de la
|
||||
distribucion, no un juicio de correccion. Salen en `observations`, no en
|
||||
`issues`. Mismo trato para columnas constantes e identificadores de alta
|
||||
cardinalidad: son observaciones, no defectos.
|
||||
- **`validity` puede ser `None`** (no aplicable): texto libre sin `semantic_type`
|
||||
ni `validity_rate`, o columna 100% nula. En ese caso el score se renormaliza a
|
||||
solo `completeness` (la columna no se premia ni castiga por algo no medible).
|
||||
- **`outlier_pct` se interpreta en escala 0-100** (la que emite
|
||||
`describe_numeric`, z-score>3). Pasar una fraccion 0-1 produce un texto de
|
||||
observacion con el % equivocado, pero NUNCA afecta al score.
|
||||
- **`validity_rate` lo puebla `profile_table`** al promocionar una columna de
|
||||
texto a numero/fecha (fraccion que parsea). Si no esta presente y el tipo es
|
||||
nativo numerico/fecha/bool, `validity = 1.0`.
|
||||
- Sin doble conteo: la falta de datos cuenta solo en `completeness` (el antiguo
|
||||
castigo de `mostly_null` sobre `validity` se elimino).
|
||||
|
||||
- **completeness** = `1 - null_pct` (None -> 0 nulls -> 1.0).
|
||||
- **validity**: parte de 1.0 y penaliza `min(outlier_pct, 0.3)` en columnas
|
||||
numericas, `0.5 * (1 - match_rate)` si hay `semantic_type` declarado con
|
||||
`match_rate` bajo disponible, y multiplica por 0.5 si el flag `mostly_null`
|
||||
esta presente.
|
||||
- **consistency**: 1.0 salvo flag `constant` (-> 0.3, columna poco informativa)
|
||||
o texto con `unique_pct > 0.9` (-> 0.6, posible id de alta cardinalidad).
|
||||
## Capability growth log
|
||||
|
||||
- v2.0.0 (2026-06-30) — nueva formula de calidad (report 2046): pesos 60/40
|
||||
(completeness/validity) con renormalizacion por aplicabilidad; se elimina la
|
||||
dimension `consistency`-como-informatividad y el doble castigo de
|
||||
`mostly_null`; los outliers/constantes/ids salen del score a `observations`;
|
||||
validity mide conformidad real (parse rate / match rate / tipo nativo). Salida
|
||||
ampliada con `dimensions`, `applicable` y `observations`.
|
||||
- v1.0.0 — version inicial: pesos 50/30/20 (completeness/validity/consistency),
|
||||
los outliers penalizaban validity (con bug de escala) y consistency penalizaba
|
||||
informatividad.
|
||||
|
||||
@@ -1,34 +1,78 @@
|
||||
"""Score de calidad de datos (0-100) para un ColumnProfile del grupo eda.
|
||||
|
||||
Funcion pura: dado el perfil de una columna producido por el grupo de
|
||||
capacidad `eda` (p.ej. summarize_table_duckdb), calcula un score agregado
|
||||
de calidad junto a su desglose en completeness / validity / consistency y
|
||||
una lista de issues legibles. No realiza I/O ni muta el input.
|
||||
capacidad `eda` (p.ej. summarize_table_duckdb / profile_table), calcula un
|
||||
score agregado de calidad junto a su desglose por dimension y dos listas
|
||||
legibles separadas: `issues` (defectos de calidad reales que SI bajan el
|
||||
score) y `observations` (señales analiticas que NO bajan el score). No
|
||||
realiza I/O ni muta el input.
|
||||
|
||||
Modelo (DAMA-DMBOK / ISO 8000), ver report 2046:
|
||||
|
||||
- Solo entran en el score las dimensiones medibles automaticamente desde el
|
||||
perfil, sin fuente externa de verdad: completeness y validity por columna.
|
||||
- Renormalizacion por aplicabilidad: si una dimension no es medible en la
|
||||
columna (texto libre sin semantica -> validity no aplica; columna 100% nula
|
||||
-> validity no medible), se excluye y los pesos se renormalizan sobre las
|
||||
aplicables. Una columna ni se premia ni se castiga por algo no medible.
|
||||
- Sin doble conteo: la falta de datos cuenta solo en completeness (se elimino
|
||||
el antiguo castigo extra de `mostly_null` sobre validity).
|
||||
- Los OUTLIERS NO bajan la calidad. Un valor extremo puede ser real y
|
||||
correcto; detectar atipicos es analisis de la distribucion, no un juicio de
|
||||
coreccion. Outliers, columnas constantes e identificadores de alta
|
||||
cardinalidad pasan a `observations`, nunca a `issues`.
|
||||
"""
|
||||
|
||||
|
||||
# Pesos base de las dimensiones de columna (se renormalizan por aplicabilidad).
|
||||
_W_COMPLETENESS = 0.6
|
||||
_W_VALIDITY = 0.4
|
||||
|
||||
# Tipos inferidos cuyo almacen garantiza la conformidad de tipo (validity=1.0)
|
||||
# cuando NO vienen de una promocion de texto (en cuyo caso manda validity_rate).
|
||||
_NATIVE_TYPED = ("numeric", "integer", "float", "datetime", "date", "boolean", "bool")
|
||||
|
||||
|
||||
def column_quality_score(col: dict) -> dict:
|
||||
"""Calcula un score de calidad de datos 0-100 para un ColumnProfile.
|
||||
|
||||
El score pondera tres dimensiones:
|
||||
- completeness (0.5): proporcion de valores no nulos.
|
||||
- validity (0.3): ausencia de outliers / heuristicas de validez.
|
||||
- consistency (0.2): la columna aporta informacion (no constante, no ruido).
|
||||
El score combina solo dimensiones de calidad medibles desde el perfil, con
|
||||
renormalizacion por aplicabilidad:
|
||||
|
||||
- completeness (peso base 0.6, siempre aplica): proporcion de valores
|
||||
presentes = 1 - null_pct. En texto, las celdas vacias (`empty_count`)
|
||||
tambien cuentan como faltantes.
|
||||
- validity (peso base 0.4, cuando hay un criterio de validacion real):
|
||||
fraccion de valores no nulos conformes a su tipo/semantica. Tipo nativo
|
||||
numerico/fecha/bool = 1.0; texto promovido a numero/fecha = parse rate
|
||||
(`validity_rate`); texto con `semantic_type` regexable = `match_rate`;
|
||||
texto libre o columna 100% nula = NO aplicable (renormaliza a solo
|
||||
completeness).
|
||||
|
||||
Los outliers, columnas constantes, identificadores y asimetria fuerte NO
|
||||
bajan el score: se devuelven en `observations`.
|
||||
|
||||
Args:
|
||||
col: ColumnProfile dict del grupo eda. Se leen las claves de forma
|
||||
defensiva con .get(...) y se tolera que muchas vengan en None.
|
||||
Claves relevantes: null_pct, inferred_type, semantic_type,
|
||||
unique_pct, flags (list[str]), numeric ({outlier_pct, ...}|None),
|
||||
match_rate (opcional).
|
||||
Claves relevantes: null_pct (0-1), n_rows, empty_count,
|
||||
inferred_type, semantic_type, validity_rate (0-1, lo expone
|
||||
profile_table al promocionar texto a numero/fecha), match_rate
|
||||
(0-1), unique_pct (0-1), flags (list[str], reconoce
|
||||
"constant"/"possible_id"/"high_cardinality"), numeric
|
||||
({outlier_pct: 0-100, skew, ...}|None).
|
||||
|
||||
Returns:
|
||||
dict con:
|
||||
score (float, 0-100, redondeado a 1 decimal),
|
||||
completeness (float, 0-1),
|
||||
validity (float, 0-1),
|
||||
consistency (float, 0-1),
|
||||
issues (list[str]) descripciones legibles de los problemas.
|
||||
score (float 0-100, redondeado a 1 decimal),
|
||||
completeness (float 0-1),
|
||||
validity (float 0-1 | None si no aplicable),
|
||||
dimensions ({completeness, validity}),
|
||||
applicable (list[str] de dimensiones que entraron en el score),
|
||||
issues (list[str]) SOLO defectos de calidad (nulos, vacios,
|
||||
valores no conformes a su tipo/semantica),
|
||||
observations (list[str]) señales analiticas que NO bajan el score
|
||||
(outliers, columna constante, posible id, asimetria).
|
||||
"""
|
||||
if not isinstance(col, dict):
|
||||
col = {}
|
||||
@@ -39,103 +83,153 @@ def column_quality_score(col: dict) -> dict:
|
||||
flags = set(flags)
|
||||
|
||||
issues: list[str] = []
|
||||
observations: list[str] = []
|
||||
|
||||
inferred_type = col.get("inferred_type") or ""
|
||||
semantic_type = col.get("semantic_type") or ""
|
||||
|
||||
# --- completeness -------------------------------------------------
|
||||
null_pct = col.get("null_pct")
|
||||
if null_pct is None:
|
||||
null_pct = 0.0
|
||||
try:
|
||||
null_pct = float(null_pct)
|
||||
except (TypeError, ValueError):
|
||||
null_pct = 0.0
|
||||
null_pct = _clamp(null_pct, 0.0, 1.0)
|
||||
# Falta de datos = nulos + (en texto) celdas vacias. Es el unico sitio
|
||||
# donde la falta de datos cuenta: nunca se duplica en validity.
|
||||
null_pct = _clamp(_num(col.get("null_pct"), 0.0), 0.0, 1.0)
|
||||
completeness = 1.0 - null_pct
|
||||
if null_pct > 0:
|
||||
issues.append(f"{round(null_pct * 100)}% nulos")
|
||||
issues.append(f"{_pct(null_pct)} nulos")
|
||||
|
||||
# --- validity -----------------------------------------------------
|
||||
validity = 1.0
|
||||
inferred_type = col.get("inferred_type") or ""
|
||||
empty_frac = 0.0
|
||||
n_rows = col.get("n_rows")
|
||||
empty_count = col.get("empty_count")
|
||||
if (
|
||||
isinstance(n_rows, (int, float)) and not isinstance(n_rows, bool) and n_rows > 0
|
||||
and isinstance(empty_count, (int, float)) and not isinstance(empty_count, bool)
|
||||
and empty_count > 0
|
||||
):
|
||||
empty_frac = _clamp(float(empty_count) / float(n_rows), 0.0, 1.0)
|
||||
completeness = _clamp(completeness - empty_frac, 0.0, 1.0)
|
||||
issues.append(f"{_pct(empty_frac)} vacíos")
|
||||
|
||||
numeric = col.get("numeric")
|
||||
is_numeric = inferred_type in ("integer", "float", "numeric") or isinstance(numeric, dict)
|
||||
if isinstance(numeric, dict):
|
||||
outlier_pct = numeric.get("outlier_pct")
|
||||
if outlier_pct is not None:
|
||||
try:
|
||||
outlier_pct = float(outlier_pct)
|
||||
except (TypeError, ValueError):
|
||||
outlier_pct = 0.0
|
||||
outlier_pct = _clamp(outlier_pct, 0.0, 1.0)
|
||||
if outlier_pct > 0:
|
||||
penalty = min(outlier_pct, 0.3)
|
||||
validity -= penalty
|
||||
issues.append(f"{round(outlier_pct * 100)}% outliers")
|
||||
|
||||
# semantic_type declarado pero con baja tasa de match (si la conocemos).
|
||||
semantic_type = col.get("semantic_type") or ""
|
||||
match_rate = col.get("match_rate")
|
||||
if semantic_type and match_rate is not None:
|
||||
try:
|
||||
match_rate = float(match_rate)
|
||||
except (TypeError, ValueError):
|
||||
match_rate = None
|
||||
if match_rate is not None:
|
||||
match_rate = _clamp(match_rate, 0.0, 1.0)
|
||||
if match_rate < 1.0:
|
||||
shortfall = 1.0 - match_rate
|
||||
validity -= 0.5 * shortfall
|
||||
issues.append(
|
||||
f"semantic_type '{semantic_type}' con baja coincidencia "
|
||||
f"({round(match_rate * 100)}%)"
|
||||
)
|
||||
|
||||
if "mostly_null" in flags:
|
||||
validity *= 0.5
|
||||
issues.append("mayoritariamente nula")
|
||||
|
||||
validity = _clamp(validity, 0.0, 1.0)
|
||||
|
||||
# --- consistency --------------------------------------------------
|
||||
consistency = 1.0
|
||||
if "constant" in flags:
|
||||
consistency = 0.3
|
||||
issues.append("columna constante")
|
||||
# --- validity (con renormalizacion por aplicabilidad) -------------
|
||||
# None = no medible -> se excluye del score (no penaliza ni premia).
|
||||
validity = None
|
||||
if completeness <= 0.0:
|
||||
# Columna 100% faltante: no hay valores no nulos sobre los que medir
|
||||
# conformidad. validity no aplica -> el score sale solo de completeness
|
||||
# (= 0). Es el peor defecto de calidad posible.
|
||||
validity = None
|
||||
else:
|
||||
unique_pct = col.get("unique_pct")
|
||||
if unique_pct is not None:
|
||||
try:
|
||||
unique_pct = float(unique_pct)
|
||||
except (TypeError, ValueError):
|
||||
unique_pct = None
|
||||
if (
|
||||
inferred_type == "text"
|
||||
validity_rate = col.get("validity_rate")
|
||||
match_rate = col.get("match_rate")
|
||||
if validity_rate is not None:
|
||||
# Texto promovido a numero/fecha: parse rate real de la muestra.
|
||||
v = _num(validity_rate, None)
|
||||
if v is not None:
|
||||
validity = _clamp(v, 0.0, 1.0)
|
||||
if validity < 1.0:
|
||||
kind = (
|
||||
"número" if inferred_type == "numeric"
|
||||
else "fecha" if inferred_type == "datetime"
|
||||
else inferred_type or "su tipo"
|
||||
)
|
||||
issues.append(
|
||||
f"{_pct(1.0 - validity)} no parsea al tipo {kind}"
|
||||
)
|
||||
elif inferred_type in _NATIVE_TYPED:
|
||||
# Tipo nativo garantizado por el almacen: no hay valores que no
|
||||
# parseen. validity = 1.0 (no se confunde con tener outliers).
|
||||
validity = 1.0
|
||||
elif semantic_type and match_rate is not None:
|
||||
v = _num(match_rate, None)
|
||||
if v is not None:
|
||||
validity = _clamp(v, 0.0, 1.0)
|
||||
if validity < 1.0:
|
||||
issues.append(
|
||||
f"{_pct(1.0 - validity)} no casa con el "
|
||||
f"formato «{semantic_type}»"
|
||||
)
|
||||
else:
|
||||
# Texto libre / categorica sin semantica: no hay criterio honesto
|
||||
# de validez. No aplica.
|
||||
validity = None
|
||||
|
||||
# --- observations (NO bajan el score) -----------------------------
|
||||
numeric = col.get("numeric")
|
||||
if isinstance(numeric, dict):
|
||||
# outlier_pct viene en escala 0-100 desde describe_numeric (z-score>3).
|
||||
outlier_pct = _num(numeric.get("outlier_pct"), None)
|
||||
if outlier_pct is not None and outlier_pct >= 0.05:
|
||||
observations.append(
|
||||
f"{_pct(outlier_pct / 100.0)} de valores atípicos (z-score>3): "
|
||||
"revisar si son errores u observaciones legítimas"
|
||||
)
|
||||
skew = _num(numeric.get("skew"), None)
|
||||
if skew is not None and abs(skew) >= 1.0:
|
||||
observations.append(
|
||||
f"asimetría fuerte (skew={round(skew, 2)}): considerar "
|
||||
"re-expresión antes de modelar"
|
||||
)
|
||||
|
||||
if "constant" in flags:
|
||||
observations.append(
|
||||
"columna constante: aporta poca información para el análisis"
|
||||
)
|
||||
|
||||
unique_pct = _num(col.get("unique_pct"), None)
|
||||
is_id = (
|
||||
"possible_id" in flags
|
||||
or "high_cardinality" in flags
|
||||
or (
|
||||
inferred_type in ("text", "categorical")
|
||||
and unique_pct is not None
|
||||
and _clamp(unique_pct, 0.0, 1.0) > 0.9
|
||||
):
|
||||
consistency = 0.6
|
||||
issues.append("posible id de alta cardinalidad")
|
||||
|
||||
consistency = _clamp(consistency, 0.0, 1.0)
|
||||
|
||||
# --- score agregado ----------------------------------------------
|
||||
score = round(
|
||||
100.0 * (0.5 * completeness + 0.3 * validity + 0.2 * consistency),
|
||||
1,
|
||||
)
|
||||
)
|
||||
if is_id:
|
||||
observations.append(
|
||||
"valores casi únicos: posible identificador (no es un defecto de calidad)"
|
||||
)
|
||||
|
||||
# Silencia warnings sobre la variable de tipo no usada.
|
||||
_ = is_numeric
|
||||
# --- score agregado con renormalizacion ---------------------------
|
||||
applicable = ["completeness"]
|
||||
num = _W_COMPLETENESS * completeness
|
||||
den = _W_COMPLETENESS
|
||||
if validity is not None:
|
||||
applicable.append("validity")
|
||||
num += _W_VALIDITY * validity
|
||||
den += _W_VALIDITY
|
||||
score = round(100.0 * num / den, 1) if den > 0 else 0.0
|
||||
|
||||
return {
|
||||
"score": score,
|
||||
"completeness": completeness,
|
||||
"validity": validity,
|
||||
"consistency": consistency,
|
||||
"dimensions": {"completeness": completeness, "validity": validity},
|
||||
"applicable": applicable,
|
||||
"issues": issues,
|
||||
"observations": observations,
|
||||
}
|
||||
|
||||
|
||||
def _pct(frac: float) -> str:
|
||||
"""Formatea una fraccion 0-1 como porcentaje honesto: «N%» si >=1%, «0.N%»
|
||||
por debajo (para no mostrar «0%» cuando hay un defecto real pequeño)."""
|
||||
p = frac * 100.0
|
||||
if p >= 1.0:
|
||||
return f"{round(p)}%"
|
||||
return f"{p:.1f}%"
|
||||
|
||||
|
||||
def _num(x, default):
|
||||
"""Convierte x a float; devuelve `default` si es None o no parseable."""
|
||||
if x is None:
|
||||
return default
|
||||
if isinstance(x, bool):
|
||||
return default
|
||||
try:
|
||||
return float(x)
|
||||
except (TypeError, ValueError):
|
||||
return default
|
||||
|
||||
|
||||
def _clamp(x: float, lo: float, hi: float) -> float:
|
||||
"""Recorta x al rango [lo, hi]."""
|
||||
if x < lo:
|
||||
|
||||
@@ -1,4 +1,12 @@
|
||||
"""Tests para column_quality_score."""
|
||||
"""Tests para column_quality_score (nueva fórmula, report 2046).
|
||||
|
||||
Verifica las invariantes de la fórmula de calidad:
|
||||
- completeness (0.6) + validity (0.4) con renormalización por aplicabilidad.
|
||||
- Los OUTLIERS no bajan el score (van a observations, no a issues).
|
||||
- Columnas constantes e ids no bajan el score (observations).
|
||||
- Sin doble conteo de la falta de datos.
|
||||
- all-null -> score 0; función pura (no muta el input).
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
@@ -9,11 +17,11 @@ from column_quality_score import column_quality_score
|
||||
|
||||
|
||||
def _clean_numeric_col() -> dict:
|
||||
"""ColumnProfile de una columna numerica sana, sin problemas."""
|
||||
"""ColumnProfile de una columna numérica nativa sana, sin problemas."""
|
||||
return {
|
||||
"name": "edad",
|
||||
"physical_type": "INTEGER",
|
||||
"inferred_type": "integer",
|
||||
"inferred_type": "numeric",
|
||||
"semantic_type": "",
|
||||
"count": 1000,
|
||||
"n_rows": 1000,
|
||||
@@ -28,85 +36,163 @@ def _clean_numeric_col() -> dict:
|
||||
}
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Golden
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_clean_column_high_score():
|
||||
out = column_quality_score(_clean_numeric_col())
|
||||
assert out["score"] > 90
|
||||
assert out["score"] == 100.0
|
||||
assert out["completeness"] == 1.0
|
||||
assert out["validity"] == 1.0
|
||||
assert out["consistency"] == 1.0
|
||||
assert out["applicable"] == ["completeness", "validity"]
|
||||
assert out["issues"] == []
|
||||
assert out["observations"] == []
|
||||
|
||||
|
||||
def test_half_null_lowers_completeness_and_score():
|
||||
def test_weights_60_40_native_type():
|
||||
"""30% nulos en numérica nativa: score = 100*(0.6*0.7 + 0.4*1.0) = 82."""
|
||||
col = _clean_numeric_col()
|
||||
col["null_count"] = 500
|
||||
col["null_pct"] = 0.5
|
||||
clean_score = column_quality_score(_clean_numeric_col())["score"]
|
||||
col["null_pct"] = 0.30
|
||||
col["null_count"] = 300
|
||||
out = column_quality_score(col)
|
||||
assert out["completeness"] == 0.5
|
||||
assert out["score"] < clean_score
|
||||
assert any("nulos" in issue for issue in out["issues"])
|
||||
assert out["completeness"] == 0.7
|
||||
assert out["validity"] == 1.0
|
||||
assert out["score"] == 82.0
|
||||
assert any("nulos" in i for i in out["issues"])
|
||||
|
||||
|
||||
def test_constant_column_flags_issue():
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Outliers FUERA del score
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_outliers_do_not_penalize_score():
|
||||
"""Columna con outliers pero sin nulos -> score máximo; outliers en observations."""
|
||||
col = _clean_numeric_col()
|
||||
col["numeric"] = {"outlier_pct": 18.0, "skew": 0.2} # 18% atípicos (escala 0-100)
|
||||
out = column_quality_score(col)
|
||||
assert out["score"] == 100.0 # los outliers NO bajan la calidad
|
||||
assert out["validity"] == 1.0
|
||||
# No aparecen como problema de calidad...
|
||||
assert not any("atípic" in i or "outlier" in i for i in out["issues"])
|
||||
# ...sino como observación analítica.
|
||||
assert any("atípic" in o for o in out["observations"])
|
||||
|
||||
|
||||
def test_nulls_lower_score_more_than_outliers():
|
||||
"""Vacíos sí penalizan; outliers no: comparar las dos columnas."""
|
||||
con_nulos = _clean_numeric_col()
|
||||
con_nulos["null_pct"] = 0.30
|
||||
con_outliers = _clean_numeric_col()
|
||||
con_outliers["numeric"] = {"outlier_pct": 30.0}
|
||||
assert column_quality_score(con_nulos)["score"] < \
|
||||
column_quality_score(con_outliers)["score"]
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Validity: aplicabilidad y renormalización
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_validity_from_parse_rate_lowers_score():
|
||||
"""Numérica como texto con 20% basura: validity=0.8 -> score=92."""
|
||||
col = {
|
||||
"name": "precio_txt", "inferred_type": "numeric", "semantic_type": "decimal",
|
||||
"null_pct": 0.0, "validity_rate": 0.80, "flags": [], "numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] == 0.8
|
||||
assert out["score"] == 92.0 # 100*(0.6 + 0.4*0.8)
|
||||
assert any("no parsea" in i for i in out["issues"])
|
||||
|
||||
|
||||
def test_validity_from_match_rate():
|
||||
"""Texto con semantic_type y 5% no conforme: validity=0.95."""
|
||||
col = {
|
||||
"name": "email", "inferred_type": "text", "semantic_type": "email",
|
||||
"null_pct": 0.0, "match_rate": 0.95, "unique_pct": 0.5, "flags": [],
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] == 0.95
|
||||
assert out["score"] == 98.0 # 100*(0.6 + 0.4*0.95)
|
||||
assert any("no casa" in i for i in out["issues"])
|
||||
|
||||
|
||||
def test_free_text_renormalizes_to_completeness_only():
|
||||
"""Texto libre sin semántica: validity no aplica -> score = 100*completeness."""
|
||||
col = {
|
||||
"name": "comentario", "inferred_type": "text", "semantic_type": "",
|
||||
"null_pct": 0.30, "unique_pct": 0.5, "flags": [], "numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] is None
|
||||
assert out["applicable"] == ["completeness"]
|
||||
assert out["completeness"] == 0.7
|
||||
assert out["score"] == 70.0 # renormalizado a solo completeness
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Casos límite (report §4.6)
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_all_null_column_scores_zero():
|
||||
col = _clean_numeric_col()
|
||||
col["null_pct"] = 1.0
|
||||
col["null_count"] = 1000
|
||||
out = column_quality_score(col)
|
||||
assert out["completeness"] == 0.0
|
||||
assert out["validity"] is None # no medible sin valores no nulos
|
||||
assert out["score"] == 0.0
|
||||
|
||||
|
||||
def test_constant_column_scores_full_and_is_observation():
|
||||
"""Columna constante: dato válido y completo -> score 100; baja info = observación."""
|
||||
col = _clean_numeric_col()
|
||||
col["flags"] = ["constant"]
|
||||
col["distinct_count"] = 1
|
||||
col["unique_pct"] = 0.001
|
||||
out = column_quality_score(col)
|
||||
assert out["consistency"] == 0.3
|
||||
assert any("constante" in issue for issue in out["issues"])
|
||||
assert out["score"] == 100.0 # NO se castiga la baja informatividad
|
||||
assert not any("constante" in i for i in out["issues"])
|
||||
assert any("constante" in o for o in out["observations"])
|
||||
|
||||
|
||||
def test_high_cardinality_id_scores_full_and_is_observation():
|
||||
"""Id de alta cardinalidad: unicidad perfecta -> score 100; posible id = observación."""
|
||||
col = {
|
||||
"name": "uuid", "inferred_type": "text", "semantic_type": "",
|
||||
"null_pct": 0.0, "unique_pct": 0.99, "flags": ["possible_id"],
|
||||
"numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["score"] == 100.0
|
||||
assert not any("identificador" in i for i in out["issues"])
|
||||
assert any("identificador" in o for o in out["observations"])
|
||||
|
||||
|
||||
def test_mostly_null_no_double_counts_validity():
|
||||
"""85% nulos: solo completeness penaliza; validity nativa sigue 1.0 (sin doble castigo)."""
|
||||
col = _clean_numeric_col()
|
||||
col["null_pct"] = 0.85
|
||||
col["flags"] = ["mostly_null"]
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] == 1.0 # ya no se multiplica por 0.5
|
||||
# score = 100*(0.6*0.15 + 0.4*1.0) = 49
|
||||
assert out["score"] == 49.0
|
||||
assert not any("mayoritariamente" in o for o in out["observations"])
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Robustez
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_empty_dict_does_not_crash():
|
||||
out = column_quality_score({})
|
||||
assert isinstance(out["score"], float)
|
||||
assert out["completeness"] == 1.0
|
||||
assert 0.0 <= out["score"] <= 100.0
|
||||
assert isinstance(out["issues"], list)
|
||||
|
||||
|
||||
def test_outliers_penalize_validity():
|
||||
col = _clean_numeric_col()
|
||||
col["numeric"] = {"outlier_pct": 0.2}
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] < 1.0
|
||||
assert any("outliers" in issue for issue in out["issues"])
|
||||
|
||||
|
||||
def test_mostly_null_flag_halves_validity():
|
||||
col = _clean_numeric_col()
|
||||
col["null_pct"] = 0.85
|
||||
col["flags"] = ["mostly_null"]
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] == 0.5
|
||||
assert any("mayoritariamente nula" in issue for issue in out["issues"])
|
||||
|
||||
|
||||
def test_high_cardinality_text_flagged_as_id():
|
||||
col = {
|
||||
"name": "uuid",
|
||||
"inferred_type": "text",
|
||||
"semantic_type": "",
|
||||
"null_pct": 0.0,
|
||||
"unique_pct": 0.99,
|
||||
"flags": [],
|
||||
"numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["consistency"] < 1.0
|
||||
assert any("alta cardinalidad" in issue for issue in out["issues"])
|
||||
assert isinstance(out["observations"], list)
|
||||
|
||||
|
||||
def test_none_values_treated_defensively():
|
||||
col = {
|
||||
"name": "x",
|
||||
"inferred_type": None,
|
||||
"semantic_type": None,
|
||||
"null_pct": None,
|
||||
"unique_pct": None,
|
||||
"flags": None,
|
||||
"numeric": None,
|
||||
"name": "x", "inferred_type": None, "semantic_type": None,
|
||||
"null_pct": None, "unique_pct": None, "flags": None, "numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["completeness"] == 1.0
|
||||
|
||||
@@ -0,0 +1,107 @@
|
||||
---
|
||||
name: detect_declared_keys_duckdb
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def detect_declared_keys_duckdb(db_path: str, table: str = None) -> dict"
|
||||
description: "Detecta las claves DECLARADAS (constraints reales) de un schema DuckDB leyendo la table function duckdb_constraints(): extrae PRIMARY KEY, FOREIGN KEY y UNIQUE (ignora NOT NULL y CHECK) y las devuelve normalizadas con sus columnas, y para las FK con su tabla y columnas referenciadas. Con table=None procesa todas las tablas; con table='X' filtra a PK/UNIQUE de X y a FK cuyo origen es X (case-sensitive). A diferencia de infer_fk_containment_duckdb (que INFIERE FKs candidatas por containment de valores cuando el schema no las declara), esta funcion devuelve las relaciones de clave REALES del schema. Estilo dict-no-throw: nunca lanza. Parte del grupo eda (relaciones de clave)."
|
||||
tags: [eda, duckdb, datascience, relations, primary-key, foreign-key, schema, exploratory-data-analysis]
|
||||
params:
|
||||
- name: db_path
|
||||
desc: "Ruta al archivo DuckDB. Debe existir (lectura read-only via duckdb_query_readonly; no se crea). Un path inexistente devuelve {status:'error', ...}."
|
||||
- name: table
|
||||
desc: "Si se pasa, filtra los resultados a esa tabla: incluye PRIMARY KEY y UNIQUE cuya tabla sea `table`, y FOREIGN KEY cuya tabla ORIGEN sea `table` (no la referenciada). None (default) devuelve los constraints de todas las tablas. La comparacion es case-sensitive (nombres tal cual los devuelve DuckDB)."
|
||||
output: "dict dict-no-throw. En exito {status:'ok', primary_keys:[{table:str, columns:[str,...]}, ...], foreign_keys:[{table:str, columns:[str,...], referenced_table:str, referenced_columns:[str,...]}, ...], unique:[{table:str, columns:[str,...]}, ...], tables:[str,...]} donde tables es la lista ordenada de tablas (origen) que poseen al menos un constraint PK/FK/UNIQUE emitido. Solo se emiten constraints de clave: NOT NULL y CHECK se ignoran. En error {status:'error', error:str}."
|
||||
uses_functions: [duckdb_query_readonly_py_infra]
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: []
|
||||
tested: true
|
||||
tests: ["test_golden_detecta_pks_y_fk", "test_golden_ignora_not_null_y_check", "test_edge_filtra_por_tabla_orders", "test_edge_filtra_por_tabla_customers", "test_edge_unique_declarado", "test_edge_sin_constraints_listas_vacias", "test_error_db_inexistente_no_lanza", "test_shape_resultado"]
|
||||
test_file_path: "python/functions/datascience/detect_declared_keys_duckdb_test.py"
|
||||
file_path: "python/functions/datascience/detect_declared_keys_duckdb.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os, duckdb
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience import detect_declared_keys_duckdb
|
||||
|
||||
# Base de ejemplo en /tmp: orders.customer_id -> customers.id (FK declarada)
|
||||
path = "/tmp/declared_keys_demo.duckdb"
|
||||
if os.path.exists(path):
|
||||
os.remove(path)
|
||||
con = duckdb.connect(path)
|
||||
con.execute("CREATE TABLE customers(id INTEGER PRIMARY KEY, name TEXT)")
|
||||
con.execute(
|
||||
"CREATE TABLE orders("
|
||||
" id INTEGER PRIMARY KEY,"
|
||||
" customer_id INTEGER REFERENCES customers(id),"
|
||||
" amt DOUBLE)"
|
||||
)
|
||||
con.close()
|
||||
|
||||
res = detect_declared_keys_duckdb(path)
|
||||
if res["status"] == "ok":
|
||||
for pk in res["primary_keys"]:
|
||||
print(f"PK {pk['table']}({', '.join(pk['columns'])})")
|
||||
for fk in res["foreign_keys"]:
|
||||
print(f"FK {fk['table']}({', '.join(fk['columns'])}) -> "
|
||||
f"{fk['referenced_table']}({', '.join(fk['referenced_columns'])})")
|
||||
# PK customers(id)
|
||||
# PK orders(id)
|
||||
# FK orders(customer_id) -> customers(id)
|
||||
else:
|
||||
print("error:", res["error"])
|
||||
|
||||
# Filtrar a una tabla concreta (PK/UNIQUE de orders + FK con origen orders):
|
||||
solo_orders = detect_declared_keys_duckdb(path, table="orders")
|
||||
print(solo_orders["tables"]) # ['orders']
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
- Cuando exploras un esquema DuckDB y quieres mostrar las relaciones de clave REALES (PK/FK/UNIQUE) que el schema ha declarado, sin inferir nada.
|
||||
- Como paso del capitulo RELACIONES del grupo `eda`: primero mira las claves declaradas con esta funcion; si el schema no declara FKs, complementa con `infer_fk_containment_duckdb` (inferencia por containment).
|
||||
- Antes de documentar o migrar un esquema, para listar el contrato de integridad referencial que el motor ya conoce.
|
||||
- Para validar que las constraints que esperas (esa FK que creaste con `REFERENCES`) realmente estan declaradas en la base materializada.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura**: lee de disco via la primitiva read-only `duckdb_query_readonly` (no crea ni modifica la base). El `db_path` debe existir; un path inexistente devuelve `{status:'error'}` (read_only NO crea la base).
|
||||
- **Requiere `duckdb_constraints()`**: usa la table function `duckdb_constraints()`, disponible en DuckDB modernos (verificado en 1.5.2). En versiones antiguas sin esa funcion, la query falla y se devuelve `{status:'error'}`.
|
||||
- **Solo claves DECLARADAS**: devuelve lo que el schema declaro con `PRIMARY KEY` / `FOREIGN KEY (... REFERENCES ...)` / `UNIQUE`. Una tabla materializada con `CREATE TABLE AS SELECT` NO lleva constraints — para esos casos no habra claves que mostrar y hay que INFERIRLAS (`infer_fk_containment_duckdb`).
|
||||
- **NOT NULL y CHECK se ignoran**: `duckdb_constraints()` tambien emite filas `NOT NULL` (DuckDB genera una por cada columna PK) y `CHECK`; esta funcion las descarta y solo conserva PK/FK/UNIQUE.
|
||||
- **Nombres case-sensitive**: el filtro `table='Orders'` no casa con una tabla `orders`. Se comparan los nombres tal cual los devuelve DuckDB.
|
||||
- **FK atribuida al origen**: una FOREIGN KEY se atribuye a su tabla ORIGEN (el `table` de la entrada), no a la referenciada. El filtro `table='X'` trae las FK cuyo origen es X, no las que apuntan a X.
|
||||
- **`tables` = tablas dueñas de constraints emitidos**: la lista `tables` contiene solo las tablas que poseen al menos un PK/FK/UNIQUE en el resultado (su campo `table`), ordenadas. No incluye tablas referenciadas que no tengan constraint propio en la salida.
|
||||
- **Columnas como listas**: `constraint_column_names` y `referenced_column_names` son columnas LIST de DuckDB; en 1.5.2 llegan como listas Python. La funcion las normaliza a listas de strings con una red de seguridad por si llegaran como string.
|
||||
|
||||
## Notas
|
||||
|
||||
`duckdb_constraints()` devuelve una fila por constraint con los campos
|
||||
`table_name`, `constraint_type`, `constraint_column_names`, `referenced_table`,
|
||||
`referenced_column_names`. Mapeo a la salida:
|
||||
|
||||
```text
|
||||
PRIMARY KEY -> primary_keys[]: {table, columns}
|
||||
UNIQUE -> unique[]: {table, columns}
|
||||
FOREIGN KEY -> foreign_keys[]: {table, columns, referenced_table, referenced_columns}
|
||||
NOT NULL -> ignorado
|
||||
CHECK -> ignorado
|
||||
```
|
||||
|
||||
Para una FK, `referenced_table` y `referenced_column_names` vienen poblados; para
|
||||
PK/UNIQUE, `referenced_table` es NULL y `referenced_column_names` una lista vacia.
|
||||
|
||||
Complementa a `infer_fk_containment_duckdb`: esta funcion devuelve las relaciones
|
||||
de clave REALES del schema (declaradas); la otra INFIERE FKs candidatas por
|
||||
containment de valores cuando el schema no las declaro. En el capitulo RELACIONES
|
||||
de AutomaticEDA se usan en orden: primero las declaradas, luego la inferencia como
|
||||
respaldo.
|
||||
@@ -0,0 +1,127 @@
|
||||
"""detect_declared_keys_duckdb — lee las claves DECLARADAS de un schema DuckDB.
|
||||
|
||||
Funcion impura: lee de disco a traves de la primitiva read-only del grupo
|
||||
`duckdb` (duckdb_query_readonly). Pertenece al grupo de capacidad `eda`
|
||||
(relaciones de clave): a diferencia de infer_fk_containment_duckdb, que INFIERE
|
||||
FOREIGN KEYs candidatas por containment de valores, esta funcion devuelve las
|
||||
constraints REALES que el schema ha declarado (PRIMARY KEY / FOREIGN KEY /
|
||||
UNIQUE) leyendo la table function `duckdb_constraints()`.
|
||||
|
||||
Es la pieza del capitulo RELACIONES de AutomaticEDA que muestra las relaciones de
|
||||
clave reales cuando existen — frente a la inferencia, que se usa cuando el schema
|
||||
no las declaro.
|
||||
|
||||
Estilo dict-no-throw del grupo duckdb: nunca lanza; captura cualquier error y
|
||||
devuelve {status:'error', error:str}.
|
||||
"""
|
||||
|
||||
from infra import duckdb_query_readonly
|
||||
|
||||
|
||||
def _as_list(value) -> list:
|
||||
"""Normaliza el valor de una columna LIST de DuckDB a una lista de strings.
|
||||
|
||||
En DuckDB 1.5.2, `constraint_column_names` y `referenced_column_names` llegan
|
||||
ya como listas Python a traves de duckdb_query_readonly. Este helper es solo
|
||||
una red de seguridad: si por cualquier motivo llegara como string (p.ej. la
|
||||
representacion `[id, customer_id]`), la parsea de forma defensiva.
|
||||
"""
|
||||
if value is None:
|
||||
return []
|
||||
if isinstance(value, (list, tuple)):
|
||||
return [str(v) for v in value]
|
||||
if isinstance(value, str):
|
||||
s = value.strip()
|
||||
if s.startswith("[") and s.endswith("]"):
|
||||
s = s[1:-1]
|
||||
if not s.strip():
|
||||
return []
|
||||
return [
|
||||
part.strip().strip("'\"")
|
||||
for part in s.split(",")
|
||||
if part.strip().strip("'\"")
|
||||
]
|
||||
return [str(value)]
|
||||
|
||||
|
||||
def detect_declared_keys_duckdb(db_path: str, table: str = None) -> dict:
|
||||
"""Detecta las claves PRIMARY KEY / FOREIGN KEY / UNIQUE declaradas en DuckDB.
|
||||
|
||||
Lee la table function `duckdb_constraints()` y extrae solo las constraints de
|
||||
clave (PRIMARY KEY, FOREIGN KEY, UNIQUE), ignorando NOT NULL y CHECK.
|
||||
|
||||
Args:
|
||||
db_path: ruta al archivo DuckDB. Debe existir (lectura read-only; no se
|
||||
crea). Un path inexistente devuelve {status:'error', ...} sin lanzar.
|
||||
table: si se pasa, filtra los resultados a esa tabla: incluye PRIMARY KEY
|
||||
y UNIQUE cuya tabla sea `table`, y FOREIGN KEY cuya tabla ORIGEN sea
|
||||
`table`. None (default) devuelve los constraints de todas las tablas.
|
||||
La comparacion de nombres es case-sensitive (tal cual los devuelve
|
||||
DuckDB).
|
||||
|
||||
Returns:
|
||||
dict dict-no-throw. En exito:
|
||||
{status:'ok',
|
||||
primary_keys:[{table:str, columns:[str, ...]}, ...],
|
||||
foreign_keys:[{table:str, columns:[str, ...],
|
||||
referenced_table:str,
|
||||
referenced_columns:[str, ...]}, ...],
|
||||
unique:[{table:str, columns:[str, ...]}, ...],
|
||||
tables:[str, ...]} # tablas (origen) con algun PK/FK/UNIQUE emitido
|
||||
En error (sin lanzar): {status:'error', error:str}.
|
||||
"""
|
||||
try:
|
||||
sql = (
|
||||
"SELECT table_name, constraint_type, constraint_column_names, "
|
||||
"referenced_table, referenced_column_names FROM duckdb_constraints()"
|
||||
)
|
||||
res = duckdb_query_readonly(db_path, sql)
|
||||
if res["status"] != "ok":
|
||||
return {"status": "error", "error": res["error"]}
|
||||
|
||||
primary_keys = []
|
||||
foreign_keys = []
|
||||
unique = []
|
||||
tables = set()
|
||||
|
||||
for row in res["rows"]:
|
||||
ctype = row["constraint_type"]
|
||||
tname = row["table_name"]
|
||||
|
||||
# Filtro por tabla origen: para PK/FK/UNIQUE el dueño del constraint es
|
||||
# `table_name`. Una FK se atribuye a su tabla origen (no a la
|
||||
# referenciada), igual que el filtro pide.
|
||||
if table is not None and tname != table:
|
||||
continue
|
||||
|
||||
cols = _as_list(row["constraint_column_names"])
|
||||
|
||||
if ctype == "PRIMARY KEY":
|
||||
primary_keys.append({"table": tname, "columns": cols})
|
||||
tables.add(tname)
|
||||
elif ctype == "UNIQUE":
|
||||
unique.append({"table": tname, "columns": cols})
|
||||
tables.add(tname)
|
||||
elif ctype == "FOREIGN KEY":
|
||||
foreign_keys.append(
|
||||
{
|
||||
"table": tname,
|
||||
"columns": cols,
|
||||
"referenced_table": row["referenced_table"],
|
||||
"referenced_columns": _as_list(
|
||||
row["referenced_column_names"]
|
||||
),
|
||||
}
|
||||
)
|
||||
tables.add(tname)
|
||||
# NOT NULL y CHECK se ignoran: no son relaciones de clave.
|
||||
|
||||
return {
|
||||
"status": "ok",
|
||||
"primary_keys": primary_keys,
|
||||
"foreign_keys": foreign_keys,
|
||||
"unique": unique,
|
||||
"tables": sorted(tables),
|
||||
}
|
||||
except Exception as e: # noqa: BLE001
|
||||
return {"status": "error", "error": str(e)}
|
||||
@@ -0,0 +1,167 @@
|
||||
"""Tests para detect_declared_keys_duckdb."""
|
||||
|
||||
import duckdb
|
||||
import pytest
|
||||
|
||||
from .detect_declared_keys_duckdb import detect_declared_keys_duckdb
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def db(tmp_path):
|
||||
"""DuckDB temporal con claves declaradas.
|
||||
|
||||
- customers(id PRIMARY KEY, name)
|
||||
- orders(id PRIMARY KEY, customer_id REFERENCES customers(id), amt)
|
||||
|
||||
Esto declara dos PRIMARY KEY (customers.id, orders.id) y una FOREIGN KEY
|
||||
(orders.customer_id -> customers.id). DuckDB ademas genera constraints
|
||||
NOT NULL para las columnas PK, que la funcion debe ignorar.
|
||||
"""
|
||||
path = str(tmp_path / "keys_test.duckdb")
|
||||
con = duckdb.connect(path)
|
||||
con.execute("CREATE TABLE customers(id INTEGER PRIMARY KEY, name TEXT)")
|
||||
con.execute(
|
||||
"CREATE TABLE orders("
|
||||
" id INTEGER PRIMARY KEY,"
|
||||
" customer_id INTEGER REFERENCES customers(id),"
|
||||
" amt DOUBLE"
|
||||
")"
|
||||
)
|
||||
con.close()
|
||||
return path
|
||||
|
||||
|
||||
def _pk_for(res, table):
|
||||
"""Devuelve la entrada primary_keys cuya tabla es `table`, o None."""
|
||||
for pk in res["primary_keys"]:
|
||||
if pk["table"] == table:
|
||||
return pk
|
||||
return None
|
||||
|
||||
|
||||
def test_golden_detecta_pks_y_fk(db):
|
||||
"""Golden: detecta las dos PK y la FK declaradas, con valores concretos."""
|
||||
res = detect_declared_keys_duckdb(db)
|
||||
assert res["status"] == "ok"
|
||||
|
||||
# PRIMARY KEY de customers y de orders.
|
||||
pk_customers = _pk_for(res, "customers")
|
||||
pk_orders = _pk_for(res, "orders")
|
||||
assert pk_customers is not None
|
||||
assert pk_customers["columns"] == ["id"]
|
||||
assert pk_orders is not None
|
||||
assert pk_orders["columns"] == ["id"]
|
||||
|
||||
# FOREIGN KEY orders.customer_id -> customers.id.
|
||||
assert len(res["foreign_keys"]) == 1
|
||||
fk = res["foreign_keys"][0]
|
||||
assert fk["table"] == "orders"
|
||||
assert fk["columns"] == ["customer_id"]
|
||||
assert fk["referenced_table"] == "customers"
|
||||
assert fk["referenced_columns"] == ["id"]
|
||||
|
||||
# tables incluye ambas (origen de algun constraint).
|
||||
assert res["tables"] == ["customers", "orders"]
|
||||
|
||||
|
||||
def test_golden_ignora_not_null_y_check(db):
|
||||
"""NOT NULL (auto-generado por las PK) no aparece como clave."""
|
||||
res = detect_declared_keys_duckdb(db)
|
||||
assert res["status"] == "ok"
|
||||
# Solo 2 PK reales (no las NOT NULL que DuckDB genera por cada columna PK).
|
||||
assert len(res["primary_keys"]) == 2
|
||||
# No hay UNIQUE declarado en este schema.
|
||||
assert res["unique"] == []
|
||||
|
||||
|
||||
def test_edge_filtra_por_tabla_orders(db):
|
||||
"""Edge table='orders': PK de orders + su FK; NO la PK de customers."""
|
||||
res = detect_declared_keys_duckdb(db, table="orders")
|
||||
assert res["status"] == "ok"
|
||||
|
||||
# Solo la PK de orders.
|
||||
assert len(res["primary_keys"]) == 1
|
||||
assert res["primary_keys"][0]["table"] == "orders"
|
||||
assert res["primary_keys"][0]["columns"] == ["id"]
|
||||
# La PK de customers NO esta.
|
||||
assert _pk_for(res, "customers") is None
|
||||
|
||||
# La FK de orders si esta (origen = orders).
|
||||
assert len(res["foreign_keys"]) == 1
|
||||
assert res["foreign_keys"][0]["table"] == "orders"
|
||||
assert res["foreign_keys"][0]["referenced_table"] == "customers"
|
||||
|
||||
# tables solo contiene orders (la dueña de los constraints emitidos).
|
||||
assert res["tables"] == ["orders"]
|
||||
|
||||
|
||||
def test_edge_filtra_por_tabla_customers(db):
|
||||
"""Edge table='customers': solo su PK; ninguna FK (orders queda fuera)."""
|
||||
res = detect_declared_keys_duckdb(db, table="customers")
|
||||
assert res["status"] == "ok"
|
||||
assert len(res["primary_keys"]) == 1
|
||||
assert res["primary_keys"][0]["table"] == "customers"
|
||||
assert res["foreign_keys"] == []
|
||||
assert res["tables"] == ["customers"]
|
||||
|
||||
|
||||
def test_edge_unique_declarado(tmp_path):
|
||||
"""Edge: una constraint UNIQUE declarada aparece en `unique`."""
|
||||
path = str(tmp_path / "unique_test.duckdb")
|
||||
con = duckdb.connect(path)
|
||||
con.execute("CREATE TABLE products(sku INTEGER UNIQUE, name TEXT)")
|
||||
con.close()
|
||||
|
||||
res = detect_declared_keys_duckdb(path)
|
||||
assert res["status"] == "ok"
|
||||
assert len(res["unique"]) == 1
|
||||
assert res["unique"][0]["table"] == "products"
|
||||
assert res["unique"][0]["columns"] == ["sku"]
|
||||
assert res["primary_keys"] == []
|
||||
assert res["foreign_keys"] == []
|
||||
assert res["tables"] == ["products"]
|
||||
|
||||
|
||||
def test_edge_sin_constraints_listas_vacias(tmp_path):
|
||||
"""Edge: tabla sin PK/FK/UNIQUE -> todas las listas vacias, status ok."""
|
||||
path = str(tmp_path / "no_keys.duckdb")
|
||||
con = duckdb.connect(path)
|
||||
con.execute("CREATE TABLE log(a INTEGER, b INTEGER)")
|
||||
con.close()
|
||||
|
||||
res = detect_declared_keys_duckdb(path)
|
||||
assert res["status"] == "ok"
|
||||
assert res["primary_keys"] == []
|
||||
assert res["foreign_keys"] == []
|
||||
assert res["unique"] == []
|
||||
assert res["tables"] == []
|
||||
|
||||
|
||||
def test_error_db_inexistente_no_lanza(tmp_path):
|
||||
"""Error: db_path inexistente -> status error, sin lanzar excepcion."""
|
||||
path = str(tmp_path / "does_not_exist.duckdb")
|
||||
res = detect_declared_keys_duckdb(path)
|
||||
assert res["status"] == "error"
|
||||
assert isinstance(res["error"], str)
|
||||
assert res["error"] != ""
|
||||
|
||||
|
||||
def test_shape_resultado(db):
|
||||
"""El retorno tiene exactamente las claves esperadas."""
|
||||
res = detect_declared_keys_duckdb(db)
|
||||
assert set(res.keys()) == {
|
||||
"status",
|
||||
"primary_keys",
|
||||
"foreign_keys",
|
||||
"unique",
|
||||
"tables",
|
||||
}
|
||||
for pk in res["primary_keys"]:
|
||||
assert set(pk.keys()) == {"table", "columns"}
|
||||
for fk in res["foreign_keys"]:
|
||||
assert set(fk.keys()) == {
|
||||
"table",
|
||||
"columns",
|
||||
"referenced_table",
|
||||
"referenced_columns",
|
||||
}
|
||||
@@ -0,0 +1,97 @@
|
||||
---
|
||||
name: extract_null_mask
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def extract_null_mask(query_fn, table: str, columns: list, max_rows: int = 5000) -> dict"
|
||||
description: "Extrae la mascara de nulos (1=falta / 0=presente) de una muestra de filas de una tabla, una lista 0/1 por columna alineada por fila, para alimentar el capitulo de calidad / patron de nulos de AutomaticEDA sin que el capitulo toque la base de datos. Recibe un lector read-only inyectado `query_fn(sql) -> dict` (mismo contrato que duckdb_query_readonly / pg_query / el `_q` de profile_table) y NO abre ninguna conexion por su cuenta. Construye UNA sola query que proyecta por cada columna `CASE WHEN \"col\" IS NULL THEN 1 ELSE 0 END` con identificadores escapados y LIMIT. Devuelve dict dict-no-throw: columns (efectivamente leidas, en orden), mask (lista int 0/1 por columna, misma longitud todas) y n. Una celda None se cuenta defensivamente como 1 (falta)."
|
||||
tags: [eda, nulls, missing, datascience, automatic-eda, extraction, read-only, duckdb, postgres, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: []
|
||||
params:
|
||||
- name: query_fn
|
||||
desc: "callable lector read-only del backend activo. Recibe un string SQL y devuelve un dict {'status':'ok','rows':[{col:val,...},...]} (mismo contrato que duckdb_query_readonly o el `_q` de profile_table). NO se abre ninguna conexion dentro de la funcion: toda la lectura pasa por query_fn. Si es None -> error."
|
||||
- name: table
|
||||
desc: "nombre de la tabla de la que muestrear la mascara de nulos. Se escapa con comillas dobles en la query. Vacio o None -> status error."
|
||||
- name: columns
|
||||
desc: "lista de nombres de columna a evaluar. Cada una produce una entrada en `mask` con una lista 0/1 paralela por fila (1=IS NULL, 0=presente). Cada nombre se escapa con comillas dobles. Vacia o None -> status error."
|
||||
- name: max_rows
|
||||
desc: "limite de filas a muestrear (clausula LIMIT). Default 5000. Protege frente a tablas enormes; con LIMIT obtienes el primer tramo, no un muestreo uniforme."
|
||||
output: "dict (nunca lanza). En exito: {'status':'ok','table':str,'columns':[str,...] (en orden),'mask':{col:[int 0/1,...],...} (1=falta/IS NULL, 0=presente; todas las listas con misma longitud = n),'n':int}. En error (sin lanzar): {'status':'error','error':str,'table':str,'columns':[],'mask':{},'n':0}. Errores: query_fn None, table vacia, columns vacia, o query_fn devuelve status!='ok' (se propaga su error)."
|
||||
tested: true
|
||||
tests: ["test_golden_mask_alineada", "test_celda_none_cuenta_como_falta", "test_columns_vacia_status_error", "test_query_fn_status_error_propaga", "test_query_fn_none_da_error_sin_reventar", "test_sql_contiene_case_y_limit"]
|
||||
test_file_path: "python/functions/datascience/extract_null_mask_test.py"
|
||||
file_path: "python/functions/datascience/extract_null_mask.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience.extract_null_mask import extract_null_mask
|
||||
from infra import duckdb_query_readonly
|
||||
|
||||
# El lector read-only se inyecta como closure (igual que el `_q` de profile_table).
|
||||
db = "data/clientes.duckdb"
|
||||
def _q(sql):
|
||||
return duckdb_query_readonly(db, sql)
|
||||
|
||||
res = extract_null_mask(_q, "clientes", ["email", "telefono", "edad"])
|
||||
# res == {
|
||||
# "status": "ok",
|
||||
# "table": "clientes",
|
||||
# "columns": ["email", "telefono", "edad"],
|
||||
# "mask": {
|
||||
# "email": [0, 0, 1, 0, ...], # fila 2 sin email
|
||||
# "telefono": [1, 0, 1, 0, ...],
|
||||
# "edad": [0, 0, 0, 1, ...],
|
||||
# },
|
||||
# "n": 5000,
|
||||
# }
|
||||
|
||||
# % de nulos por columna a partir de la muestra:
|
||||
pct = {c: 100 * sum(bits) / max(res["n"], 1) for c, bits in res["mask"].items()}
|
||||
|
||||
# Se entrega al capitulo de calidad sin que este toque la BD:
|
||||
ctx = {"null_mask": res}
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando el capitulo de calidad / patron de nulos de AutomaticEDA necesita saber
|
||||
DONDE faltan los valores (no solo cuantos) y NO debe abrir la base de datos por
|
||||
su cuenta: extraes aqui la mascara 0/1 por columna alineada por fila y se la pasas
|
||||
en `ctx['null_mask']`. Usala siempre que quieras detectar co-ocurrencia de nulos
|
||||
(filas que fallan en varias columnas a la vez), calcular el % de nulos sobre una
|
||||
muestra, o pintar un heatmap de missingness reutilizando un unico lector read-only
|
||||
inyectado, en vez de hacer N `COUNT(*) WHERE col IS NULL` por separado.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura**: lee de la base de datos a traves de `query_fn`. No abre conexiones
|
||||
por su cuenta — depende por completo del lector inyectado. Sigue el estilo
|
||||
dict-no-throw del grupo `eda`: nunca lanza; ante cualquier fallo devuelve
|
||||
`{"status":"error","error":...}` con `columns=[]`, `mask={}`, `n=0`.
|
||||
- **`error_type` en el frontmatter es `error_go_core` por convencion del registry**
|
||||
(toda funcion impura debe declararlo y el indexer lo exige), pero el codigo
|
||||
NO lanza esa excepcion: degrada al dict de error. Es metadata, no comportamiento.
|
||||
- **Muestra, no censo**: con `LIMIT max_rows` obtienes el primer tramo de filas que
|
||||
devuelva el backend, no un muestreo uniforme ni la tabla entera. El % de nulos
|
||||
derivado es una estimacion sobre esa muestra; para el conteo exacto usa un
|
||||
agregado `COUNT(*)`/`COUNT(col)` aparte.
|
||||
- **Alineacion por fila**: `mask[col][i]` corresponde a la misma fila `i` que
|
||||
`mask[otra_col][i]`. Todas las listas tienen longitud `n`, asi que puedes cruzar
|
||||
columnas por indice (co-ocurrencia de nulos) sin re-alinear.
|
||||
- **Defensa None -> 1**: el SQL ya devuelve 0/1, pero si una celda llega como `None`
|
||||
(CASE no aplicado, columna ausente en la fila, backend que nulifica) se cuenta
|
||||
como 1 (falta). Un valor inesperado no convertible a int se trata como presente (0).
|
||||
- **No loguear los datos crudos**: aunque `mask` es solo 0/1, los nombres de columna
|
||||
pueden revelar el esquema. En trazas usa `n` y el numero de columnas, no el dict
|
||||
completo.
|
||||
@@ -0,0 +1,101 @@
|
||||
"""extract_null_mask — extrae la mascara de nulos (1=falta / 0=presente) de una tabla.
|
||||
|
||||
Lector read-only inyectado: recibe `query_fn(sql) -> dict` con el mismo contrato
|
||||
que duckdb_query_readonly / pg_query (y que el `_q` de profile_table):
|
||||
`{"status": "ok", "rows": [{col: val, ...}, ...]}`. Esta funcion NO abre ninguna
|
||||
conexion por su cuenta — solo usa `query_fn`. Construye UNA sola query que, por
|
||||
cada columna pedida, evalua `CASE WHEN "col" IS NULL THEN 1 ELSE 0 END` y devuelve
|
||||
una muestra de filas con esos bits. El resultado es un dict `mask` con una lista
|
||||
0/1 por columna, alineada por fila (1 = el valor falta / IS NULL, 0 = presente),
|
||||
listo para alimentar el capitulo de calidad / patron de nulos de AutomaticEDA sin
|
||||
que el capitulo toque la base de datos.
|
||||
|
||||
Estilo dict-no-throw del grupo `eda`: nunca lanza; captura cualquier excepcion y
|
||||
degrada a `{"status": "error", "error": str, ...}`.
|
||||
"""
|
||||
|
||||
|
||||
def _to_bit(value):
|
||||
"""Coacciona el valor 0/1 del CASE a int de forma defensiva.
|
||||
|
||||
El SQL ya devuelve 0 (presente) o 1 (falta). Por si una celda llega como None
|
||||
(el CASE no se aplico o el backend la nulifico), se cuenta como 1 (falta). El
|
||||
resto se reduce a int: un entero distinto de 0 cuenta como 1 (falta), 0 como
|
||||
presente. Un valor no convertible se trata como presente (0) — nunca lanza.
|
||||
"""
|
||||
if value is None:
|
||||
return 1
|
||||
try:
|
||||
return 1 if int(value) != 0 else 0
|
||||
except (TypeError, ValueError):
|
||||
return 0
|
||||
|
||||
|
||||
def extract_null_mask(query_fn, table, columns, max_rows=5000):
|
||||
"""Extrae la mascara de nulos (1=falta / 0=presente) de una muestra de la tabla.
|
||||
|
||||
Args:
|
||||
query_fn: callable lector read-only del backend activo. Recibe un string
|
||||
SQL y devuelve un dict {"status": "ok", "rows": [{col: val, ...}]}
|
||||
(mismo contrato que duckdb_query_readonly / el `_q` de profile_table).
|
||||
No se abre ninguna conexion aqui: toda la lectura pasa por query_fn.
|
||||
table: nombre de la tabla. Se escapa con comillas dobles en la query.
|
||||
columns: lista de nombres de columna a evaluar. Cada una produce una
|
||||
entrada en `mask` con una lista 0/1 paralela por fila. Vacia o None ->
|
||||
status error.
|
||||
max_rows: limite de filas a muestrear (clausula LIMIT). Default 5000.
|
||||
|
||||
Returns:
|
||||
dict (nunca lanza):
|
||||
{
|
||||
"status": "ok" | "error",
|
||||
"error": str, # solo si status == "error"
|
||||
"table": str,
|
||||
"columns": [str, ...], # columnas efectivamente leidas, en orden
|
||||
"mask": {col: [int 0/1, ...], ...}, # alineada por fila, 1=falta, 0=presente
|
||||
"n": int # nº de filas muestreadas
|
||||
}
|
||||
Todas las listas de `mask` tienen la misma longitud (= n).
|
||||
"""
|
||||
base = {"status": "ok", "table": table, "columns": [], "mask": {}, "n": 0}
|
||||
try:
|
||||
if query_fn is None:
|
||||
return {**base, "status": "error", "error": "query_fn es None"}
|
||||
if not table:
|
||||
return {**base, "status": "error", "error": "table es obligatorio"}
|
||||
if not columns:
|
||||
return {**base, "status": "error", "error": "columns vacío"}
|
||||
|
||||
# Identificadores escapados con comillas dobles (como hace profile_table)
|
||||
# para tolerar nombres con mayusculas/espacios/palabras reservadas. Cada
|
||||
# columna se proyecta como su propio bit IS NULL conservando el alias.
|
||||
select_sql = ", ".join(
|
||||
f'(CASE WHEN "{c}" IS NULL THEN 1 ELSE 0 END) AS "{c}"' for c in columns
|
||||
)
|
||||
sql = f'SELECT {select_sql} FROM "{table}" LIMIT {int(max_rows)}'
|
||||
|
||||
q = query_fn(sql)
|
||||
if not isinstance(q, dict) or q.get("status") != "ok":
|
||||
err = (
|
||||
q.get("error", "query_fn fallo")
|
||||
if isinstance(q, dict)
|
||||
else "query_fn no devolvio un dict"
|
||||
)
|
||||
return {**base, "status": "error", "error": err}
|
||||
|
||||
rows = q.get("rows", []) or []
|
||||
mask = {c: [] for c in columns}
|
||||
for row in rows:
|
||||
for c in columns:
|
||||
# row.get tolera filas que no traigan la columna (None -> falta).
|
||||
mask[c].append(_to_bit(row.get(c) if isinstance(row, dict) else None))
|
||||
|
||||
return {
|
||||
"status": "ok",
|
||||
"table": table,
|
||||
"columns": list(columns),
|
||||
"mask": mask,
|
||||
"n": len(rows),
|
||||
}
|
||||
except Exception as e: # noqa: BLE001 - dict-no-throw: degradar, nunca lanzar
|
||||
return {**base, "status": "error", "error": str(e)}
|
||||
@@ -0,0 +1,116 @@
|
||||
"""Tests para extract_null_mask.
|
||||
|
||||
No usa DuckDB real: inyecta un query_fn FAKE (closure) que devuelve filas
|
||||
predefinidas (simulando el SELECT de bits 0/1) y, opcionalmente, captura el SQL
|
||||
recibido para verificar la query generada (CASE WHEN ... IS NULL + LIMIT). Asi el
|
||||
test es autocontenido y no depende de ningun backend.
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
sys.path.insert(0, os.path.dirname(__file__))
|
||||
|
||||
from extract_null_mask import extract_null_mask
|
||||
|
||||
|
||||
def _fake_query(rows, captured=None, status="ok", error=None):
|
||||
"""Crea un query_fn FAKE.
|
||||
|
||||
`captured` (lista opcional) recibe el SQL ejecutado para poder inspeccionarlo.
|
||||
`status`/`error` permiten simular un fallo del backend.
|
||||
"""
|
||||
|
||||
def _q(sql):
|
||||
if captured is not None:
|
||||
captured.append(sql)
|
||||
if status != "ok":
|
||||
return {"status": "error", "error": error or "boom"}
|
||||
return {"status": "ok", "rows": rows}
|
||||
|
||||
return _q
|
||||
|
||||
|
||||
def test_golden_mask_alineada():
|
||||
"""Golden: mask 0/1 por columna alineada por fila, n correcto, status ok."""
|
||||
# Cada fila simula el SELECT (CASE WHEN col IS NULL THEN 1 ELSE 0 END) AS col.
|
||||
rows = [
|
||||
{"email": 0, "telefono": 1, "edad": 0},
|
||||
{"email": 0, "telefono": 0, "edad": 1},
|
||||
{"email": 1, "telefono": 1, "edad": 0},
|
||||
]
|
||||
res = extract_null_mask(_fake_query(rows), "clientes", ["email", "telefono", "edad"])
|
||||
assert res["status"] == "ok"
|
||||
assert res["table"] == "clientes"
|
||||
assert res["columns"] == ["email", "telefono", "edad"]
|
||||
assert res["n"] == 3
|
||||
assert res["mask"]["email"] == [0, 0, 1]
|
||||
assert res["mask"]["telefono"] == [1, 0, 1]
|
||||
assert res["mask"]["edad"] == [0, 1, 0]
|
||||
# Todas las listas con la misma longitud.
|
||||
assert all(len(v) == res["n"] for v in res["mask"].values())
|
||||
|
||||
|
||||
def test_celda_none_cuenta_como_falta():
|
||||
"""Una celda None se cuenta defensivamente como 1 (falta)."""
|
||||
rows = [
|
||||
{"email": 0, "telefono": None},
|
||||
{"email": None, "telefono": 1},
|
||||
{"email": 1, "telefono": 0},
|
||||
]
|
||||
res = extract_null_mask(_fake_query(rows), "clientes", ["email", "telefono"])
|
||||
assert res["status"] == "ok"
|
||||
assert res["mask"]["email"] == [0, 1, 1]
|
||||
assert res["mask"]["telefono"] == [1, 1, 0]
|
||||
assert res["n"] == 3
|
||||
|
||||
|
||||
def test_columns_vacia_status_error():
|
||||
"""columns vacia -> status error con columns/mask/n vacios."""
|
||||
res = extract_null_mask(_fake_query([]), "clientes", [])
|
||||
assert res["status"] == "error"
|
||||
assert "columns" in res["error"]
|
||||
assert res["table"] == "clientes"
|
||||
assert res["columns"] == []
|
||||
assert res["mask"] == {}
|
||||
assert res["n"] == 0
|
||||
|
||||
|
||||
def test_query_fn_status_error_propaga():
|
||||
"""query_fn que devuelve status != ok -> se propaga como error, mask {}."""
|
||||
res = extract_null_mask(
|
||||
_fake_query([], status="error", error="db locked"),
|
||||
"clientes",
|
||||
["email"],
|
||||
)
|
||||
assert res["status"] == "error"
|
||||
assert "db locked" in res["error"]
|
||||
assert res["mask"] == {}
|
||||
assert res["n"] == 0
|
||||
|
||||
|
||||
def test_query_fn_none_da_error_sin_reventar():
|
||||
"""query_fn None -> error degradado, sin excepcion."""
|
||||
res = extract_null_mask(None, "clientes", ["email"])
|
||||
assert res["status"] == "error"
|
||||
assert res["columns"] == []
|
||||
assert res["mask"] == {}
|
||||
assert res["n"] == 0
|
||||
|
||||
|
||||
def test_sql_contiene_case_y_limit():
|
||||
"""La query genera un CASE WHEN IS NULL por columna escapada + LIMIT sobre la tabla."""
|
||||
captured = []
|
||||
rows = [{"email": 0}]
|
||||
extract_null_mask(
|
||||
_fake_query(rows, captured),
|
||||
"clientes_tbl",
|
||||
["email"],
|
||||
max_rows=123,
|
||||
)
|
||||
assert len(captured) == 1
|
||||
sql = captured[0]
|
||||
assert 'CASE WHEN "email" IS NULL THEN 1 ELSE 0 END' in sql
|
||||
assert 'AS "email"' in sql
|
||||
assert 'FROM "clientes_tbl"' in sql
|
||||
assert "LIMIT 123" in sql
|
||||
@@ -0,0 +1,103 @@
|
||||
---
|
||||
id: missingness_corr_heatmap_figure_py_datascience
|
||||
name: missingness_corr_heatmap_figure
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def missingness_corr_heatmap_figure(matrix, labels, title=\"Co-ocurrencia de ausencias\") -> \"matplotlib.figure.Figure\""
|
||||
description: "Construye una figura matplotlib (heatmap) de la matriz NxN de correlación de ausencias entre columnas: +1 = dos columnas suelen ser nulas a la vez, -1 = cuando una falta la otra está presente, 0 = ausencias independientes. Usa ax.imshow con coolwarm fijado a [-1,1], ticks con los labels truncados (X rotados 45º), colorbar y anota el valor de cada celda si N<=12. Devuelve un matplotlib.figure.Figure listo para rasterizar por el renderer del informe EDA (capítulo de datos faltantes). Backend Agg sin pyplot global; defensivo ante matrix/labels vacíos o celdas no numéricas (nunca lanza)."
|
||||
tags: [eda, missing, missingness, correlation, heatmap, matplotlib, figure, visualization, datascience, impure]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: [matplotlib]
|
||||
example: |
|
||||
from datascience.missingness_corr_heatmap_figure import missingness_corr_heatmap_figure
|
||||
matrix = [
|
||||
[1.0, 0.82, -0.10],
|
||||
[0.82, 1.0, 0.05],
|
||||
[-0.10, 0.05, 1.0],
|
||||
]
|
||||
labels = ["telefono", "movil", "email"]
|
||||
fig = missingness_corr_heatmap_figure(matrix, labels, title="Co-ocurrencia de ausencias")
|
||||
tested: true
|
||||
tests:
|
||||
- "test_returns_figure_with_axes"
|
||||
- "test_empty_matrix_does_not_raise_and_returns_figure"
|
||||
- "test_empty_labels_returns_message_figure"
|
||||
- "test_large_matrix_omits_annotations"
|
||||
- "test_ragged_and_non_numeric_cells_are_handled"
|
||||
test_file_path: "python/functions/datascience/missingness_corr_heatmap_figure_test.py"
|
||||
file_path: "python/functions/datascience/missingness_corr_heatmap_figure.py"
|
||||
params:
|
||||
- name: matrix
|
||||
desc: "Lista de listas (NxN) de floats en [-1,1]: la correlación de ausencias por pares de columnas. Puede venir vacía. Filas de longitud desigual se toleran (se rellenan/recortan a N); celdas None, NaN o no numéricas se coercen a 0.0. No se muta el original."
|
||||
- name: labels
|
||||
desc: "Lista de N nombres de columna, paralela a matrix. Puede venir vacía (devuelve figura \"sin columnas con ausencia variable\"). Se truncan a ~14 chars con elipsis para los ticks; los originales no se mutan."
|
||||
- name: title
|
||||
desc: "Título de la figura. Se trunca a ~60 chars con elipsis si es muy largo. Default \"Co-ocurrencia de ausencias\"."
|
||||
output: "Un matplotlib.figure.Figure (figsize 6.4x5.2, dpi 150) con un Axes heatmap (imshow vmin=-1, vmax=1, cmap coolwarm) más una colorbar etiquetada \"correlación de ausencias\". Ticks en ambos ejes con los labels truncados (X rotados 45º). Si N<=12 cada celda lleva su valor numérico anotado (texto blanco sobre celdas saturadas, oscuro sobre pálidas); con N grande se omiten las anotaciones para no saturar. Si matrix o labels vienen vacíos devuelve una Figure con texto centrado \"sin columnas con ausencia variable\"; cualquier error inesperado se captura y devuelve una Figure con el mensaje de error (nunca lanza). El caller rasteriza/cierra la figura; la función no la muestra ni la guarda."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.missingness_corr_heatmap_figure import missingness_corr_heatmap_figure
|
||||
|
||||
# Correlación de ausencias entre 3 columnas de contacto:
|
||||
# telefono y movil tienden a faltar juntos (0.82); email es casi independiente.
|
||||
matrix = [
|
||||
[1.00, 0.82, -0.10],
|
||||
[0.82, 1.00, 0.05],
|
||||
[-0.10, 0.05, 1.00],
|
||||
]
|
||||
labels = ["telefono", "movil", "email"]
|
||||
|
||||
fig = missingness_corr_heatmap_figure(
|
||||
matrix,
|
||||
labels,
|
||||
title="Co-ocurrencia de ausencias",
|
||||
)
|
||||
|
||||
# El renderer del informe lo rasteriza; aquí solo persistimos para inspección.
|
||||
fig.savefig("/tmp/missingness_heatmap.png")
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala en el capítulo de datos faltantes de un informe EDA cuando quieras ver de
|
||||
un vistazo qué columnas faltan juntas (mismo formulario sin rellenar, mismo
|
||||
proceso roto) frente a columnas cuyas ausencias son independientes. Pásale la
|
||||
matriz de correlación de ausencias (calculada sobre la máscara de nulos, p. ej.
|
||||
`df.isnull().corr()`) restringida a las columnas que de verdad tienen ausencia
|
||||
variable, junto con sus nombres. Es la pareja "estructura" del ranking de % de
|
||||
nulos: las barras dicen *cuánto* falta cada columna, este heatmap dice *si las
|
||||
ausencias están relacionadas* entre columnas.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura por matplotlib.** Toca la maquinaria de render. Usa el backend `Agg`
|
||||
y la API orientada a objetos `Figure`/`add_subplot` — NUNCA `pyplot.*` aquí,
|
||||
para no tocar el estado global ni filtrar figuras entre llamadas. `pyplot` NO
|
||||
es thread-safe; esta función evita ese riesgo construyendo el `Figure`
|
||||
directamente, así que es segura de llamar en bucle desde el renderer.
|
||||
- **El caller cierra la figura.** Devuelve el `Figure` pero no lo muestra ni lo
|
||||
guarda. Quien la consume debe rasterizarla y luego liberarla
|
||||
(`matplotlib.pyplot.close(fig)`) para no acumular memoria en lotes grandes.
|
||||
- **Escala de color fija en [-1, 1].** `vmin=-1`, `vmax=1` están fijados a
|
||||
propósito para que el color sea comparable entre informes y entre columnas. No
|
||||
se autoescala al rango real de la matriz; valores fuera de `[-1, 1]` se
|
||||
saturan al extremo del colormap.
|
||||
- **Anotaciones solo con N<=12.** Por encima de 12 columnas el grid de números
|
||||
se vuelve ilegible y se omite; queda solo el color + la colorbar. Filtra a las
|
||||
columnas con ausencia variable antes de llamar para no llegar a matrices
|
||||
enormes.
|
||||
- **Defensiva, nunca lanza.** `matrix=[]`, `labels=[]`, filas cortas, celdas
|
||||
`None`/`NaN`/no numéricas o cualquier error inesperado se manejan sin propagar:
|
||||
en el peor caso devuelve una `Figure` con "sin columnas con ausencia variable"
|
||||
o con el texto del error. No envuelvas la llamada en try/except por miedo a un
|
||||
raise — no lo hay.
|
||||
@@ -0,0 +1,158 @@
|
||||
"""Impure EDA helper: heatmap of missingness co-occurrence (`eda` group).
|
||||
|
||||
Builds a matplotlib heatmap of the pairwise missingness correlation matrix of a
|
||||
dataset: a value near ``+1`` means two columns tend to be null together, near
|
||||
``-1`` means when one is null the other tends to be present, and ``0`` means
|
||||
their absences are independent. Returns a ready-to-rasterize
|
||||
``matplotlib.figure.Figure``; it never shows nor saves it.
|
||||
|
||||
Impure because it touches matplotlib's rendering machinery. It uses the headless
|
||||
Agg backend and the object-oriented ``Figure`` API (no ``pyplot``) so it leaks no
|
||||
global state and is safe to call repeatedly from a report renderer.
|
||||
"""
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
# Muted gray for secondary text (no-data / fallback messages).
|
||||
_MUTED_TEXT = "#5f6b7a"
|
||||
# Soft red for the error fallback message (kept readable, not alarming).
|
||||
_ERROR_TEXT = "#b00020"
|
||||
|
||||
|
||||
def _truncate(text, width: int = 14) -> str:
|
||||
"""Truncate ``text`` to ``width`` chars, appending an ellipsis if cut."""
|
||||
s = "" if text is None else str(text)
|
||||
if len(s) <= width:
|
||||
return s
|
||||
if width <= 1:
|
||||
return s[:width]
|
||||
return s[: width - 1] + "…"
|
||||
|
||||
|
||||
def _message_figure(message: str, color: str = _MUTED_TEXT) -> "Figure":
|
||||
"""Return a fallback ``Figure`` carrying a single centered message."""
|
||||
fig = Figure(figsize=(6.4, 4.0), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
ax.axis("off")
|
||||
ax.text(
|
||||
0.5,
|
||||
0.5,
|
||||
message,
|
||||
ha="center",
|
||||
va="center",
|
||||
fontsize=12,
|
||||
color=color,
|
||||
wrap=True,
|
||||
transform=ax.transAxes,
|
||||
)
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
|
||||
|
||||
def missingness_corr_heatmap_figure(
|
||||
matrix,
|
||||
labels,
|
||||
title: str = "Co-ocurrencia de ausencias",
|
||||
) -> "matplotlib.figure.Figure":
|
||||
"""Build a heatmap figure of a missingness correlation matrix.
|
||||
|
||||
Renders an ``NxN`` matrix of missingness correlations in ``[-1, 1]`` with a
|
||||
diverging ``coolwarm`` colormap (fixed ``vmin=-1``, ``vmax=1`` so the color
|
||||
scale is comparable across reports). Both axes are tick-labelled with the
|
||||
column names (truncated to ~14 chars; the X labels rotated 45°). A colorbar
|
||||
is attached. When the matrix is small (``N <= 12``) each cell is annotated
|
||||
with its numeric value; for larger matrices the annotations are omitted to
|
||||
avoid an unreadable grid.
|
||||
|
||||
The function is fully defensive: empty/ragged/non-numeric input never raises.
|
||||
When there is nothing valid to draw it returns a ``Figure`` carrying a
|
||||
centered "sin columnas con ausencia variable" message, and any unexpected
|
||||
error is caught and turned into a fallback ``Figure`` carrying the error text.
|
||||
|
||||
Args:
|
||||
matrix: List of lists (``NxN``) of floats in ``[-1, 1]`` — the pairwise
|
||||
missingness correlation. May be empty; rows of unequal length are
|
||||
tolerated by treating the matrix as invalid only when it is empty or
|
||||
its label count does not match. Non-numeric/``None`` cells are
|
||||
coerced to ``0.0``.
|
||||
labels: List of ``N`` column names, parallel to ``matrix``. May be empty.
|
||||
Truncated for display; the originals are not mutated.
|
||||
title: Figure title. Default "Co-ocurrencia de ausencias".
|
||||
|
||||
Returns:
|
||||
A ``matplotlib.figure.Figure`` with a single heatmap Axes plus a
|
||||
colorbar. The caller is responsible for rasterizing/closing it.
|
||||
"""
|
||||
try:
|
||||
# --- Validate shape: need a non-empty square-ish matrix with labels.
|
||||
if (
|
||||
not isinstance(matrix, (list, tuple))
|
||||
or not isinstance(labels, (list, tuple))
|
||||
or len(matrix) == 0
|
||||
or len(labels) == 0
|
||||
):
|
||||
return _message_figure("sin columnas con ausencia variable")
|
||||
|
||||
n = len(labels)
|
||||
# Build a clean NxN grid: coerce each cell to float, default 0.0, pad/clip
|
||||
# rows so a ragged input never crashes imshow.
|
||||
grid = []
|
||||
for i in range(n):
|
||||
row_src = matrix[i] if i < len(matrix) else []
|
||||
if not isinstance(row_src, (list, tuple)):
|
||||
row_src = []
|
||||
row = []
|
||||
for j in range(n):
|
||||
cell = row_src[j] if j < len(row_src) else 0.0
|
||||
try:
|
||||
val = float(cell)
|
||||
except (TypeError, ValueError):
|
||||
val = 0.0
|
||||
if val != val: # NaN guard.
|
||||
val = 0.0
|
||||
row.append(val)
|
||||
grid.append(row)
|
||||
|
||||
fig = Figure(figsize=(6.4, 5.2), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
|
||||
im = ax.imshow(grid, vmin=-1, vmax=1, cmap="coolwarm", aspect="equal")
|
||||
|
||||
short = [_truncate(lab, 14) for lab in labels]
|
||||
ax.set_xticks(range(n))
|
||||
ax.set_yticks(range(n))
|
||||
ax.set_xticklabels(short, rotation=45, ha="right", fontsize=8)
|
||||
ax.set_yticklabels(short, fontsize=8)
|
||||
|
||||
# Annotate each cell only when the grid is small enough to stay legible.
|
||||
if n <= 12:
|
||||
for i in range(n):
|
||||
for j in range(n):
|
||||
val = grid[i][j]
|
||||
# White text over saturated (dark) cells, dark over pale.
|
||||
txt_color = "white" if abs(val) >= 0.55 else "#202020"
|
||||
ax.text(
|
||||
j,
|
||||
i,
|
||||
f"{val:.2f}",
|
||||
ha="center",
|
||||
va="center",
|
||||
fontsize=7,
|
||||
color=txt_color,
|
||||
)
|
||||
|
||||
cbar = fig.colorbar(im, ax=ax, fraction=0.046, pad=0.04)
|
||||
cbar.ax.tick_params(labelsize=8)
|
||||
cbar.set_label("correlación de ausencias", fontsize=8)
|
||||
|
||||
if title:
|
||||
ax.set_title(_truncate(title, 60), fontsize=12, loc="center", pad=10)
|
||||
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
except Exception as exc: # noqa: BLE001 — never raise from a figure builder.
|
||||
return _message_figure(f"error al dibujar heatmap: {exc}", color=_ERROR_TEXT)
|
||||
@@ -0,0 +1,62 @@
|
||||
"""Tests para missingness_corr_heatmap_figure (heatmap de ausencias, grupo eda).
|
||||
|
||||
Usa el backend Agg sin pyplot; no muestra ni guarda figuras. Cada test cierra
|
||||
explícitamente la Figure construida (matplotlib.pyplot.close) para no acumular
|
||||
estado entre tests.
|
||||
"""
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
import matplotlib.pyplot as plt # noqa: E402
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
from missingness_corr_heatmap_figure import missingness_corr_heatmap_figure
|
||||
|
||||
|
||||
def _identity_matrix(n):
|
||||
"""Matriz NxN con diagonal 1.0 y resto 0.0 (correlación de ausencias)."""
|
||||
return [[1.0 if i == j else 0.0 for j in range(n)] for i in range(n)]
|
||||
|
||||
|
||||
def test_returns_figure_with_axes():
|
||||
matrix = [[1.0, 0.3, -0.2], [0.3, 1.0, 0.5], [-0.2, 0.5, 1.0]]
|
||||
labels = ["edad", "ingresos", "ciudad"]
|
||||
fig = missingness_corr_heatmap_figure(matrix, labels, title="ausencias")
|
||||
assert isinstance(fig, Figure)
|
||||
# Heatmap (>=1 axes) + colorbar añade su propio Axes -> al menos 1.
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_empty_matrix_does_not_raise_and_returns_figure():
|
||||
fig = missingness_corr_heatmap_figure([], [], title="vacía")
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_empty_labels_returns_message_figure():
|
||||
fig = missingness_corr_heatmap_figure([[1.0]], [], title="sin labels")
|
||||
assert isinstance(fig, Figure)
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_large_matrix_omits_annotations():
|
||||
n = 16
|
||||
fig = missingness_corr_heatmap_figure(
|
||||
_identity_matrix(n), [f"col_{i}" for i in range(n)]
|
||||
)
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_ragged_and_non_numeric_cells_are_handled():
|
||||
# Fila corta + celda None + celda string -> se rellenan/coercen sin lanzar.
|
||||
matrix = [[1.0, None], ["x", 1.0, 0.5]]
|
||||
labels = ["a", "b"]
|
||||
fig = missingness_corr_heatmap_figure(matrix, labels)
|
||||
assert isinstance(fig, Figure)
|
||||
plt.close(fig)
|
||||
@@ -0,0 +1,68 @@
|
||||
---
|
||||
name: missingness_correlation
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def missingness_correlation(null_mask: dict, top_k: int = 20) -> dict"
|
||||
description: "Co-ocurrencia de ausencias: nucleo del capitulo de missingness del grupo eda. Recibe la mascara binaria de nulos de una tabla (1 = falta, 0 = presente, alineada por fila) y mide hasta que punto las columnas faltan juntas. Calcula la matriz de correlacion de Pearson entre los vectores binarios de ausencia de las columnas con varianza (al menos un 1 y un 0), mas las cifras de solapamiento de conjuntos por par (co-missing, either-missing, Jaccard). Excluye las columnas constantes en su ausencia (correlacion indefinida) y reporta cuantas. Compone la funcion atomica pearson del registry; no la reimplementa. Lectura defensiva; NUNCA lanza."
|
||||
tags: [eda, missingness, correlation, pearson, co-occurrence, jaccard, datascience]
|
||||
params:
|
||||
- name: null_mask
|
||||
desc: "dict {col: [int 0/1, ...]} con la mascara de ausencias de la tabla, alineada por fila: 1 = el valor falta en esa fila, 0 = presente. Todas las listas se asumen de la misma longitud (numero de filas). Valores truthy distintos de 0 se tratan como ausencia; entradas no-lista se ignoran sin romper."
|
||||
- name: top_k
|
||||
desc: "Numero maximo de pares a devolver en `pairs`, ordenados por valor absoluto de correlacion descendente. Default 20. Solo limita la lista de pares; la matriz cubre siempre todas las columnas con varianza."
|
||||
output: "dict con: columns (columnas con varianza en la ausencia, en orden de entrada); matrix (len(columns) x len(columns) de correlacion de Pearson entre las mascaras binarias, diagonal 1.0); pairs (hasta top_k pares i<j ordenados por |corr| desc, cada uno {a, b, corr, co_missing, either_missing, jaccard} donde co_missing = filas en que ambas faltan, either_missing = filas en que al menos una falta, jaccard = co_missing/either_missing o 0.0 si either_missing=0); n_excluded (nº de columnas con algun nulo pero sin varianza, constantes en la ausencia); excluded_cols (esas columnas en orden de entrada). Si hay <2 columnas con varianza, columns/matrix/pairs van vacios pero n_excluded/excluded_cols se rellenan. NUNCA lanza."
|
||||
uses_functions: [pearson_py_datascience]
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: []
|
||||
tested: true
|
||||
tests: ["test_co_ocurrencia_fuerte_corr_uno_jaccard_uno", "test_ausencias_disjuntas_corr_negativa_jaccard_cero", "test_columna_sin_varianza_se_excluye", "test_menos_de_dos_columnas_con_varianza_vacio_pero_cuenta_excluidas", "test_mask_vacio_todo_vacio", "test_top_k_limita_pares", "test_no_lanza_con_entradas_raras"]
|
||||
test_file_path: "python/functions/datascience/missingness_correlation_test.py"
|
||||
file_path: "python/functions/datascience/missingness_correlation.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience.missingness_correlation import missingness_correlation
|
||||
|
||||
# Mascara de ausencias de 6 filas. 1 = falta, 0 = presente.
|
||||
mask = {
|
||||
"ingresos": [1, 0, 1, 0, 1, 0], # falta junto a "deducciones"
|
||||
"deducciones": [1, 0, 1, 0, 1, 0], # mismas filas que "ingresos"
|
||||
"telefono": [0, 0, 0, 1, 0, 0], # casi siempre presente
|
||||
"verificado": [1, 1, 1, 1, 1, 1], # siempre ausente -> constante, excluida
|
||||
}
|
||||
out = missingness_correlation(mask, top_k=10)
|
||||
|
||||
print(out["columns"]) # ['ingresos', 'deducciones', 'telefono']
|
||||
print(out["n_excluded"]) # 1
|
||||
print(out["excluded_cols"]) # ['verificado']
|
||||
|
||||
# El par mas fuerte: ingresos y deducciones faltan siempre juntas.
|
||||
top = out["pairs"][0]
|
||||
print(top["a"], top["b"], round(top["corr"], 3)) # ingresos deducciones 1.0
|
||||
print(top["co_missing"], top["either_missing"], top["jaccard"]) # 3 3 1.0
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
- Usala en el capitulo de **missingness** de `AutomaticEDA` cuando ya tengas la mascara binaria de nulos por columna y quieras detectar **patrones de ausencia conjunta**: que columnas faltan siempre juntas (posible misma fuente/proceso roto) y cuales faltan de forma independiente.
|
||||
- Cuando necesites ordenar los pares de columnas por fuerza de co-ocurrencia (|corr|) para priorizar que bloques de ausencia investigar o imputar juntos.
|
||||
- Cuando quieras la cifra de solapamiento de conjuntos (Jaccard, co-missing) ademas de la correlacion lineal, para distinguir "faltan juntas" de "estan presentes juntas".
|
||||
- Antes de elegir una estrategia de imputacion: dos columnas con corr de ausencia ~1.0 no aportan informacion independiente sobre por que falta la otra.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Funcion pura, sin I/O y determinista. Lectura defensiva: entradas no-dict, columnas no-lista o vacias se ignoran sin lanzar.
|
||||
- Solo entran al calculo las columnas con **varianza en la ausencia** (al menos un 1 y al menos un 0). Una columna siempre-presente (todo 0) no aporta ausencia y **no** se cuenta como excluida; una columna siempre-ausente o constante con nulos (todo 1) tiene correlacion indefinida y se excluye, sumando a `n_excluded` / `excluded_cols`.
|
||||
- Con menos de 2 columnas con varianza, `columns`/`matrix`/`pairs` quedan vacios pero `n_excluded`/`excluded_cols` se rellenan igual — el caller debe contemplar el caso "sin pares".
|
||||
- La correlacion es la de Pearson sobre vectores binarios (equivale al coeficiente phi). El signo importa: corr negativa = las ausencias tienden a ser **complementarias** (cuando una falta, la otra suele estar presente).
|
||||
- Asume todas las listas alineadas por fila y de la misma longitud. Si vienen de longitudes distintas, `pearson` opera sobre el solapamiento que permita `zip` y degrada a 0.0 cuando no hay varianza efectiva; alinea la mascara antes de llamar.
|
||||
@@ -0,0 +1,120 @@
|
||||
"""Co-ocurrencia de ausencias: matriz de correlacion de Pearson entre mascaras de nulos.
|
||||
|
||||
Funcion pura del grupo eda, nucleo del capitulo de missingness. Recibe la mascara
|
||||
binaria de ausencias de una tabla (1 = falta, 0 = presente, alineada por fila) y
|
||||
mide hasta que punto las columnas faltan juntas. Para cada par de columnas con
|
||||
varianza en su ausencia calcula la correlacion de Pearson entre los vectores
|
||||
binarios, mas las cifras de solapamiento de conjuntos (co-missing, either-missing,
|
||||
Jaccard). Compone la funcion atomica `pearson` del registry; no reimplementa la
|
||||
correlacion. Lectura defensiva; NUNCA lanza.
|
||||
"""
|
||||
|
||||
from datascience import pearson
|
||||
|
||||
|
||||
def missingness_correlation(null_mask, top_k=20) -> dict:
|
||||
"""Correlacion de co-ocurrencia de ausencias entre columnas.
|
||||
|
||||
Args:
|
||||
null_mask: dict {col: [int 0/1, ...]} alineado por fila (1 = el valor
|
||||
falta en esa fila). Todas las listas se asumen de la misma longitud.
|
||||
top_k: numero maximo de pares a devolver, ordenados por |corr| desc.
|
||||
|
||||
Returns:
|
||||
dict con:
|
||||
- columns: columnas con varianza en la ausencia (al menos un 1 y al
|
||||
menos un 0), en orden de entrada.
|
||||
- matrix: matriz len(columns) x len(columns) de correlacion de Pearson
|
||||
entre las mascaras binarias, diagonal 1.0.
|
||||
- pairs: lista de hasta top_k pares (i<j) ordenados por |corr| desc.
|
||||
Cada par: {a, b, corr, co_missing, either_missing, jaccard}.
|
||||
- n_excluded: numero de columnas con algun nulo pero sin varianza
|
||||
(constantes en la ausencia: siempre presentes o siempre ausentes).
|
||||
- excluded_cols: lista de esas columnas (en orden de entrada).
|
||||
|
||||
Si hay menos de 2 columnas con varianza, columns/matrix/pairs van vacios
|
||||
pero n_excluded/excluded_cols se rellenan igualmente. NUNCA lanza.
|
||||
"""
|
||||
# Salida base, defensiva ante entradas no-dict.
|
||||
result = {
|
||||
"columns": [],
|
||||
"matrix": [],
|
||||
"pairs": [],
|
||||
"n_excluded": 0,
|
||||
"excluded_cols": [],
|
||||
}
|
||||
|
||||
if not isinstance(null_mask, dict) or not null_mask:
|
||||
return result
|
||||
|
||||
varying = [] # columnas con varianza en la ausencia
|
||||
varying_vecs = [] # sus vectores binarios saneados (floats 0.0/1.0)
|
||||
excluded_cols = [] # columnas con nulos pero sin varianza (constantes)
|
||||
|
||||
for col, raw in null_mask.items():
|
||||
if not isinstance(raw, (list, tuple)):
|
||||
continue
|
||||
# Sanea a 0/1: cualquier valor truthy distinto de 0 cuenta como ausencia.
|
||||
vec = [1 if bool(v) else 0 for v in raw]
|
||||
if not vec:
|
||||
continue
|
||||
ones = sum(vec)
|
||||
zeros = len(vec) - ones
|
||||
if ones > 0 and zeros > 0:
|
||||
varying.append(col)
|
||||
varying_vecs.append([float(v) for v in vec])
|
||||
elif ones > 0:
|
||||
# Tiene nulos pero todos (constante en la ausencia): sin varianza.
|
||||
excluded_cols.append(col)
|
||||
# ones == 0 -> columna siempre presente, sin nulos: no se cuenta como
|
||||
# excluida (no aporta ausencia al analisis de co-ocurrencia).
|
||||
|
||||
result["n_excluded"] = len(excluded_cols)
|
||||
result["excluded_cols"] = excluded_cols
|
||||
|
||||
n = len(varying)
|
||||
if n < 2:
|
||||
return result
|
||||
|
||||
result["columns"] = list(varying)
|
||||
|
||||
# Matriz de correlacion de Pearson, diagonal 1.0.
|
||||
matrix = [[0.0] * n for _ in range(n)]
|
||||
for i in range(n):
|
||||
matrix[i][i] = 1.0
|
||||
for i in range(n):
|
||||
for j in range(i + 1, n):
|
||||
r = pearson(varying_vecs[i], varying_vecs[j])
|
||||
matrix[i][j] = r
|
||||
matrix[j][i] = r
|
||||
result["matrix"] = matrix
|
||||
|
||||
# Pares con cifras de solapamiento de conjuntos.
|
||||
pairs = []
|
||||
for i in range(n):
|
||||
vi = varying_vecs[i]
|
||||
for j in range(i + 1, n):
|
||||
vj = varying_vecs[j]
|
||||
co_missing = 0
|
||||
either_missing = 0
|
||||
for a, b in zip(vi, vj):
|
||||
a_miss = a != 0.0
|
||||
b_miss = b != 0.0
|
||||
if a_miss and b_miss:
|
||||
co_missing += 1
|
||||
if a_miss or b_miss:
|
||||
either_missing += 1
|
||||
jaccard = co_missing / either_missing if either_missing > 0 else 0.0
|
||||
pairs.append({
|
||||
"a": varying[i],
|
||||
"b": varying[j],
|
||||
"corr": matrix[i][j],
|
||||
"co_missing": co_missing,
|
||||
"either_missing": either_missing,
|
||||
"jaccard": jaccard,
|
||||
})
|
||||
|
||||
pairs.sort(key=lambda p: abs(p["corr"]), reverse=True)
|
||||
result["pairs"] = pairs[:top_k] if top_k is not None and top_k >= 0 else pairs
|
||||
|
||||
return result
|
||||
@@ -0,0 +1,115 @@
|
||||
"""Tests para missingness_correlation."""
|
||||
|
||||
from datascience.missingness_correlation import missingness_correlation
|
||||
|
||||
|
||||
def test_co_ocurrencia_fuerte_corr_uno_jaccard_uno():
|
||||
# a y b faltan EXACTAMENTE en las mismas filas -> corr 1.0, jaccard 1.0.
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0, 1, 0],
|
||||
"b": [1, 0, 1, 0, 1, 0],
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == ["a", "b"]
|
||||
assert out["n_excluded"] == 0
|
||||
# Diagonal 1.0, off-diagonal ~1.0.
|
||||
assert out["matrix"][0][0] == 1.0
|
||||
assert out["matrix"][1][1] == 1.0
|
||||
assert abs(out["matrix"][0][1] - 1.0) < 1e-9
|
||||
assert len(out["pairs"]) == 1
|
||||
pair = out["pairs"][0]
|
||||
assert {pair["a"], pair["b"]} == {"a", "b"}
|
||||
assert abs(pair["corr"] - 1.0) < 1e-9
|
||||
assert pair["co_missing"] == 3 # filas 0,2,4
|
||||
assert pair["either_missing"] == 3 # mismas filas
|
||||
assert abs(pair["jaccard"] - 1.0) < 1e-9
|
||||
|
||||
|
||||
def test_ausencias_disjuntas_corr_negativa_jaccard_cero():
|
||||
# a y b nunca faltan en la misma fila -> co_missing 0, jaccard 0, corr <= 0.
|
||||
mask = {
|
||||
"a": [1, 1, 0, 0],
|
||||
"b": [0, 0, 1, 1],
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == ["a", "b"]
|
||||
pair = out["pairs"][0]
|
||||
assert pair["co_missing"] == 0
|
||||
assert pair["either_missing"] == 4
|
||||
assert pair["jaccard"] == 0.0
|
||||
# Solapamiento nulo + ausencias complementarias -> correlacion negativa.
|
||||
assert pair["corr"] < 0.0
|
||||
assert abs(pair["corr"] - out["matrix"][0][1]) < 1e-12
|
||||
|
||||
|
||||
def test_columna_sin_varianza_se_excluye():
|
||||
# c esta siempre presente (todo 0): no aporta ausencia -> no entra ni como
|
||||
# excluida. d esta siempre ausente (todo 1): tiene nulos pero sin varianza
|
||||
# -> excluida y n_excluded incrementa. a y b tienen varianza.
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0],
|
||||
"b": [1, 0, 0, 0],
|
||||
"c": [0, 0, 0, 0], # siempre presente
|
||||
"d": [1, 1, 1, 1], # siempre ausente, constante
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == ["a", "b"]
|
||||
assert "d" in out["excluded_cols"]
|
||||
assert "c" not in out["excluded_cols"]
|
||||
assert out["n_excluded"] == 1
|
||||
# Matriz solo de las columnas con varianza.
|
||||
assert len(out["matrix"]) == 2
|
||||
assert len(out["matrix"][0]) == 2
|
||||
|
||||
|
||||
def test_menos_de_dos_columnas_con_varianza_vacio_pero_cuenta_excluidas():
|
||||
# Solo una columna con varianza (a) + una constante-ausente (d).
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0],
|
||||
"d": [1, 1, 1, 1],
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == []
|
||||
assert out["matrix"] == []
|
||||
assert out["pairs"] == []
|
||||
assert out["n_excluded"] == 1
|
||||
assert out["excluded_cols"] == ["d"]
|
||||
|
||||
|
||||
def test_mask_vacio_todo_vacio():
|
||||
out = missingness_correlation({})
|
||||
assert out == {
|
||||
"columns": [],
|
||||
"matrix": [],
|
||||
"pairs": [],
|
||||
"n_excluded": 0,
|
||||
"excluded_cols": [],
|
||||
}
|
||||
|
||||
|
||||
def test_top_k_limita_pares():
|
||||
# 4 columnas con varianza -> 6 pares; top_k=2 deja 2.
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0, 0],
|
||||
"b": [1, 0, 0, 1, 0],
|
||||
"c": [0, 1, 1, 0, 1],
|
||||
"d": [1, 1, 0, 0, 1],
|
||||
}
|
||||
out = missingness_correlation(mask, top_k=2)
|
||||
assert len(out["columns"]) == 4
|
||||
assert len(out["pairs"]) == 2
|
||||
# Ordenados por |corr| desc.
|
||||
assert abs(out["pairs"][0]["corr"]) >= abs(out["pairs"][1]["corr"])
|
||||
|
||||
|
||||
def test_no_lanza_con_entradas_raras():
|
||||
# Valores no-lista y no-dict no deben romper.
|
||||
assert missingness_correlation(None)["columns"] == []
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0],
|
||||
"b": [1, 0, 1, 0],
|
||||
"bad": "not a list",
|
||||
"empty": [],
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == ["a", "b"]
|
||||
@@ -0,0 +1,99 @@
|
||||
---
|
||||
id: missingness_overview_py_datascience
|
||||
name: missingness_overview
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def missingness_overview(null_mask) -> dict"
|
||||
description: "Resumen de ausencias a nivel de dataset a partir de una máscara de nulos 0/1 por columna ({col: [1=falta, 0=presente]} alineada por fila). Calcula celdas y porcentaje de datos faltantes, cuántas columnas tienen algún nulo y cuántas filas son completas vs. incompletas. Estilo dict-no-throw del grupo eda: nunca lanza. Lectura defensiva — no-dict o dict vacío devuelve todo a 0; columnas no-lista se tratan como vacías; listas de longitud distinta se alinean a la longitud máxima rellenando la cola corta como presente (0); valores None/no-int cuentan como presente; sin ZeroDivisionError."
|
||||
tags: [eda, missing, missingness, nulls, profiling, datascience, pure]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: []
|
||||
example: |
|
||||
from datascience.missingness_overview import missingness_overview
|
||||
mask = {
|
||||
"a": [1, 0, 0, 0, 1],
|
||||
"b": [1, 0, 1, 0, 0],
|
||||
"c": [0, 0, 0, 0, 1],
|
||||
}
|
||||
missingness_overview(mask)
|
||||
# n_missing_cells=5, missing_cell_pct≈33.33, complete_rows=2, incomplete_rows=3
|
||||
tested: true
|
||||
tests:
|
||||
- "test_cooccurrence_three_cols_exact"
|
||||
- "test_empty_dict_all_zero"
|
||||
- "test_output_keys_contract"
|
||||
- "test_not_a_dict_returns_zero"
|
||||
- "test_no_nulls_all_complete"
|
||||
- "test_none_values_treated_as_present"
|
||||
- "test_unequal_lengths_pad_with_max"
|
||||
- "test_columns_present_but_no_rows"
|
||||
- "test_never_raises_on_garbage"
|
||||
test_file_path: "python/functions/datascience/missingness_overview_test.py"
|
||||
file_path: "python/functions/datascience/missingness_overview.py"
|
||||
params:
|
||||
- name: null_mask
|
||||
desc: "Dict {col_name: [int 0/1, ...]} con la máscara de nulos por columna, alineada por fila (1 = el valor falta, 0 = el valor está presente). Normalmente todas las listas tienen la misma longitud = nº de filas. Lectura defensiva: si no es dict o está vacío se devuelve todo a 0; columnas cuyo valor no es lista/tupla se tratan como vacías; listas de longitud distinta se alinean a la longitud máxima (las posiciones inexistentes de las columnas más cortas cuentan como presentes, 0); valores None o no enteros cuentan como presentes."
|
||||
output: "Dict con exactamente 9 claves, todas siempre presentes (la función nunca lanza): n_rows (longitud de fila = longitud máxima entre columnas, 0 si vacío), n_cols (nº de columnas), n_cols_with_null (columnas con >=1 falta), n_missing_cells (suma total de 1s), missing_cell_pct (0-100 = n_missing_cells / (n_rows*n_cols) * 100), complete_rows (filas sin ninguna falta), incomplete_rows (filas con >=1 falta), complete_pct (0-100), incomplete_pct (0-100). Los porcentajes son 0.0 cuando el denominador es 0 (sin ZeroDivisionError)."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.missingness_overview import missingness_overview
|
||||
|
||||
# Máscara de nulos por columna: 1 = falta, 0 = presente, alineada por fila.
|
||||
mask = {
|
||||
"a": [1, 0, 0, 0, 1],
|
||||
"b": [1, 0, 1, 0, 0],
|
||||
"c": [0, 0, 0, 0, 1],
|
||||
}
|
||||
|
||||
missingness_overview(mask)
|
||||
# {
|
||||
# "n_rows": 5,
|
||||
# "n_cols": 3,
|
||||
# "n_cols_with_null": 3, # a, b y c tienen al menos una falta
|
||||
# "n_missing_cells": 5, # 2 (a) + 2 (b) + 1 (c)
|
||||
# "missing_cell_pct": 33.33, # 5 / (5*3) * 100
|
||||
# "complete_rows": 2, # filas 1 y 3 sin ninguna falta
|
||||
# "incomplete_rows": 3, # filas 0 (a&b), 2 (b), 4 (a&c)
|
||||
# "complete_pct": 40.0, # 2 / 5 * 100
|
||||
# "incomplete_pct": 60.0, # 3 / 5 * 100
|
||||
# }
|
||||
|
||||
missingness_overview({})
|
||||
# Todo a 0: {"n_rows": 0, "n_cols": 0, "n_cols_with_null": 0,
|
||||
# "n_missing_cells": 0, "missing_cell_pct": 0.0,
|
||||
# "complete_rows": 0, "incomplete_rows": 0,
|
||||
# "complete_pct": 0.0, "incomplete_pct": 0.0}
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala al perfilar un dataset cuando ya tienes una máscara de nulos 0/1 por
|
||||
columna (p. ej. derivada del paso de carga/perfilado del EDA) y quieres la foto
|
||||
global de ausencias en una llamada: cuánta proporción de celdas falta, cuántas
|
||||
columnas están afectadas y, sobre todo, cuántas filas quedan completas vs.
|
||||
incompletas. Es el bloque resumen del capítulo de calidad/missingness de un EDA,
|
||||
y la base para decidir estrategias de imputación o de borrado de filas. Como es
|
||||
pura y dict-no-throw, puedes alimentarla con la máscara tal cual sin validarla
|
||||
antes: entradas malformadas degradan a ceros en vez de romper el pipeline.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **`n_rows` es la longitud máxima entre columnas.** Con listas de longitud
|
||||
desigual, las posiciones que faltan en las columnas más cortas se cuentan como
|
||||
presentes (`0`); no se descartan filas. En el caso normal (todas las listas de
|
||||
igual longitud) `n_rows` es simplemente esa longitud.
|
||||
- **Solo el valor exacto `1` cuenta como falta.** `None`, `0`, cadenas y
|
||||
cualquier otro valor se tratan como presentes. `True` (== 1) también cuenta
|
||||
como falta por la igualdad.
|
||||
- **Porcentajes en escala 0-100**, no fracciones. División por cero protegida:
|
||||
con `n_rows*n_cols == 0` los porcentajes salen `0.0`.
|
||||
@@ -0,0 +1,116 @@
|
||||
"""Pure EDA helper: dataset-level missingness overview from a 0/1 null mask.
|
||||
|
||||
Part of the `eda` capability group. Consumes a per-column null mask
|
||||
(``{col_name: [int 0/1, ...]}`` aligned by row, ``1`` = value is missing,
|
||||
``0`` = value is present) and derives dataset-wide missingness metrics: cell
|
||||
count and percentage of missing data, how many columns carry any null, and how
|
||||
many rows are complete vs. incomplete.
|
||||
|
||||
Dict-no-throw style of the `eda` group: it NEVER raises. A non-dict, an empty
|
||||
dict, malformed columns, ragged lists or non-int cell values all degrade
|
||||
gracefully to the zero/contract output. Stdlib only.
|
||||
|
||||
Ragged-length policy: columns are allowed to have different lengths. ``n_rows``
|
||||
is the **maximum** column length; positions that don't exist in a shorter
|
||||
column are treated as present (``0``). This keeps the ``n_rows * n_cols`` cell
|
||||
grid well defined without dropping rows.
|
||||
"""
|
||||
|
||||
|
||||
def _is_missing(value) -> int:
|
||||
"""Return ``1`` iff ``value`` denotes a missing cell, else ``0``.
|
||||
|
||||
Only an exact equality to ``1`` (covers ``int`` ``1`` and ``float`` ``1.0``)
|
||||
counts as missing. ``None``, ``0``, strings and any other value are treated
|
||||
as present. The comparison cannot raise for standard inputs.
|
||||
"""
|
||||
try:
|
||||
return 1 if value == 1 else 0
|
||||
except Exception:
|
||||
return 0
|
||||
|
||||
|
||||
def missingness_overview(null_mask) -> dict:
|
||||
"""Summarize dataset-level missingness from a 0/1 null mask.
|
||||
|
||||
Args:
|
||||
null_mask: Dict ``{col_name: [int 0/1, ...]}`` where each list is aligned
|
||||
by row (``1`` = missing, ``0`` = present). Lists are normally all the
|
||||
same length (= number of rows). Defensive: a non-dict or empty dict
|
||||
returns the all-zero contract; non-list columns are treated as empty;
|
||||
ragged lists are aligned to the maximum length, padding the missing
|
||||
tail of shorter columns as present (``0``); ``None`` / non-int cells
|
||||
count as present.
|
||||
|
||||
Returns:
|
||||
Dict with exactly these keys, all always present (the function never
|
||||
raises): ``n_rows``, ``n_cols``, ``n_cols_with_null``,
|
||||
``n_missing_cells``, ``missing_cell_pct`` (0-100), ``complete_rows``,
|
||||
``incomplete_rows``, ``complete_pct`` (0-100), ``incomplete_pct``
|
||||
(0-100). Percentages are ``0.0`` when the denominator is zero (no
|
||||
``ZeroDivisionError``).
|
||||
"""
|
||||
zero = {
|
||||
"n_rows": 0,
|
||||
"n_cols": 0,
|
||||
"n_cols_with_null": 0,
|
||||
"n_missing_cells": 0,
|
||||
"missing_cell_pct": 0.0,
|
||||
"complete_rows": 0,
|
||||
"incomplete_rows": 0,
|
||||
"complete_pct": 0.0,
|
||||
"incomplete_pct": 0.0,
|
||||
}
|
||||
|
||||
if not isinstance(null_mask, dict) or not null_mask:
|
||||
return dict(zero)
|
||||
|
||||
# Normalize every column to a list; non-list columns become empty.
|
||||
cols = {}
|
||||
for name, seq in null_mask.items():
|
||||
cols[name] = seq if isinstance(seq, (list, tuple)) else []
|
||||
|
||||
n_cols = len(cols)
|
||||
lengths = [len(seq) for seq in cols.values()]
|
||||
n_rows = max(lengths) if lengths else 0
|
||||
|
||||
if n_rows == 0:
|
||||
# Columns exist but carry no rows: everything zero except n_cols.
|
||||
out = dict(zero)
|
||||
out["n_cols"] = n_cols
|
||||
return out
|
||||
|
||||
n_missing_cells = 0
|
||||
n_cols_with_null = 0
|
||||
row_has_missing = [False] * n_rows
|
||||
|
||||
for seq in cols.values():
|
||||
col_len = len(seq)
|
||||
col_has_null = False
|
||||
for r in range(n_rows):
|
||||
if r < col_len and _is_missing(seq[r]):
|
||||
n_missing_cells += 1
|
||||
row_has_missing[r] = True
|
||||
col_has_null = True
|
||||
if col_has_null:
|
||||
n_cols_with_null += 1
|
||||
|
||||
incomplete_rows = sum(1 for flag in row_has_missing if flag)
|
||||
complete_rows = n_rows - incomplete_rows
|
||||
|
||||
total_cells = n_rows * n_cols
|
||||
missing_cell_pct = (n_missing_cells / total_cells * 100.0) if total_cells else 0.0
|
||||
complete_pct = complete_rows / n_rows * 100.0
|
||||
incomplete_pct = incomplete_rows / n_rows * 100.0
|
||||
|
||||
return {
|
||||
"n_rows": n_rows,
|
||||
"n_cols": n_cols,
|
||||
"n_cols_with_null": n_cols_with_null,
|
||||
"n_missing_cells": n_missing_cells,
|
||||
"missing_cell_pct": missing_cell_pct,
|
||||
"complete_rows": complete_rows,
|
||||
"incomplete_rows": incomplete_rows,
|
||||
"complete_pct": complete_pct,
|
||||
"incomplete_pct": incomplete_pct,
|
||||
}
|
||||
@@ -0,0 +1,146 @@
|
||||
"""Tests para missingness_overview."""
|
||||
|
||||
import sys
|
||||
import os
|
||||
|
||||
import pytest
|
||||
|
||||
sys.path.insert(0, os.path.dirname(__file__))
|
||||
|
||||
from missingness_overview import missingness_overview
|
||||
|
||||
|
||||
# Output contract: every call returns exactly these 9 keys.
|
||||
EXPECTED_KEYS = {
|
||||
"n_rows",
|
||||
"n_cols",
|
||||
"n_cols_with_null",
|
||||
"n_missing_cells",
|
||||
"missing_cell_pct",
|
||||
"complete_rows",
|
||||
"incomplete_rows",
|
||||
"complete_pct",
|
||||
"incomplete_pct",
|
||||
}
|
||||
|
||||
|
||||
def test_cooccurrence_three_cols_exact():
|
||||
# 3 columns, 5 rows. Hand-computed expectations:
|
||||
# col a missing at rows 0, 4 -> 2
|
||||
# col b missing at rows 0, 2 -> 2
|
||||
# col c missing at row 4 -> 1
|
||||
# n_missing_cells = 5, total_cells = 5*3 = 15 -> 33.333...%
|
||||
# row 0 (a&b co-occur) -> incomplete
|
||||
# row 1 (all present) -> complete
|
||||
# row 2 (b only) -> incomplete
|
||||
# row 3 (all present) -> complete
|
||||
# row 4 (a&c co-occur) -> incomplete
|
||||
mask = {
|
||||
"a": [1, 0, 0, 0, 1],
|
||||
"b": [1, 0, 1, 0, 0],
|
||||
"c": [0, 0, 0, 0, 1],
|
||||
}
|
||||
out = missingness_overview(mask)
|
||||
assert out["n_rows"] == 5
|
||||
assert out["n_cols"] == 3
|
||||
assert out["n_cols_with_null"] == 3
|
||||
assert out["n_missing_cells"] == 5
|
||||
assert out["missing_cell_pct"] == pytest.approx(33.33333333, abs=1e-6)
|
||||
assert out["complete_rows"] == 2
|
||||
assert out["incomplete_rows"] == 3
|
||||
assert out["complete_pct"] == pytest.approx(40.0)
|
||||
assert out["incomplete_pct"] == pytest.approx(60.0)
|
||||
|
||||
|
||||
def test_empty_dict_all_zero():
|
||||
out = missingness_overview({})
|
||||
assert out == {
|
||||
"n_rows": 0,
|
||||
"n_cols": 0,
|
||||
"n_cols_with_null": 0,
|
||||
"n_missing_cells": 0,
|
||||
"missing_cell_pct": 0.0,
|
||||
"complete_rows": 0,
|
||||
"incomplete_rows": 0,
|
||||
"complete_pct": 0.0,
|
||||
"incomplete_pct": 0.0,
|
||||
}
|
||||
|
||||
|
||||
def test_output_keys_contract():
|
||||
# The 9-key contract holds even for the garbage/zero path.
|
||||
assert set(missingness_overview({}).keys()) == EXPECTED_KEYS
|
||||
assert set(missingness_overview({"a": [1, 0]}).keys()) == EXPECTED_KEYS
|
||||
|
||||
|
||||
def test_not_a_dict_returns_zero():
|
||||
for bad in (None, [1, 0, 1], 42, "nope", 3.14):
|
||||
out = missingness_overview(bad)
|
||||
assert out["n_rows"] == 0
|
||||
assert out["n_cols"] == 0
|
||||
assert out["n_missing_cells"] == 0
|
||||
assert out["missing_cell_pct"] == 0.0
|
||||
|
||||
|
||||
def test_no_nulls_all_complete():
|
||||
mask = {"a": [0, 0, 0], "b": [0, 0, 0]}
|
||||
out = missingness_overview(mask)
|
||||
assert out["n_rows"] == 3
|
||||
assert out["n_cols"] == 2
|
||||
assert out["n_cols_with_null"] == 0
|
||||
assert out["n_missing_cells"] == 0
|
||||
assert out["missing_cell_pct"] == 0.0
|
||||
assert out["complete_rows"] == 3
|
||||
assert out["incomplete_rows"] == 0
|
||||
assert out["complete_pct"] == pytest.approx(100.0)
|
||||
assert out["incomplete_pct"] == pytest.approx(0.0)
|
||||
|
||||
|
||||
def test_none_values_treated_as_present():
|
||||
# None and other non-1 values count as present (0).
|
||||
mask = {"a": [None, 1, None, "x", 0]}
|
||||
out = missingness_overview(mask)
|
||||
assert out["n_rows"] == 5
|
||||
assert out["n_cols"] == 1
|
||||
assert out["n_missing_cells"] == 1 # only the explicit 1 at row 1
|
||||
assert out["n_cols_with_null"] == 1
|
||||
assert out["complete_rows"] == 4
|
||||
assert out["incomplete_rows"] == 1
|
||||
|
||||
|
||||
def test_unequal_lengths_pad_with_max():
|
||||
# Ragged lists: n_rows = max length; shorter column padded as present.
|
||||
# a = [1, 1] -> missing at rows 0, 1
|
||||
# b = [0] -> row 1 padded to present
|
||||
# n_rows = 2, n_cols = 2, total_cells = 4, n_missing_cells = 2 -> 50%
|
||||
mask = {"a": [1, 1], "b": [0]}
|
||||
out = missingness_overview(mask)
|
||||
assert out["n_rows"] == 2
|
||||
assert out["n_cols"] == 2
|
||||
assert out["n_cols_with_null"] == 1
|
||||
assert out["n_missing_cells"] == 2
|
||||
assert out["missing_cell_pct"] == pytest.approx(50.0)
|
||||
assert out["complete_rows"] == 0
|
||||
assert out["incomplete_rows"] == 2
|
||||
assert out["incomplete_pct"] == pytest.approx(100.0)
|
||||
|
||||
|
||||
def test_columns_present_but_no_rows():
|
||||
# Columns exist but all empty -> zero metrics, n_cols preserved.
|
||||
out = missingness_overview({"a": [], "b": []})
|
||||
assert out["n_rows"] == 0
|
||||
assert out["n_cols"] == 2
|
||||
assert out["n_missing_cells"] == 0
|
||||
assert out["missing_cell_pct"] == 0.0
|
||||
assert out["complete_pct"] == 0.0
|
||||
|
||||
|
||||
def test_never_raises_on_garbage():
|
||||
# Non-list column values, mixed junk -> must not raise.
|
||||
mask = {"a": "not a list", "b": 123, "c": [1, 0, 1]}
|
||||
out = missingness_overview(mask)
|
||||
assert set(out.keys()) == EXPECTED_KEYS
|
||||
assert out["n_rows"] == 3
|
||||
assert out["n_cols"] == 3
|
||||
assert out["n_missing_cells"] == 2 # only col c contributes
|
||||
assert out["n_cols_with_null"] == 1
|
||||
@@ -0,0 +1,93 @@
|
||||
---
|
||||
id: missingness_rank_bar_figure_py_datascience
|
||||
name: missingness_rank_bar_figure
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def missingness_rank_bar_figure(names, pcts, title=\"% de valores faltantes por columna\") -> \"matplotlib.figure.Figure\""
|
||||
description: "Construye una figura matplotlib de barras horizontales que ordena las columnas de un dataset por su porcentaje de valores faltantes (0-100), la mayor arriba, etiquetando cada barra con su NN.N% al final. Usa ax.barh, eje X fijo 0-100 y labels truncados a ~22 chars. Devuelve un matplotlib.figure.Figure listo para rasterizar por el renderer del informe EDA (capítulo de datos faltantes). Backend Agg sin pyplot global; defensivo ante listas vacías, longitudes desiguales o valores no numéricos (nunca lanza)."
|
||||
tags: [eda, missing, missingness, ranking, bar, barh, matplotlib, figure, visualization, datascience, impure]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: [matplotlib]
|
||||
example: |
|
||||
from datascience.missingness_rank_bar_figure import missingness_rank_bar_figure
|
||||
names = ["edad", "ingresos", "ciudad", "email"]
|
||||
pcts = [12.5, 40.0, 3.2, 0.0]
|
||||
fig = missingness_rank_bar_figure(names, pcts, title="% de valores faltantes por columna")
|
||||
tested: true
|
||||
tests:
|
||||
- "test_returns_figure_with_axes"
|
||||
- "test_sorted_descending_largest_on_top"
|
||||
- "test_empty_lists_do_not_raise_and_returns_figure"
|
||||
- "test_xlim_is_zero_to_hundred"
|
||||
- "test_length_mismatch_and_non_numeric_are_handled"
|
||||
test_file_path: "python/functions/datascience/missingness_rank_bar_figure_test.py"
|
||||
file_path: "python/functions/datascience/missingness_rank_bar_figure.py"
|
||||
params:
|
||||
- name: names
|
||||
desc: "Lista de nombres de columna. Puede venir vacía (devuelve figura \"sin datos faltantes\"). Los items se convierten a str y se truncan a ~22 chars con elipsis para las etiquetas del eje Y; los originales no se mutan."
|
||||
- name: pcts
|
||||
desc: "Lista paralela a names con el % de nulos en [0,100]. Valores None, NaN o no numéricos se coercen a 0.0 y los negativos se recortan a 0. Si len(names) != len(pcts) se recorta al menor de ambos para no romper."
|
||||
- name: title
|
||||
desc: "Título de la figura. Se trunca a ~60 chars con elipsis si es muy largo. Default \"% de valores faltantes por columna\"."
|
||||
output: "Un matplotlib.figure.Figure (figsize 6.4 x alto adaptativo según nº de barras, dpi 150) con un Axes de barras horizontales (ax.barh) ordenadas por % descendente, la mayor arriba. Eje X fijado a [0,100] con label \"% faltante\", etiquetas del eje Y truncadas a ~22 chars, y cada barra anotada con su NN.N% al final. Si names o pcts vienen vacíos devuelve una Figure con texto centrado \"sin datos faltantes\"; cualquier error inesperado se captura y devuelve una Figure con el mensaje de error (nunca lanza). El caller rasteriza/cierra la figura; la función no la muestra ni la guarda."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.missingness_rank_bar_figure import missingness_rank_bar_figure
|
||||
|
||||
# % de nulos por columna (p. ej. (df.isnull().mean() * 100).
|
||||
names = ["edad", "ingresos", "ciudad", "email"]
|
||||
pcts = [12.5, 40.0, 3.2, 0.0]
|
||||
|
||||
fig = missingness_rank_bar_figure(
|
||||
names,
|
||||
pcts,
|
||||
title="% de valores faltantes por columna",
|
||||
)
|
||||
|
||||
# ingresos (40.0%) queda arriba; email (0.0%) abajo.
|
||||
# El renderer del informe lo rasteriza; aquí solo persistimos para inspección.
|
||||
fig.savefig("/tmp/missingness_rank.png")
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala al abrir el capítulo de datos faltantes de un informe EDA para responder
|
||||
"¿qué columnas están más incompletas?" de un vistazo. Pásale los nombres de
|
||||
columna y el % de nulos de cada una (`(df.isnull().mean() * 100).round(1)`); la
|
||||
función se encarga de ordenar de mayor a menor y poner la peor arriba. Es la
|
||||
pareja "magnitud" del heatmap de co-ocurrencia: las barras dicen *cuánto* falta
|
||||
en cada columna, el heatmap dice *si esas ausencias están relacionadas* entre
|
||||
columnas.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura por matplotlib.** Toca la maquinaria de render. Usa el backend `Agg`
|
||||
y la API orientada a objetos `Figure`/`add_subplot` — NUNCA `pyplot.*` aquí,
|
||||
para no tocar el estado global ni filtrar figuras entre llamadas. `pyplot` NO
|
||||
es thread-safe; esta función evita ese riesgo construyendo el `Figure`
|
||||
directamente, así que es segura de llamar en bucle desde el renderer.
|
||||
- **El caller cierra la figura.** Devuelve el `Figure` pero no lo muestra ni lo
|
||||
guarda. Quien la consume debe rasterizarla y luego liberarla
|
||||
(`matplotlib.pyplot.close(fig)`) para no acumular memoria en lotes grandes.
|
||||
- **Espera porcentajes 0-100, no fracciones 0-1.** El eje X está fijado a
|
||||
`[0, 100]`. Si pasas fracciones (`0.4` en vez de `40.0`) las barras saldrán
|
||||
pegadas al origen. Multiplica por 100 antes de llamar.
|
||||
- **Alto adaptativo.** La altura de la figura crece con el número de barras
|
||||
(hasta un tope) para que reports con muchas columnas sigan legibles; aun así,
|
||||
conviene filtrar a las columnas con algún nulo antes de llamar para no listar
|
||||
decenas de barras a 0%.
|
||||
- **Defensiva, nunca lanza.** Listas vacías, longitudes desiguales, valores
|
||||
`None`/`NaN`/no numéricos o cualquier error inesperado se manejan sin propagar:
|
||||
en el peor caso devuelve una `Figure` con "sin datos faltantes" o con el texto
|
||||
del error. No envuelvas la llamada en try/except por miedo a un raise — no lo
|
||||
hay.
|
||||
@@ -0,0 +1,150 @@
|
||||
"""Impure EDA helper: ranked bar figure of missing-value share (`eda` group).
|
||||
|
||||
Builds a horizontal bar chart ranking the columns of a dataset by their
|
||||
percentage of missing values (0-100), largest at the top, each bar labelled with
|
||||
its ``NN.N%`` at the end. Returns a ready-to-rasterize
|
||||
``matplotlib.figure.Figure``; it never shows nor saves it.
|
||||
|
||||
Impure because it touches matplotlib's rendering machinery. It uses the headless
|
||||
Agg backend and the object-oriented ``Figure`` API (no ``pyplot``) so it leaks no
|
||||
global state and is safe to call repeatedly from a report renderer.
|
||||
"""
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
# Muted gray for secondary text (no-data / fallback messages).
|
||||
_MUTED_TEXT = "#5f6b7a"
|
||||
# Soft red for the error fallback message.
|
||||
_ERROR_TEXT = "#b00020"
|
||||
# Bar fill — a calm blue that reads well on white at report size.
|
||||
_BAR_COLOR = "#4C72B0"
|
||||
|
||||
|
||||
def _truncate(text, width: int = 22) -> str:
|
||||
"""Truncate ``text`` to ``width`` chars, appending an ellipsis if cut."""
|
||||
s = "" if text is None else str(text)
|
||||
if len(s) <= width:
|
||||
return s
|
||||
if width <= 1:
|
||||
return s[:width]
|
||||
return s[: width - 1] + "…"
|
||||
|
||||
|
||||
def _message_figure(message: str, color: str = _MUTED_TEXT) -> "Figure":
|
||||
"""Return a fallback ``Figure`` carrying a single centered message."""
|
||||
fig = Figure(figsize=(6.4, 4.0), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
ax.axis("off")
|
||||
ax.text(
|
||||
0.5,
|
||||
0.5,
|
||||
message,
|
||||
ha="center",
|
||||
va="center",
|
||||
fontsize=12,
|
||||
color=color,
|
||||
wrap=True,
|
||||
transform=ax.transAxes,
|
||||
)
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
|
||||
|
||||
def missingness_rank_bar_figure(
|
||||
names,
|
||||
pcts,
|
||||
title: str = "% de valores faltantes por columna",
|
||||
) -> "matplotlib.figure.Figure":
|
||||
"""Build a horizontal ranked bar figure of missing-value share per column.
|
||||
|
||||
Pairs each column name with its missing percentage, sorts by percentage
|
||||
descending and draws horizontal bars with the largest at the top. The X axis
|
||||
is pinned to ``[0, 100]`` so bars are comparable across reports, each bar is
|
||||
annotated with its ``NN.N%`` at the end, and the Y tick labels are truncated
|
||||
to ~22 chars.
|
||||
|
||||
The function is fully defensive: empty/mismatched/non-numeric input never
|
||||
raises. When there is nothing valid to draw it returns a ``Figure`` carrying
|
||||
a centered "sin datos faltantes" message, and any unexpected error is caught
|
||||
and turned into a fallback ``Figure`` carrying the error text.
|
||||
|
||||
Args:
|
||||
names: List of column names. May be empty. Items are stringified and
|
||||
truncated for display; the originals are not mutated.
|
||||
pcts: List parallel to ``names`` of missing-value percentages in
|
||||
``[0, 100]``. Non-numeric/``None`` values are coerced to ``0.0`` and
|
||||
negatives are clamped to ``0``. The list is truncated to
|
||||
``min(len(names), len(pcts))`` so a length mismatch never crashes.
|
||||
title: Figure title. Default "% de valores faltantes por columna".
|
||||
|
||||
Returns:
|
||||
A ``matplotlib.figure.Figure`` with a single horizontal-bar Axes. The
|
||||
caller is responsible for rasterizing/closing it.
|
||||
"""
|
||||
try:
|
||||
if (
|
||||
not isinstance(names, (list, tuple))
|
||||
or not isinstance(pcts, (list, tuple))
|
||||
or len(names) == 0
|
||||
or len(pcts) == 0
|
||||
):
|
||||
return _message_figure("sin datos faltantes")
|
||||
|
||||
# --- Pair names with coerced percentages, tolerating length mismatch.
|
||||
pairs = []
|
||||
for name, pct in zip(names, pcts):
|
||||
try:
|
||||
val = float(pct)
|
||||
except (TypeError, ValueError):
|
||||
val = 0.0
|
||||
if val != val: # NaN guard.
|
||||
val = 0.0
|
||||
val = max(0.0, val)
|
||||
pairs.append((name, val))
|
||||
|
||||
if not pairs:
|
||||
return _message_figure("sin datos faltantes")
|
||||
|
||||
# Sort by percentage descending; barh draws bottom-up, so the largest
|
||||
# ends at the top when we reverse the order before plotting.
|
||||
pairs.sort(key=lambda p: p[1], reverse=True)
|
||||
ordered = list(reversed(pairs)) # smallest first -> largest on top.
|
||||
|
||||
labels = [_truncate(name, 22) for name, _ in ordered]
|
||||
values = [val for _, val in ordered]
|
||||
y_pos = range(len(ordered))
|
||||
|
||||
# Height scales with the number of bars so dense reports stay readable.
|
||||
height = max(2.4, min(0.4 * len(ordered) + 1.2, 14.0))
|
||||
fig = Figure(figsize=(6.4, height), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
|
||||
ax.barh(list(y_pos), values, color=_BAR_COLOR, edgecolor="white")
|
||||
ax.set_yticks(list(y_pos))
|
||||
ax.set_yticklabels(labels, fontsize=8)
|
||||
ax.set_xlim(0, 100)
|
||||
ax.set_xlabel("% faltante", fontsize=9)
|
||||
|
||||
# Annotate each bar with its percentage at the end of the bar.
|
||||
for y, val in zip(y_pos, values):
|
||||
ax.text(
|
||||
min(val + 1.5, 99.0),
|
||||
y,
|
||||
f"{val:.1f}%",
|
||||
va="center",
|
||||
ha="left" if val < 90 else "right",
|
||||
fontsize=7,
|
||||
color="#202020",
|
||||
)
|
||||
|
||||
if title:
|
||||
ax.set_title(_truncate(title, 60), fontsize=12, loc="left", pad=10)
|
||||
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
except Exception as exc: # noqa: BLE001 — never raise from a figure builder.
|
||||
return _message_figure(f"error al dibujar barras: {exc}", color=_ERROR_TEXT)
|
||||
@@ -0,0 +1,64 @@
|
||||
"""Tests para missingness_rank_bar_figure (barras de % faltante, grupo eda).
|
||||
|
||||
Usa el backend Agg sin pyplot; no muestra ni guarda figuras. Cada test cierra
|
||||
explícitamente la Figure construida (matplotlib.pyplot.close) para no acumular
|
||||
estado entre tests.
|
||||
"""
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
import matplotlib.pyplot as plt # noqa: E402
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
from missingness_rank_bar_figure import missingness_rank_bar_figure
|
||||
|
||||
|
||||
def test_returns_figure_with_axes():
|
||||
names = ["edad", "ingresos", "ciudad"]
|
||||
pcts = [12.5, 40.0, 3.2]
|
||||
fig = missingness_rank_bar_figure(names, pcts, title="faltantes")
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_sorted_descending_largest_on_top():
|
||||
names = ["a", "b", "c"]
|
||||
pcts = [10.0, 50.0, 25.0]
|
||||
fig = missingness_rank_bar_figure(names, pcts)
|
||||
ax = fig.axes[0]
|
||||
# barh dibuja de abajo arriba; la mayor (50, "b") debe quedar arriba (mayor y).
|
||||
bars = ax.patches
|
||||
# El último parche (mayor índice y) corresponde a la barra superior.
|
||||
widths = [b.get_width() for b in bars]
|
||||
assert max(widths) == 50.0
|
||||
# La barra con la mayor anchura es la de mayor coordenada y (arriba).
|
||||
top_bar = max(bars, key=lambda b: b.get_y())
|
||||
assert top_bar.get_width() == 50.0
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_empty_lists_do_not_raise_and_returns_figure():
|
||||
fig = missingness_rank_bar_figure([], [], title="vacía")
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_xlim_is_zero_to_hundred():
|
||||
fig = missingness_rank_bar_figure(["a"], [42.0])
|
||||
ax = fig.axes[0]
|
||||
assert ax.get_xlim() == (0.0, 100.0)
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_length_mismatch_and_non_numeric_are_handled():
|
||||
# Más names que pcts + un pct None -> zip recorta y None se coacciona a 0.
|
||||
names = ["a", "b", "c"]
|
||||
pcts = [None, 30.0]
|
||||
fig = missingness_rank_bar_figure(names, pcts)
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
@@ -0,0 +1,65 @@
|
||||
---
|
||||
name: missingness_row_patterns
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def missingness_row_patterns(null_mask, top_n=10) -> dict"
|
||||
description: "Agrupa las filas de un dataset por su patron de ausencias (estilo matriz de missingno): para cada fila, el patron es la tupla ORDENADA de columnas que faltan en esa fila (las que tienen 1 en el null_mask). Cuenta la frecuencia de cada patron distinto, incluido el patron vacio (fila completa). Devuelve el top_n por frecuencia con su pct sobre el total. Pura, lectura defensiva, NUNCA lanza; {} -> n_rows 0."
|
||||
tags: [eda, missingness, missingno, patterns, profiling, datascience, data-quality]
|
||||
params:
|
||||
- name: null_mask
|
||||
desc: "Dict {col: [0/1, ...]} alineado por fila, donde 1 = la celda falta en esa fila y 0 = presente. Todas las columnas deberian tener la misma longitud (una entrada por fila); si difieren, n_rows es la lista mas larga y las celdas fuera de rango cuentan como presentes. Las claves se ordenan por str(col) para canonizar el patron. {} (o no-dict) -> n_rows 0."
|
||||
- name: top_n
|
||||
desc: "Maximo de patrones devueltos en `patterns`, rankeados por n_rows desc (desempate: menos columnas primero, luego nombres de columna). El recuento total de patrones distintos siempre se reporta en `n_patterns`, no se trunca. Default 10. Valores negativos -> 0; no-int -> 10."
|
||||
output: "Dict {n_rows: int (filas totales), n_patterns: int (patrones distintos, incluye el patron vacio = fila completa), complete_rows: int (filas con patron vacio, nada falta), patterns: lista del top_n ordenada por n_rows desc con [{missing_cols: [col,...] (vacio = fila completa), n_rows: int, pct: float 0-100 sobre n_rows total, redondeado a 2 decimales}]}. Para {} devuelve n_rows 0 y patterns []. NUNCA lanza."
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: []
|
||||
tested: true
|
||||
tests: ["test_patron_dominante_completas_singleton", "test_mask_vacio", "test_top_n_trunca_pero_cuenta_todos"]
|
||||
test_file_path: "python/functions/datascience/missingness_row_patterns_test.py"
|
||||
file_path: "python/functions/datascience/missingness_row_patterns.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience.missingness_row_patterns import missingness_row_patterns
|
||||
|
||||
# null_mask alineado por fila: 1 = la celda falta en esa fila.
|
||||
null_mask = {
|
||||
"A": [1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
|
||||
"B": [1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
|
||||
"C": [0, 0, 0, 0, 0, 0, 0, 0, 0, 1],
|
||||
}
|
||||
out = missingness_row_patterns(null_mask, top_n=10)
|
||||
print(out["n_rows"], out["n_patterns"], out["complete_rows"]) # 10 3 5
|
||||
for p in out["patterns"]:
|
||||
label = p["missing_cols"] or "(fila completa)"
|
||||
print(label, p["n_rows"], p["pct"])
|
||||
# (fila completa) 5 50.0
|
||||
# ['A', 'B'] 4 40.0
|
||||
# ['C'] 1 10.0
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
- Usala en el capitulo de calidad/ausencias de `AutomaticEDA` para mostrar la "matriz de patrones de missingno": en vez de pintar celda a celda, resume que combinaciones de columnas se quedan en blanco juntas y con que frecuencia.
|
||||
- Cuando ya tengas el null_mask por columna (1=falta) y quieras detectar co-ausencia estructural ("A y B siempre faltan juntas") antes de decidir una imputacion o un drop conjunto de columnas.
|
||||
- Cuando necesites una tabla compacta "patron -> nº filas -> pct" para un report o un grafico de barras de los patrones de ausencia mas comunes, separando ademas cuantas filas estan completas (`complete_rows`).
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Funcion pura, sin I/O y determinista. Lectura defensiva: `{}` o un no-dict devuelven `n_rows` 0 con `patterns` []. NUNCA lanza.
|
||||
- El patron vacio (fila completa, `missing_cols=[]`) SI cuenta como patron: aparece en `n_patterns` y puede aparecer en `patterns`. El consumidor lo etiqueta como "(fila completa)".
|
||||
- `pct` es sobre `n_rows` total (0-100), redondeado a 2 decimales. La suma de los `pct` de TODOS los patrones es 100; si `top_n` trunca, los `pct` mostrados sumaran menos.
|
||||
- Las columnas se ordenan por `str(col)` para canonizar cada patron, asi `{A,B}` y `{B,A}` colapsan al mismo patron `["A", "B"]`.
|
||||
- Una celda cuenta como ausente solo si vale 1 (`int(cell) == 1`); 0, None y valores no numericos se tratan como presentes.
|
||||
- Si las listas de columnas tienen longitudes distintas, `n_rows` es la mas larga y las posiciones fuera de rango de una columna corta cuentan como presentes (0).
|
||||
@@ -0,0 +1,107 @@
|
||||
"""missingness_row_patterns — distinct per-row missingness patterns (missingno matrix style).
|
||||
|
||||
Pure function: no I/O, deterministic, NEVER raises. Given a per-column null mask
|
||||
aligned by row ({col: [0/1, ...]}, 1 = missing), it groups rows by their missing
|
||||
"pattern" — the sorted tuple of column names that are missing in that row — and
|
||||
counts how often each distinct pattern occurs.
|
||||
|
||||
This mirrors the missingno matrix idea: instead of plotting per-cell nullity, it
|
||||
collapses each row to the SET of columns it lacks, surfacing co-missing structure
|
||||
(e.g. "A and B always go missing together"). The empty pattern (a fully complete
|
||||
row) is a first-class pattern and may appear in the result with missing_cols=[];
|
||||
the caller labels it "(fila completa)".
|
||||
"""
|
||||
|
||||
|
||||
def _is_missing(cell) -> bool:
|
||||
"""A cell counts as missing when it equals 1 (truthy 0/1 mask).
|
||||
|
||||
None / 0 / non-numeric are treated as present. Defensive: never raises.
|
||||
"""
|
||||
try:
|
||||
return int(cell) == 1
|
||||
except (TypeError, ValueError):
|
||||
return bool(cell)
|
||||
|
||||
|
||||
def missingness_row_patterns(null_mask, top_n=10) -> dict:
|
||||
"""Count distinct per-row missingness patterns from a column null mask.
|
||||
|
||||
For each row, its pattern is the sorted tuple of column names missing in that
|
||||
row (the columns whose value is 1). The frequency of each distinct pattern is
|
||||
counted, including the empty pattern (a complete row with nothing missing).
|
||||
|
||||
Args:
|
||||
null_mask: Dict {col: [0/1, ...]} aligned by row, where 1 means the cell
|
||||
is missing in that row. Read defensively; columns with differing
|
||||
lengths are tolerated (n_rows is the longest list; out-of-range cells
|
||||
count as present). Empty dict -> n_rows 0.
|
||||
top_n: Maximum number of patterns returned in `patterns`, ranked by
|
||||
n_rows desc (tiebreak: fewer columns first, then column names). The
|
||||
full count of distinct patterns is always reported in `n_patterns`.
|
||||
|
||||
Returns:
|
||||
Dict:
|
||||
{
|
||||
"n_rows": int, # total rows
|
||||
"n_patterns": int, # distinct patterns (incl. the empty pattern)
|
||||
"complete_rows": int, # rows with the empty pattern (nothing missing)
|
||||
"patterns": [ # top_n patterns, n_rows desc
|
||||
{"missing_cols": [col, ...], "n_rows": int, "pct": float} # [] = complete row
|
||||
],
|
||||
}
|
||||
For {} (or a non-dict) returns n_rows 0 and patterns []. NEVER raises.
|
||||
"""
|
||||
empty = {"n_rows": 0, "n_patterns": 0, "complete_rows": 0, "patterns": []}
|
||||
if not isinstance(null_mask, dict) or not null_mask:
|
||||
return empty
|
||||
|
||||
# Stable, canonical column order so each row's pattern tuple is sorted.
|
||||
items = sorted(null_mask.items(), key=lambda kv: str(kv[0]))
|
||||
names = [str(k) for k, _ in items]
|
||||
lists = [v if isinstance(v, (list, tuple)) else [] for _, v in items]
|
||||
|
||||
n_rows = max((len(lst) for lst in lists), default=0)
|
||||
if n_rows == 0:
|
||||
return empty
|
||||
|
||||
# Defensive parsing of top_n.
|
||||
try:
|
||||
limit = int(top_n)
|
||||
except (TypeError, ValueError):
|
||||
limit = 10
|
||||
if limit < 0:
|
||||
limit = 0
|
||||
|
||||
counts: dict = {}
|
||||
n_cols = len(names)
|
||||
for r in range(n_rows):
|
||||
# names is sorted, so iterating in order yields an already-sorted tuple.
|
||||
pattern = tuple(
|
||||
names[c]
|
||||
for c in range(n_cols)
|
||||
if r < len(lists[c]) and _is_missing(lists[c][r])
|
||||
)
|
||||
counts[pattern] = counts.get(pattern, 0) + 1
|
||||
|
||||
complete_rows = counts.get((), 0)
|
||||
n_patterns = len(counts)
|
||||
|
||||
# Rank: n_rows desc, then fewer columns first, then column names (deterministic).
|
||||
ordered = sorted(counts.items(), key=lambda kv: (-kv[1], len(kv[0]), kv[0]))
|
||||
|
||||
patterns = [
|
||||
{
|
||||
"missing_cols": list(pat),
|
||||
"n_rows": cnt,
|
||||
"pct": round(100.0 * cnt / n_rows, 2),
|
||||
}
|
||||
for pat, cnt in ordered[:limit]
|
||||
]
|
||||
|
||||
return {
|
||||
"n_rows": n_rows,
|
||||
"n_patterns": n_patterns,
|
||||
"complete_rows": complete_rows,
|
||||
"patterns": patterns,
|
||||
}
|
||||
@@ -0,0 +1,87 @@
|
||||
"""Tests para missingness_row_patterns."""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
sys.path.insert(0, os.path.dirname(__file__))
|
||||
|
||||
from missingness_row_patterns import missingness_row_patterns
|
||||
|
||||
_EXPECTED_KEYS = {"n_rows", "n_patterns", "complete_rows", "patterns"}
|
||||
|
||||
|
||||
def test_patron_dominante_completas_singleton():
|
||||
"""Golden: {A,B} co-faltan en 4 filas + 5 filas completas + 1 singleton {C}."""
|
||||
# 10 filas. A y B faltan juntas en las filas 0-3; filas 4-8 completas;
|
||||
# la fila 9 solo le falta C.
|
||||
null_mask = {
|
||||
"A": [1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
|
||||
"B": [1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
|
||||
"C": [0, 0, 0, 0, 0, 0, 0, 0, 0, 1],
|
||||
}
|
||||
out = missingness_row_patterns(null_mask)
|
||||
|
||||
assert set(out.keys()) == _EXPECTED_KEYS
|
||||
assert out["n_rows"] == 10
|
||||
# 3 patrones distintos: (A,B), () y (C,).
|
||||
assert out["n_patterns"] == 3
|
||||
# 5 filas completas (filas 4-8).
|
||||
assert out["complete_rows"] == 5
|
||||
|
||||
# Orden: n_rows desc; desempate menos columnas primero.
|
||||
# () tiene 5 filas, (A,B) 4, (C,) 1.
|
||||
pats = out["patterns"]
|
||||
assert len(pats) == 3
|
||||
|
||||
assert pats[0]["missing_cols"] == []
|
||||
assert pats[0]["n_rows"] == 5
|
||||
assert pats[0]["pct"] == 50.0
|
||||
|
||||
assert pats[1]["missing_cols"] == ["A", "B"]
|
||||
assert pats[1]["n_rows"] == 4
|
||||
assert pats[1]["pct"] == 40.0
|
||||
|
||||
assert pats[2]["missing_cols"] == ["C"]
|
||||
assert pats[2]["n_rows"] == 1
|
||||
assert pats[2]["pct"] == 10.0
|
||||
|
||||
# Tipos de salida.
|
||||
assert isinstance(out["n_rows"], int)
|
||||
assert isinstance(pats[0]["pct"], float)
|
||||
|
||||
|
||||
def test_mask_vacio():
|
||||
"""{} -> n_rows 0, sin patrones, nunca lanza."""
|
||||
out = missingness_row_patterns({})
|
||||
assert out == {
|
||||
"n_rows": 0,
|
||||
"n_patterns": 0,
|
||||
"complete_rows": 0,
|
||||
"patterns": [],
|
||||
}
|
||||
# No dict / None tambien degradan a vacio sin lanzar.
|
||||
assert missingness_row_patterns(None)["n_rows"] == 0
|
||||
# Columnas presentes pero listas vacias -> n_rows 0.
|
||||
assert missingness_row_patterns({"A": [], "B": []})["patterns"] == []
|
||||
|
||||
|
||||
def test_top_n_trunca_pero_cuenta_todos():
|
||||
"""top_n limita `patterns`, pero n_patterns reporta TODOS los distintos."""
|
||||
null_mask = {
|
||||
"A": [0, 1, 1, 0, 1],
|
||||
"B": [0, 0, 0, 1, 1],
|
||||
"C": [0, 0, 0, 0, 1],
|
||||
}
|
||||
# Filas: () (A,) (A,) (B,) (A,B,C)
|
||||
out = missingness_row_patterns(null_mask, top_n=2)
|
||||
|
||||
assert out["n_rows"] == 5
|
||||
assert out["n_patterns"] == 4 # (), (A,), (B,), (A,B,C)
|
||||
assert out["complete_rows"] == 1
|
||||
# Solo 2 patrones devueltos pese a haber 4.
|
||||
assert len(out["patterns"]) == 2
|
||||
# (A,) domina con 2 filas; desempate del 2o entre los de 1 fila -> () (0 cols).
|
||||
assert out["patterns"][0]["missing_cols"] == ["A"]
|
||||
assert out["patterns"][0]["n_rows"] == 2
|
||||
assert out["patterns"][1]["missing_cols"] == []
|
||||
assert out["patterns"][1]["n_rows"] == 1
|
||||
@@ -0,0 +1,89 @@
|
||||
---
|
||||
name: render_automatic_eda_markdown
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def render_automatic_eda_markdown(chapters_or_profile, out_path: str, meta: dict = None) -> dict"
|
||||
description: "Renderiza un documento AutomaticEDA por CAPÍTULOS (modelo de bloques independiente del formato) en un único MARKDOWN autocontenido pensado para PEGAR A UN LLM. Acepta una lista de capítulos del modelo o directamente un TableProfile del grupo eda (construye los capítulos canónicos con build_document). Prioriza TEXTO + DATOS sobre lo visual: las tablas se vuelcan como tablas markdown con TODAS las filas (sin paginar — no hay páginas que cortar), una figura matplotlib se reduce a su caption más la tabla de datos subyacente (Desde/Hasta/Frecuencia de las barras del histograma) porque un LLM no ve la imagen, y los marcadores de glosario se eliminan conservando el **negrita**. Lleva cabecera (# título), bloque de metadatos en blockquote e índice numerado con anclas GitHub. Espejo de render_automatic_eda_pdf/render_automatic_eda_pptx pero SIN manifest (KISS, el markdown es un único artefacto de texto). dict-no-throw: nunca lanza, devuelve {path, n_chars, chapters, note}; en error fatal path es None y note explica la causa. Flag opcional meta['embed_figures'] exporta PNGs junto al .md (off por defecto)."
|
||||
tags: [eda, markdown, render, report, llm, automatic-eda, chapters, versioned, no-cut, text, datascience, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: [os, re, matplotlib, "datascience.automatic_eda"]
|
||||
params:
|
||||
- name: chapters_or_profile
|
||||
desc: "una lista de capítulos del modelo AutomaticEDA (dataclasses Chapter o dicts {id,title,version,blocks}) O un TableProfile dict del grupo eda. Si es un TableProfile, los capítulos canónicos se construyen con build_document(profile, meta['ctx']). Bloques soportados: heading, markdown, kv_table, data_table, figure, image, caption, note, group, glossary_entry. Lectura defensiva: lo no reconocido se degrada a Note, nunca lanza."
|
||||
- name: out_path
|
||||
desc: "ruta del archivo .md de salida. Los directorios padre se crean si faltan. Directorio no escribible → {path:None, note:<causa>} sin lanzar."
|
||||
- name: meta
|
||||
desc: "dict opcional. Claves: title (título del documento), ctx (dict con dataset_name→Dataset, source_origin→Fuente, storage→Almacenamiento, n_rows/n_cols→Dimensiones; también lo consumen los builders de capítulo cuando se da un profile), generated_at (timestamp; si falta se genera ISO UTC), embed_figures (True para exportar PNGs <basename>_figN.png junto al .md; por defecto False y el markdown queda autocontenido)."
|
||||
output: "dict (nunca lanza): {path: str|None, n_chars: int, chapters: list[{id,version}], note: str}. En error fatal (p.ej. directorio no escribible) path es None y note explica la causa. Un documento sin capítulos aplicables produce un markdown mínimo válido con 'documento vacío' y chapters=[]."
|
||||
tested: true
|
||||
tests: ["test_golden_bloques_sinteticos_serializa_todo_a_markdown", "test_edge_documento_vacio_no_revienta", "test_profile_path_construye_capitulos_y_escribe"]
|
||||
test_file_path: "python/functions/datascience/render_automatic_eda_markdown_test.py"
|
||||
file_path: "python/functions/datascience/render_automatic_eda_markdown.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience import render_automatic_eda_markdown
|
||||
|
||||
# Desde un TableProfile del grupo eda (mismo modelo que los renderers PDF/PPTX).
|
||||
profile = {
|
||||
"table": "ventas", "source": "/data/ventas.csv",
|
||||
"n_rows": 1000, "n_cols": 2, "quality_score": 92.5,
|
||||
"columns": [
|
||||
{"name": "precio", "inferred_type": "numeric", "null_pct": 0.01,
|
||||
"numeric": {"mean": 42.5, "median": 40.0, "min": 1.0, "max": 100.0,
|
||||
"std": 12.3}},
|
||||
{"name": "categoria", "inferred_type": "categorical", "null_pct": 0.0,
|
||||
"categorical": {"top": [{"value": "neumaticos", "count": 500}]}},
|
||||
],
|
||||
}
|
||||
res = render_automatic_eda_markdown(
|
||||
profile, "reports/ventas_aeda.md",
|
||||
{"title": "EDA — ventas",
|
||||
"ctx": {"dataset_name": "Ventas", "source_origin": "ERP export",
|
||||
"n_rows": 1000, "n_cols": 2}})
|
||||
print(res["path"], res["n_chars"], res["chapters"])
|
||||
# -> reports/ventas_aeda.md 4123 [{'id':'portada','version':'1.0.0'}, ...]
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando quieras **pegar el EDA a un LLM** (ChatGPT, Claude, ...) o tenerlo en texto
|
||||
plano versionable: mismo documento por capítulos que el PDF/PPTX, pero serializado a
|
||||
Markdown sin binarios. Úsala como tercera salida junto a `render_automatic_eda_pdf`
|
||||
(móvil) y `render_automatic_eda_pptx` (compartir) desde el MISMO modelo de capítulos.
|
||||
A diferencia de esas dos, no hay páginas ni slides: todas las filas de cada tabla se
|
||||
vuelcan (nada se corta) y cada figura se reduce a su caption + la tabla de datos
|
||||
subyacente, que es lo que un LLM puede leer. Para añadir capítulos al documento, ver
|
||||
`docs/capabilities/automatic_eda.md`.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura**: escribe el `.md` en `out_path` (crea los directorios padre). Con
|
||||
`meta['embed_figures']=True` además exporta un PNG `<basename>_figN.png` por figura
|
||||
junto al `.md`; por defecto NO exporta nada y el markdown queda autocontenido.
|
||||
- **Nunca lanza** (dict-no-throw): un bloque que falle se degrada a una nota y se anota
|
||||
en `note`; el documento se escribe igual. Un profile/lista vacíos producen un markdown
|
||||
mínimo válido con `*(documento vacío …)*` y `chapters=[]`.
|
||||
- **Figuras = datos, no imagen**: un bloque `figure` se serializa como `*Figura: caption*`
|
||||
más, si la figura matplotlib trae barras (histograma / barras), una tabla
|
||||
`| Desde | Hasta | Frecuencia |` extraída de los `Rectangle` patches (máx 100 filas;
|
||||
el resto se trunca con `*… (N filas más)*`). Si no hay barras o algo falla, solo sale
|
||||
el caption. La figura se cierra (`plt.close`) tras leerla.
|
||||
- **Glosario vs negrita**: se eliminan SOLO los marcadores de glosario
|
||||
`[[term:key]]visible[[/term]]` (queda `visible`); el `**negrita**` markdown SE
|
||||
CONSERVA (es válido). No se usa `strip_inline_md` aquí porque ese también quita el bold.
|
||||
- **Anclas del índice**: el `## Índice` enlaza cada capítulo con un ancla estilo GitHub
|
||||
del encabezado `## N. Título` (minúsculas, espacios→`-`, sin signos). Si dos capítulos
|
||||
comparten título exacto sus anclas colisionan (caso raro; los capítulos canónicos tienen
|
||||
títulos únicos).
|
||||
- **Tablas**: las celdas escapan `|` (→ `\|`) y pliegan saltos de línea a `<br>` para no
|
||||
romper la columna. No hay reparto por ancho — un LLM no lo necesita.
|
||||
@@ -0,0 +1,55 @@
|
||||
"""render_automatic_eda_markdown — chapter-based EDA report as one Markdown file.
|
||||
|
||||
Public ``eda``-group entry point that serializes an AutomaticEDA document (a list
|
||||
of chapters, or an ``eda`` TableProfile from which the canonical chapters are
|
||||
built) into a single self-contained Markdown file optimised to be **pasted into
|
||||
an LLM**: plain text, Markdown tables (every row dumped — there are no pages to
|
||||
cut), figures reduced to caption + underlying data, no binaries. It mirrors
|
||||
``render_automatic_eda_pdf`` / ``render_automatic_eda_pptx`` but for text output;
|
||||
unlike those it writes no manifest (KISS — Markdown is a single text artefact).
|
||||
|
||||
dict-no-throw: never raises. Returns ``{path, n_chars, chapters, note}``; on a
|
||||
fatal error ``path`` is None and ``note`` explains why.
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
from datascience.automatic_eda import build_document, render_md
|
||||
from datascience.automatic_eda.model import as_chapter, as_chapters
|
||||
|
||||
|
||||
def _coerce_chapters(chapters_or_profile, meta: dict) -> list:
|
||||
"""Accept chapters OR an eda profile and return a list of Chapter."""
|
||||
arg = chapters_or_profile
|
||||
if isinstance(arg, (list, tuple)):
|
||||
return as_chapters(list(arg))
|
||||
if isinstance(arg, dict):
|
||||
if "blocks" in arg and "columns" not in arg:
|
||||
ch = as_chapter(arg)
|
||||
return [ch] if ch is not None else []
|
||||
return build_document(arg, (meta or {}).get("ctx"))
|
||||
return []
|
||||
|
||||
|
||||
def render_automatic_eda_markdown(chapters_or_profile, out_path: str,
|
||||
meta: dict = None) -> dict:
|
||||
"""Render an AutomaticEDA document into a single self-contained Markdown file.
|
||||
|
||||
Args:
|
||||
chapters_or_profile: a list of chapters (``Chapter`` dataclasses or
|
||||
dicts) or an ``eda`` TableProfile dict (chapters built via
|
||||
``build_document(profile, meta['ctx'])``).
|
||||
out_path: filesystem path for the ``.md`` (parent dirs are created).
|
||||
meta: optional dict. Recognised keys: ``title``, ``ctx`` (dict with
|
||||
``dataset_name``/``source_origin``/``storage``/``n_rows``/``n_cols``),
|
||||
``generated_at``, ``embed_figures`` (export PNGs beside the .md,
|
||||
default False — off keeps the Markdown self-contained).
|
||||
|
||||
Returns:
|
||||
dict (never raises): ``{path: str|None, n_chars: int,
|
||||
chapters: list[{id, version}], note: str}``. On a fatal error ``path`` is
|
||||
None and ``note`` explains the cause.
|
||||
"""
|
||||
meta = dict(meta or {})
|
||||
chapters = _coerce_chapters(chapters_or_profile, meta)
|
||||
return render_md(chapters, out_path, meta)
|
||||
@@ -0,0 +1,168 @@
|
||||
"""Tests for render_automatic_eda_markdown — DoD: golden + edge + profile path.
|
||||
|
||||
Self-contained synthetic blocks (no DuckDB). Verifies every block kind serializes
|
||||
to Markdown (heading, markdown with glossary+bold, kv/data tables, a figure whose
|
||||
histogram bars become a data table, caption, note, group, glossary entry), that a
|
||||
leading level-1 heading equal to the chapter title is omitted, that an empty
|
||||
document degrades to a valid minimal Markdown without raising, and that passing a
|
||||
minimal TableProfile builds chapters and writes the file.
|
||||
"""
|
||||
|
||||
import os
|
||||
import tempfile
|
||||
|
||||
from datascience.render_automatic_eda_markdown import render_automatic_eda_markdown
|
||||
from datascience.automatic_eda.model import (
|
||||
Caption, Chapter, DataTable, Figure, GlossaryEntry, Group, Heading, KVTable,
|
||||
Markdown, Note,
|
||||
)
|
||||
|
||||
|
||||
def _hist_fig():
|
||||
import matplotlib
|
||||
matplotlib.use("Agg")
|
||||
import matplotlib.pyplot as plt
|
||||
fig, ax = plt.subplots()
|
||||
ax.hist([1, 1, 2, 2, 2, 3, 4, 4, 5, 5, 5, 5], bins=5)
|
||||
return fig
|
||||
|
||||
|
||||
def _chapters() -> list:
|
||||
blocks = [
|
||||
Heading("Demo", 1), # == chapter title -> omitted.
|
||||
Heading("Seccion dos", 2), # -> ####
|
||||
Markdown("Texto con [[term:ent]]entropia[[/term]] y **bold** aqui."),
|
||||
KVTable(rows=[("Filas", 1000), ("Columnas", 5)], title="Resumen"),
|
||||
DataTable(header=["col", "valor"],
|
||||
rows=[["alpha", "111"], ["beta", "222"], ["gamma", "333"]],
|
||||
title="Datos", note="nota inferior"),
|
||||
Figure(make=_hist_fig, caption="Histograma demo"),
|
||||
Caption("pie de figura"),
|
||||
Note("una nota aparte"),
|
||||
Group(title="Grupo X", blocks=[Markdown("dentro del grupo")]),
|
||||
GlossaryEntry(key="ent", label="Entropia",
|
||||
definition="Medida de incertidumbre."),
|
||||
]
|
||||
return [Chapter(id="demo", title="Demo", version="1.0.0", blocks=blocks)]
|
||||
|
||||
|
||||
def _read(path: str) -> str:
|
||||
with open(path, "r", encoding="utf-8") as fh:
|
||||
return fh.read()
|
||||
|
||||
|
||||
def test_golden_bloques_sinteticos_serializa_todo_a_markdown():
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "demo.md")
|
||||
res = render_automatic_eda_markdown(
|
||||
_chapters(), out,
|
||||
{"title": "EDA Demo",
|
||||
"ctx": {"dataset_name": "Demo", "n_rows": 12, "n_cols": 2}})
|
||||
assert res["path"] == out
|
||||
assert os.path.exists(out)
|
||||
assert res["n_chars"] > 0
|
||||
assert res["chapters"] == [{"id": "demo", "version": "1.0.0"}]
|
||||
|
||||
content = _read(out)
|
||||
# Document structure.
|
||||
assert content.startswith("# ")
|
||||
assert "## Índice" in content
|
||||
# A Markdown table is present (header + separator row).
|
||||
assert "| " in content and "| --- " in content
|
||||
# DataTable values are all dumped.
|
||||
for v in ("alpha", "111", "beta", "222", "gamma", "333"):
|
||||
assert v in content
|
||||
# Glossary markers stripped, bold kept.
|
||||
assert "[[term" not in content
|
||||
assert "[[/term]]" not in content
|
||||
assert "**bold**" in content
|
||||
assert "entropia" in content # visible glossary text preserved.
|
||||
# Figure histogram bars became a data table.
|
||||
assert "| Desde | Hasta | Frecuencia |" in content
|
||||
# Glossary entry rendered as a level-3 heading.
|
||||
assert "### Entropia" in content
|
||||
# Level-2 heading -> ####.
|
||||
assert "#### Seccion dos" in content
|
||||
# Leading level-1 heading equal to the title was omitted.
|
||||
assert "### Demo" not in content
|
||||
# Group title rendered.
|
||||
assert "### Grupo X" in content
|
||||
|
||||
|
||||
def _hist_fig_with_span():
|
||||
"""Histogram with a wide ``axvspan`` (±1σ band) over it.
|
||||
|
||||
Reproduces the num_distr figure shape: matplotlib keeps the span as a lone
|
||||
Rectangle in ``ax.patches`` alongside the bin bars; it must NOT leak into the
|
||||
extracted bins table as a fake bin (it is ~5x wider than a bin)."""
|
||||
import matplotlib
|
||||
matplotlib.use("Agg")
|
||||
import matplotlib.pyplot as plt
|
||||
fig, ax = plt.subplots()
|
||||
data = [1, 1, 2, 2, 2, 3, 4, 4, 5, 5, 5, 5]
|
||||
ax.hist(data, bins=5)
|
||||
ax.axvspan(2.0, 4.0, alpha=0.2) # mean±σ band — a wide stray rectangle.
|
||||
return fig
|
||||
|
||||
|
||||
def test_figura_descarta_axvspan_de_la_tabla_de_bins():
|
||||
"""The ±1σ band rectangle must not appear as a row in the bins table."""
|
||||
blocks = [Figure(make=_hist_fig_with_span, caption="Hist con banda")]
|
||||
chapters = [Chapter(id="f", title="Fig", version="1.0.0", blocks=blocks)]
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "fig.md")
|
||||
render_automatic_eda_markdown(chapters, out, {"title": "T"})
|
||||
content = _read(out)
|
||||
assert "| Desde | Hasta | Frecuencia |" in content
|
||||
# Extract the rows of the bins table: lines between the header/separator
|
||||
# and the next blank line.
|
||||
lines = content.splitlines()
|
||||
hi = next(i for i, ln in enumerate(lines)
|
||||
if ln.startswith("| Desde | Hasta | Frecuencia |"))
|
||||
rows = []
|
||||
for ln in lines[hi + 2:]: # skip header + separator
|
||||
if not ln.startswith("|"):
|
||||
break
|
||||
rows.append(ln)
|
||||
# 5 histogram bins, no extra wide span row.
|
||||
assert len(rows) == 5, rows
|
||||
# No row spans a width of ~2.0 (the axvspan from x=2 to x=4).
|
||||
for ln in rows:
|
||||
cells = [c.strip() for c in ln.strip("|").split("|")]
|
||||
lo, hi_v = float(cells[0]), float(cells[1])
|
||||
assert (hi_v - lo) < 1.5, f"wide span leaked: {ln}"
|
||||
|
||||
|
||||
def test_edge_documento_vacio_no_revienta():
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "empty.md")
|
||||
res = render_automatic_eda_markdown([], out, {})
|
||||
assert res["path"] == out
|
||||
assert os.path.exists(out)
|
||||
assert res["chapters"] == []
|
||||
content = _read(out)
|
||||
assert "documento vacío" in content
|
||||
assert content.startswith("# ")
|
||||
|
||||
|
||||
def test_profile_path_construye_capitulos_y_escribe():
|
||||
profile = {
|
||||
"table": "mini",
|
||||
"source": "/data/mini.csv",
|
||||
"n_rows": 10,
|
||||
"n_cols": 1,
|
||||
"quality_score": 88.0,
|
||||
"columns": [
|
||||
{"name": "x", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"null_count": 0,
|
||||
"numeric": {"mean": 1.0, "median": 1.0, "min": 0.0, "max": 2.0,
|
||||
"std": 0.5}},
|
||||
],
|
||||
}
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "mini.md")
|
||||
res = render_automatic_eda_markdown(
|
||||
profile, out, {"title": "Mini", "ctx": {"dataset_name": "Mini"}})
|
||||
assert res["path"] == out # not None — no exception, file written.
|
||||
assert os.path.exists(out)
|
||||
assert res["n_chars"] > 0
|
||||
@@ -0,0 +1,91 @@
|
||||
---
|
||||
name: suggest_intratable_fk_candidates
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def suggest_intratable_fk_candidates(profile: dict, max_candidates: int = 20) -> list"
|
||||
description: "Sobre el TableProfile de UNA tabla (el dict de profile_table), sugiere por heuristica de nombre + cardinalidad que columnas PARECEN una clave foranea hacia otra tabla, cuando no hay relaciones inter-tabla que medir (una sola tabla). Es una SUGERENCIA, no una afirmacion: el ref_table_guess es el stem del nombre (customer_id -> customer) y NO confirma containment. Pura: solo lee el dict, sin I/O; nunca lanza (devuelve [])."
|
||||
tags: [eda, datascience, relationships, foreign-key, fk, heuristic, schema, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: []
|
||||
params:
|
||||
- name: profile
|
||||
desc: "TableProfile (dict que produce profile_table / summarize_table_*). Se leen de forma defensiva `columns` (lista de ColumnProfile con name/inferred_type/physical_type/distinct_count/unique_pct/flags), `n_rows` (int) y `key_candidates` (lista de nombres de columna ya candidatos a PK, que se excluyen). Si no es dict o no trae columns -> []."
|
||||
- name: max_candidates
|
||||
desc: "Tope de sugerencias devueltas (default 20). Las columnas candidatas se ordenan por distinct_count descendente (mas informativas primero) antes de cortar a este maximo."
|
||||
output: "list (posiblemente vacia) de dicts, uno por columna sugerida, con claves: `column` (nombre), `ref_table_guess` (tabla conjeturada por el stem del nombre, p.ej. customer_id -> 'customer'), `reason` (frase humana que deja claro que es heuristica sin confirmar containment), `distinct_count` (int|None), `unique_pct` (float|None, fraccion 0-1 tal como viene del profile), `inferred_type` (str), `physical_type` (str). Nunca lanza."
|
||||
tested: true
|
||||
tests: ["test_golden_customer_id_detectado_otras_no", "test_camelcase_albumid_detectado", "test_constante_status_id_no_aparece", "test_profile_vacio_y_none_devuelven_lista_vacia", "test_category_id_casi_unico_parece_pk_no_aparece", "test_ref_table_guess_multitoken_y_orden_por_distinct", "test_max_candidates_corta_la_lista", "test_id_generico_solo_nunca_es_fk"]
|
||||
test_file_path: "python/functions/datascience/suggest_intratable_fk_candidates_test.py"
|
||||
file_path: "python/functions/datascience/suggest_intratable_fk_candidates.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience import suggest_intratable_fk_candidates
|
||||
|
||||
# TableProfile de UNA tabla (tipo titanic): customer_id es FK N:1; id es la PK;
|
||||
# amount es una medida float; name es categorica sin sufijo de id.
|
||||
profile = {
|
||||
"n_rows": 891,
|
||||
"key_candidates": ["id"],
|
||||
"columns": [
|
||||
{"name": "id", "inferred_type": "numeric", "physical_type": "BIGINT",
|
||||
"distinct_count": 891, "unique_pct": 1.0, "flags": ["possible_id"]},
|
||||
{"name": "customer_id", "inferred_type": "numeric", "physical_type": "BIGINT",
|
||||
"distinct_count": 137, "unique_pct": 0.15, "flags": []},
|
||||
{"name": "amount", "inferred_type": "numeric", "physical_type": "DOUBLE",
|
||||
"distinct_count": 400, "unique_pct": 0.45, "flags": []},
|
||||
{"name": "name", "inferred_type": "categorical", "physical_type": "VARCHAR",
|
||||
"distinct_count": 700, "unique_pct": 0.78, "flags": []},
|
||||
],
|
||||
}
|
||||
|
||||
out = suggest_intratable_fk_candidates(profile)
|
||||
[c["column"] for c in out] # -> ["customer_id"]
|
||||
out[0]["ref_table_guess"] # -> "customer"
|
||||
out[0]["reason"]
|
||||
# -> "el nombre termina en '_id' y es N:1 (137 valores distintos < 891 filas):
|
||||
# parece (heuristica por nombre, sin confirmar containment) una referencia a
|
||||
# una tabla «customer»"
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando el EDA tiene SOLO UNA tabla y, por tanto, no se puede inferir una FK
|
||||
inter-tabla por containment (no hay otra tabla cuyos valores contener). Es el plan B
|
||||
del capitulo RELACIONES de AutomaticEDA: en vez de medir solapamiento de valores
|
||||
entre tablas (lo correcto cuando hay varias, ver `infer_fk_containment_duckdb` /
|
||||
`build_join_graph`), conjetura por el NOMBRE de la columna (`<algo>_id`) y por su
|
||||
CARDINALIDAD N:1 que columnas parecen apuntar a una entidad externa. Usala para
|
||||
enriquecer el reporte con "estas columnas parecen referencias a otras tablas" sin
|
||||
prometer que esa tabla exista. NO la uses si tienes varias tablas: ahi mide
|
||||
containment de verdad.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Es **heuristica**, no una verdad: produce **falsos positivos** (una columna
|
||||
`period_id` que en realidad es un codigo libre, no una FK) y **falsos negativos**
|
||||
(una FK que no se llama `*_id`, p.ej. `parent`, `owner`, `sku`). No la trates como
|
||||
una afirmacion de esquema.
|
||||
- `ref_table_guess` es una **conjetura por el nombre** (el stem sin el sufijo id):
|
||||
`customer_id` -> `customer`, `AlbumId` -> `album`, `manager_staff_id` ->
|
||||
`manager_staff`. Puede no coincidir con el nombre real de la tabla (plurales,
|
||||
prefijos, alias). Es una pista, no un join garantizado.
|
||||
- **NO confirma containment**: no comprueba que los valores de la columna existan en
|
||||
ninguna otra tabla (no puede — solo recibe el perfil de una tabla). Para confirmar
|
||||
una FK real con varias tablas usa `infer_fk_containment_duckdb`.
|
||||
- Excluye deliberadamente: el `id`/`Id`/`ID` generico a secas (suele ser la PK
|
||||
propia, no una referencia), las columnas constantes, las que parecen unicas
|
||||
(`unique_pct >= 0.99`, mas PK que FK) y los tipos no-clave (float/decimal son
|
||||
medidas; date/time/timestamp y boolean no son claves). En camelCase, `paid`,
|
||||
`valid`, `grid` (con `id` en minuscula y sin separador) NO se confunden con FK.
|
||||
- `unique_pct` se interpreta como **fraccion 0-1** (tal como la emite el profile), no
|
||||
como porcentaje 0-100.
|
||||
@@ -0,0 +1,202 @@
|
||||
"""suggest_intratable_fk_candidates — heuristica de FK intra-tabla del grupo `eda`.
|
||||
|
||||
Sobre el TableProfile de UNA tabla (el dict que produce ``profile_table``), sugiere
|
||||
por heuristica de NOMBRE + CARDINALIDAD que columnas PARECEN una clave foranea hacia
|
||||
otra tabla, util cuando no hay relaciones inter-tabla disponibles (una sola tabla y,
|
||||
por tanto, sin containment cruzado que medir). Es una SUGERENCIA, no una afirmacion:
|
||||
no confirma que exista la tabla referida ni que los valores esten contenidos en ella.
|
||||
|
||||
La consume el capitulo RELACIONES de AutomaticEDA cuando solo hay una tabla.
|
||||
|
||||
Funcion PURA: solo lee el dict (lectura defensiva con ``.get``), no hace I/O y nunca
|
||||
lanza por inputs raros (devuelve ``[]``).
|
||||
"""
|
||||
|
||||
# inferred_type que es compatible con una clave foranea (entero/categorico).
|
||||
_FK_INFERRED_OK = {"numeric", "categorical", "integer"}
|
||||
|
||||
# Prefijos de physical_type que admiten ser clave foranea (enteros, texto, uuid).
|
||||
_FK_PHYSICAL_PREFIXES = (
|
||||
"int", "bigint", "smallint", "tinyint", "hugeint", "uint",
|
||||
"varchar", "text", "char", "bpchar", "string", "uuid",
|
||||
)
|
||||
|
||||
# Prefijos de physical_type que EXCLUYEN ser clave foranea: medidas en coma flotante
|
||||
# (float/double/decimal/numeric/real), temporales (date/time/timestamp/interval) y
|
||||
# boolean. Se comprueban ANTES que las senales positivas (la exclusion gana: una
|
||||
# columna numeric con physical DOUBLE es una medida, no una FK).
|
||||
_FK_PHYSICAL_EXCLUDE = (
|
||||
"float", "double", "decimal", "numeric", "real",
|
||||
"date", "time", "timestamp", "interval",
|
||||
"bool",
|
||||
)
|
||||
|
||||
|
||||
def _fk_name_signal(name):
|
||||
"""Detecta el sufijo de clave foranea en el nombre y devuelve ``(stem, sufijo)``.
|
||||
|
||||
Reconoce ``<algo>_id`` (snake), ``<Algo>Id`` y ``<algo>ID`` (camel). NO reconoce
|
||||
el ``id``/``Id``/``ID`` generico a secas (suele ser la PK propia de la tabla, no
|
||||
una referencia). En camelCase la ``I`` mayuscula marca el limite de palabra, asi
|
||||
que ``paid``/``valid``/``grid`` (``id`` en minuscula y sin separador) NO matchean.
|
||||
|
||||
El ``stem`` se devuelve en minusculas y sirve de ``ref_table_guess`` (la tabla a
|
||||
la que probablemente apunta): ``customer_id`` -> ``"customer"``, ``AlbumId`` ->
|
||||
``"album"``, ``manager_staff_id`` -> ``"manager_staff"``. Devuelve ``None`` si no
|
||||
hay senal de nombre.
|
||||
"""
|
||||
if not isinstance(name, str):
|
||||
return None
|
||||
raw = name.strip()
|
||||
if not raw:
|
||||
return None
|
||||
# Snake: termina en "_id" (indiferente a mayusculas en la parte "id").
|
||||
if raw.lower().endswith("_id"):
|
||||
stem = raw[:-3].rstrip("_-. ")
|
||||
if not stem:
|
||||
return None
|
||||
return (stem.lower(), "_id")
|
||||
# Camel todo-mayuscula: "...ID" (p.ej. customerID).
|
||||
if raw.endswith("ID"):
|
||||
stem = raw[:-2].rstrip("_-. ")
|
||||
if not stem:
|
||||
return None
|
||||
return (stem.lower(), "ID")
|
||||
# Camel: "...Id" (p.ej. AlbumId).
|
||||
if raw.endswith("Id"):
|
||||
stem = raw[:-2].rstrip("_-. ")
|
||||
if not stem:
|
||||
return None
|
||||
return (stem.lower(), "Id")
|
||||
return None
|
||||
|
||||
|
||||
def _fk_type_compatible(col):
|
||||
"""True si el tipo de la columna admite ser clave foranea.
|
||||
|
||||
Compatible si el ``physical_type`` NO es una medida flotante, una temporal ni
|
||||
boolean, Y ademas (``inferred_type`` en {numeric, categorical, integer} O el
|
||||
``physical_type`` empieza por entero/varchar/text/char/uuid). La comparacion es
|
||||
indistinta a mayusculas/minusculas.
|
||||
"""
|
||||
phys = (col.get("physical_type") or "").strip().lower()
|
||||
inferred = (col.get("inferred_type") or "").strip().lower()
|
||||
# Exclusion por tipo fisico (gana sobre cualquier senal positiva).
|
||||
for bad in _FK_PHYSICAL_EXCLUDE:
|
||||
if phys.startswith(bad):
|
||||
return False
|
||||
# Senal positiva por tipo inferido.
|
||||
if inferred in _FK_INFERRED_OK:
|
||||
return True
|
||||
# Senal positiva por tipo fisico (entero/texto/uuid).
|
||||
for good in _FK_PHYSICAL_PREFIXES:
|
||||
if phys.startswith(good):
|
||||
return True
|
||||
return False
|
||||
|
||||
|
||||
def suggest_intratable_fk_candidates(profile: dict, max_candidates: int = 20) -> list:
|
||||
"""Sugiere columnas que parecen una FK intra-tabla por nombre + cardinalidad.
|
||||
|
||||
Heuristica (no afirma nada): una columna es candidata a clave foranea si su nombre
|
||||
tiene sufijo de id con stem no vacio (``<algo>_id`` / ``<Algo>Id`` / ``<algo>ID``,
|
||||
NUNCA el ``id`` generico), no es ya candidata a PK, no es constante, tiene
|
||||
cardinalidad alta pero por debajo del numero de filas (N:1, no unica) y un tipo
|
||||
compatible con clave (entero/categorico/texto/uuid; nunca float/fecha/boolean).
|
||||
|
||||
Args:
|
||||
profile: TableProfile (dict de ``profile_table``). Se leen, de forma
|
||||
defensiva, ``columns`` (lista de ColumnProfile), ``n_rows`` y
|
||||
``key_candidates`` (nombres de columna ya candidatos a PK).
|
||||
max_candidates: tope de sugerencias devueltas (default 20). Las columnas se
|
||||
ordenan por ``distinct_count`` descendente (mas informativas primero)
|
||||
antes de cortar.
|
||||
|
||||
Returns:
|
||||
list de dicts (posiblemente vacia), uno por columna sugerida, con claves:
|
||||
``column``, ``ref_table_guess`` (stem del nombre), ``reason`` (frase humana),
|
||||
``distinct_count``, ``unique_pct`` (fraccion 0-1 tal como viene del profile),
|
||||
``inferred_type``, ``physical_type``. Nunca lanza: si ``profile`` no es dict o
|
||||
no hay columnas, devuelve ``[]``.
|
||||
"""
|
||||
if not isinstance(profile, dict):
|
||||
return []
|
||||
columns = profile.get("columns")
|
||||
if not isinstance(columns, list):
|
||||
return []
|
||||
|
||||
n_rows = profile.get("n_rows")
|
||||
has_n_rows = (
|
||||
isinstance(n_rows, int) and not isinstance(n_rows, bool) and n_rows > 0
|
||||
)
|
||||
|
||||
key_candidates = profile.get("key_candidates")
|
||||
if not isinstance(key_candidates, (list, tuple, set)):
|
||||
key_candidates = []
|
||||
key_set = set(key_candidates)
|
||||
|
||||
out = []
|
||||
for col in columns:
|
||||
if not isinstance(col, dict):
|
||||
continue
|
||||
name = col.get("name")
|
||||
|
||||
# 1) Senal de nombre: sufijo de id con stem no vacio.
|
||||
signal = _fk_name_signal(name)
|
||||
if signal is None:
|
||||
continue
|
||||
ref_guess, suffix = signal
|
||||
|
||||
# 2) No es ya candidata a PK (clave primaria de la propia tabla).
|
||||
if name in key_set:
|
||||
continue
|
||||
|
||||
# 3) No constante y con >= 2 valores distintos.
|
||||
flags = col.get("flags") or []
|
||||
if "constant" in flags:
|
||||
continue
|
||||
dc = col.get("distinct_count")
|
||||
if not (isinstance(dc, int) and not isinstance(dc, bool) and dc >= 2):
|
||||
continue
|
||||
|
||||
# 4) Cardinalidad alta pero < n_rows (no es PK) y no parece unica.
|
||||
if has_n_rows and dc >= n_rows:
|
||||
continue
|
||||
unique_pct = col.get("unique_pct")
|
||||
has_unique = (
|
||||
isinstance(unique_pct, (int, float)) and not isinstance(unique_pct, bool)
|
||||
)
|
||||
if has_unique and unique_pct >= 0.99:
|
||||
continue
|
||||
|
||||
# 5) Tipo compatible con clave foranea (entero/categorico/texto; no medida).
|
||||
if not _fk_type_compatible(col):
|
||||
continue
|
||||
|
||||
out.append(
|
||||
{
|
||||
"column": name,
|
||||
"ref_table_guess": ref_guess,
|
||||
"reason": _build_reason(suffix, dc, n_rows if has_n_rows else None, ref_guess),
|
||||
"distinct_count": dc,
|
||||
"unique_pct": float(unique_pct) if has_unique else None,
|
||||
"inferred_type": col.get("inferred_type") or "",
|
||||
"physical_type": col.get("physical_type") or "",
|
||||
}
|
||||
)
|
||||
|
||||
# Mas informativas primero (mayor cardinalidad), luego corte.
|
||||
out.sort(key=lambda d: d.get("distinct_count") or 0, reverse=True)
|
||||
return out[: max(0, int(max_candidates))]
|
||||
|
||||
|
||||
def _build_reason(suffix, dc, n_rows, ref_guess):
|
||||
"""Frase humana que deja claro que la sugerencia es heuristica, no confirmada."""
|
||||
if n_rows is not None:
|
||||
card = f"es N:1 ({dc} valores distintos < {n_rows} filas)"
|
||||
else:
|
||||
card = f"tiene {dc} valores distintos que se repiten (cardinalidad N:1)"
|
||||
return (
|
||||
f"el nombre termina en '{suffix}' y {card}: parece (heuristica por nombre, "
|
||||
f"sin confirmar containment) una referencia a una tabla «{ref_guess}»"
|
||||
)
|
||||
@@ -0,0 +1,157 @@
|
||||
"""Tests para suggest_intratable_fk_candidates (funcion pura, sin I/O)."""
|
||||
|
||||
from suggest_intratable_fk_candidates import suggest_intratable_fk_candidates
|
||||
|
||||
|
||||
def _col(name, inferred_type="numeric", physical_type="BIGINT", distinct_count=10,
|
||||
unique_pct=0.1, flags=None):
|
||||
"""Construye un ColumnProfile minimo a mano (el dict que emite profile_table)."""
|
||||
return {
|
||||
"name": name,
|
||||
"inferred_type": inferred_type,
|
||||
"physical_type": physical_type,
|
||||
"semantic_type": "",
|
||||
"distinct_count": distinct_count,
|
||||
"unique_pct": unique_pct,
|
||||
"null_count": 0,
|
||||
"null_pct": 0.0,
|
||||
"flags": list(flags) if flags else [],
|
||||
}
|
||||
|
||||
|
||||
def test_golden_customer_id_detectado_otras_no():
|
||||
# Tabla tipo titanic: customer_id es FK N:1; id es la PK; amount es medida;
|
||||
# name es categorica sin sufijo de id. Solo customer_id debe aparecer.
|
||||
profile = {
|
||||
"n_rows": 891,
|
||||
"key_candidates": ["id"],
|
||||
"columns": [
|
||||
_col("id", inferred_type="numeric", physical_type="BIGINT",
|
||||
distinct_count=891, unique_pct=1.0, flags=["possible_id"]),
|
||||
_col("customer_id", inferred_type="numeric", physical_type="BIGINT",
|
||||
distinct_count=137, unique_pct=0.15, flags=[]),
|
||||
_col("amount", inferred_type="numeric", physical_type="DOUBLE",
|
||||
distinct_count=400, unique_pct=0.45),
|
||||
_col("name", inferred_type="categorical", physical_type="VARCHAR",
|
||||
distinct_count=700, unique_pct=0.78),
|
||||
],
|
||||
}
|
||||
out = suggest_intratable_fk_candidates(profile)
|
||||
assert isinstance(out, list)
|
||||
assert [c["column"] for c in out] == ["customer_id"]
|
||||
cand = out[0]
|
||||
assert cand["ref_table_guess"] == "customer"
|
||||
assert cand["distinct_count"] == 137
|
||||
assert cand["unique_pct"] == 0.15
|
||||
assert cand["inferred_type"] == "numeric"
|
||||
assert cand["physical_type"] == "BIGINT"
|
||||
# La razon deja claro que es heuristica + cita el sufijo y la tabla.
|
||||
assert "customer" in cand["reason"]
|
||||
assert "_id" in cand["reason"]
|
||||
|
||||
|
||||
def test_camelcase_albumid_detectado():
|
||||
# AlbumId (camelCase, VARCHAR) -> detectada, ref_table_guess "album".
|
||||
profile = {
|
||||
"n_rows": 3503,
|
||||
"key_candidates": ["TrackId"],
|
||||
"columns": [
|
||||
_col("AlbumId", inferred_type="categorical", physical_type="VARCHAR",
|
||||
distinct_count=347, unique_pct=0.10),
|
||||
],
|
||||
}
|
||||
out = suggest_intratable_fk_candidates(profile)
|
||||
# TrackId es PK candidata (en key_candidates), AlbumId no -> AlbumId aparece.
|
||||
assert [c["column"] for c in out] == ["AlbumId"]
|
||||
assert out[0]["ref_table_guess"] == "album"
|
||||
|
||||
|
||||
def test_constante_status_id_no_aparece():
|
||||
# status_id constante (flag "constant", distinct_count 1) NO es FK util.
|
||||
profile = {
|
||||
"n_rows": 1000,
|
||||
"key_candidates": [],
|
||||
"columns": [
|
||||
_col("status_id", inferred_type="numeric", physical_type="INTEGER",
|
||||
distinct_count=1, unique_pct=0.001, flags=["constant"]),
|
||||
],
|
||||
}
|
||||
out = suggest_intratable_fk_candidates(profile)
|
||||
assert out == []
|
||||
|
||||
|
||||
def test_profile_vacio_y_none_devuelven_lista_vacia():
|
||||
# Lectura defensiva: ni {} ni None lanzan; devuelven [].
|
||||
assert suggest_intratable_fk_candidates({}) == []
|
||||
assert suggest_intratable_fk_candidates(None) == []
|
||||
# profile sin columns o con columns no-lista tampoco lanza.
|
||||
assert suggest_intratable_fk_candidates({"n_rows": 10}) == []
|
||||
assert suggest_intratable_fk_candidates({"columns": "no-soy-lista"}) == []
|
||||
|
||||
|
||||
def test_category_id_casi_unico_parece_pk_no_aparece():
|
||||
# unique_pct 0.999 -> parece PK (no N:1) -> NO se sugiere como FK.
|
||||
profile = {
|
||||
"n_rows": 891,
|
||||
"key_candidates": [],
|
||||
"columns": [
|
||||
_col("category_id", inferred_type="numeric", physical_type="BIGINT",
|
||||
distinct_count=890, unique_pct=0.999),
|
||||
],
|
||||
}
|
||||
out = suggest_intratable_fk_candidates(profile)
|
||||
assert out == []
|
||||
|
||||
|
||||
def test_ref_table_guess_multitoken_y_orden_por_distinct():
|
||||
# manager_staff_id conserva los underscores del stem -> "manager_staff".
|
||||
# Ademas, con varias candidatas, se ordenan por distinct_count descendente.
|
||||
profile = {
|
||||
"n_rows": 10000,
|
||||
"key_candidates": ["staff_id"], # staff_id es PK aqui, no debe aparecer
|
||||
"columns": [
|
||||
_col("staff_id", inferred_type="numeric", physical_type="BIGINT",
|
||||
distinct_count=10000, unique_pct=1.0, flags=["possible_id"]),
|
||||
_col("store_id", inferred_type="numeric", physical_type="INTEGER",
|
||||
distinct_count=2, unique_pct=0.0002),
|
||||
_col("manager_staff_id", inferred_type="numeric", physical_type="INTEGER",
|
||||
distinct_count=40, unique_pct=0.004),
|
||||
],
|
||||
}
|
||||
out = suggest_intratable_fk_candidates(profile)
|
||||
cols = [c["column"] for c in out]
|
||||
# staff_id excluida (PK); las otras dos ordenadas por distinct desc.
|
||||
assert cols == ["manager_staff_id", "store_id"]
|
||||
refs = {c["column"]: c["ref_table_guess"] for c in out}
|
||||
assert refs["manager_staff_id"] == "manager_staff"
|
||||
assert refs["store_id"] == "store"
|
||||
|
||||
|
||||
def test_max_candidates_corta_la_lista():
|
||||
# max_candidates limita el numero de sugerencias devueltas.
|
||||
profile = {
|
||||
"n_rows": 10000,
|
||||
"key_candidates": [],
|
||||
"columns": [
|
||||
_col("a_id", distinct_count=300, unique_pct=0.03),
|
||||
_col("b_id", distinct_count=200, unique_pct=0.02),
|
||||
_col("c_id", distinct_count=100, unique_pct=0.01),
|
||||
],
|
||||
}
|
||||
out = suggest_intratable_fk_candidates(profile, max_candidates=2)
|
||||
assert [c["column"] for c in out] == ["a_id", "b_id"]
|
||||
|
||||
|
||||
def test_id_generico_solo_nunca_es_fk():
|
||||
# 'id'/'Id'/'ID' a secas (sin stem) jamas se sugieren como FK.
|
||||
profile = {
|
||||
"n_rows": 500,
|
||||
"key_candidates": [],
|
||||
"columns": [
|
||||
_col("id", distinct_count=500, unique_pct=1.0),
|
||||
_col("Id", distinct_count=120, unique_pct=0.24),
|
||||
_col("ID", distinct_count=80, unique_pct=0.16),
|
||||
],
|
||||
}
|
||||
out = suggest_intratable_fk_candidates(profile)
|
||||
assert out == []
|
||||
@@ -3,7 +3,7 @@ name: summarize_table_duckdb
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
version: "1.1.0"
|
||||
purity: impure
|
||||
signature: "def summarize_table_duckdb(db_path: str, table: str, high_card_ratio: float = 0.9) -> dict"
|
||||
description: "Perfila una tabla DuckDB en una sola pasada SQL (SUMMARIZE, push-down sin traer filas a RAM) y devuelve el esqueleto de un TableProfile con el perfil base por columna. Corazon del grupo eda: base barata sobre la que otras funciones anaden lo estadistico fino (skew/kurtosis/histograma sobre muestra)."
|
||||
@@ -64,6 +64,7 @@ else:
|
||||
- **`distinct_count` exacto para tablas <=200k filas, aproximado+capado por encima**: `SUMMARIZE` usa HyperLogLog (`approx_unique`), que SOBREESTIMA y en tablas pequenas puede reportar mas distintos que filas (inflando `unique_pct` por encima de 1.0 y disparando flags `possible_id` falsos). Por eso, para `n_rows <= 200000` la funcion calcula `COUNT(DISTINCT)` EXACTO en una sola query combinada (barata) y usa ese valor. Para tablas mas grandes mantiene `approx_unique` pero lo CAPA a `n_rows` (`distinct_count = min(approx_unique, n_rows)`). En ambos casos `unique_pct = min(distinct_count / n_rows, 1.0)`, asi que `distinct_count` nunca supera las filas ni `unique_pct` pasa de 1.0. Los flags `possible_id` / `high_cardinality` derivan de ese `distinct_count` ya corregido (exacto y fiable por debajo de 200k filas; aproximado y conservador por encima).
|
||||
- **`SUMMARIZE` NO da skew, kurtosis ni histograma**, ni percentiles finos (p1/p5/p95/p99), moda, outliers, correlaciones, key_candidates ni quality_score. Esas claves quedan en `None`/`[]` a proposito: las rellena otra funcion del grupo `eda` sobre una muestra. El sub-dict `numeric` solo trae min, max, mean, std, p25, p50, p75.
|
||||
- **`SUMMARIZE.count` es el total de filas, no el no-nulo**: la funcion deriva el `count` no-nulo del ColumnProfile como `n_rows - null_count` (con `null_count` redondeado de `null_percentage`).
|
||||
- **`duplicate_rows`/`duplicate_pct` se pueblan push-down** (desde v1.1.0) con `count(*)` sobre `SELECT DISTINCT *` (sin traer filas a RAM): `duplicate_rows = n_rows - filas_distintas`, `duplicate_pct` en fraccion 0-1. Habilitan la dimension de unicidad de registro del score de dataset (`profile_table` paso 6). Si la tabla tiene tipos no comparables con `DISTINCT` (BLOB/LIST/MAP) la query degrada y ambas vuelven a `None` (renormaliza el score a solo `cell_quality`).
|
||||
- **min/max/avg/std/q25/q50/q75 vienen como strings** desde DuckDB; se convierten a float (None si la columna no es numerica).
|
||||
- **Requiere DuckDB 1.5.2** (columnas de `SUMMARIZE` validadas con esa version: column_name, column_type, min, max, approx_unique, avg, std, q25, q50, q75, count, null_percentage).
|
||||
- **El identificador de tabla se interpola** (no parametrizable en `SUMMARIZE`): por eso se valida contra `^[A-Za-z_][A-Za-z0-9_]*$` antes de citarlo. Un nombre invalido (p.ej. con `;` o espacios) devuelve `{status:'error'}` sin tocar la base.
|
||||
|
||||
@@ -196,6 +196,21 @@ def summarize_table_duckdb(
|
||||
sum(c["null_pct"] for c in columns) / len(columns) if columns else 0.0
|
||||
)
|
||||
|
||||
# Unicidad de registro: filas duplicadas via COUNT de filas distintas
|
||||
# push-down (DISTINCT *), sin traer filas a RAM. Habilita la dimension
|
||||
# de uniqueness del score de dataset (1 - duplicate_pct). Degrada a None
|
||||
# si la tabla tiene tipos no comparables con DISTINCT (BLOB/LIST/MAP).
|
||||
duplicate_rows = None
|
||||
duplicate_pct = None
|
||||
if n_rows > 0:
|
||||
dup_res = duckdb_query_readonly(
|
||||
db_path, f"SELECT count(*) AS c FROM (SELECT DISTINCT * FROM {quoted})"
|
||||
)
|
||||
if dup_res["status"] == "ok" and dup_res["rows"]:
|
||||
distinct_rows = int(dup_res["rows"][0]["c"])
|
||||
duplicate_rows = max(0, n_rows - distinct_rows)
|
||||
duplicate_pct = duplicate_rows / n_rows # fraccion 0-1
|
||||
|
||||
profile = {
|
||||
"table": table,
|
||||
"source": "duckdb",
|
||||
@@ -203,8 +218,8 @@ def summarize_table_duckdb(
|
||||
"n_rows": n_rows,
|
||||
"n_cols": len(columns),
|
||||
"size_bytes": None,
|
||||
"duplicate_rows": None,
|
||||
"duplicate_pct": None,
|
||||
"duplicate_rows": duplicate_rows,
|
||||
"duplicate_pct": duplicate_pct,
|
||||
"constant_cols": constant_cols,
|
||||
"all_null_cols": all_null_cols,
|
||||
"null_cell_pct": null_cell_pct,
|
||||
|
||||
@@ -54,6 +54,30 @@ def test_shape_y_metadatos_tabla(db):
|
||||
assert profile["correlations"] is None
|
||||
|
||||
|
||||
def test_duplicate_pct_sin_duplicados(db):
|
||||
"""Tabla con todas las filas distintas: duplicate_pct = 0, no None."""
|
||||
profile = summarize_table_duckdb(db, "ventas")["profile"]
|
||||
assert profile["duplicate_rows"] == 0
|
||||
assert profile["duplicate_pct"] == 0.0
|
||||
|
||||
|
||||
def test_duplicate_pct_con_duplicados(tmp_path):
|
||||
"""Filas repetidas: duplicate_rows/duplicate_pct se pueblan push-down."""
|
||||
path = str(tmp_path / "dups.duckdb")
|
||||
con = duckdb.connect(path)
|
||||
con.execute("CREATE TABLE t (a INTEGER, b VARCHAR)")
|
||||
# 5 filas, 2 de ellas idénticas a otras -> 2 duplicadas sobre 5 = 0.4.
|
||||
con.execute(
|
||||
"INSERT INTO t VALUES "
|
||||
"(1,'x'), (2,'y'), (1,'x'), (3,'z'), (2,'y')"
|
||||
)
|
||||
con.close()
|
||||
profile = summarize_table_duckdb(path, "t")["profile"]
|
||||
assert profile["n_rows"] == 5
|
||||
assert profile["duplicate_rows"] == 2
|
||||
assert profile["duplicate_pct"] == 0.4
|
||||
|
||||
|
||||
def test_column_profile_shape(db):
|
||||
profile = summarize_table_duckdb(db, "ventas")["profile"]
|
||||
by_name = {c["name"]: c for c in profile["columns"]}
|
||||
|
||||
@@ -4,7 +4,7 @@ kind: pipeline
|
||||
lang: py
|
||||
domain: pipelines
|
||||
purity: impure
|
||||
version: "1.0.0"
|
||||
version: "1.1.0"
|
||||
signature: "def profile_table(db_path: str, table: str, backend: str = \"duckdb\", sample: int = 5000, run_models: bool = False, run_llm: bool = False, run_series: bool = False, emit_pdf: bool = False, emit_automatic: bool = False, report_dir: str = \"reports\", write_report: bool = True) -> dict"
|
||||
description: "Orquestador one-shot del grupo de capacidad eda: perfila UNA tabla (DuckDB o PostgreSQL) end-to-end componiendo las funciones del grupo (perfil base SQL + muestreo read-only + inferencia semantica + promocion de tipo + estadistica numerica/categorica + score de calidad + correlaciones con correccion FDR + re-expresion de Tukey + avisos exploratorios) y, opcional, modelos baratos (run_models), interpretacion LLM (run_llm) y analisis de serie temporal por columna (run_series: estacionariedad ADF+KPSS, ACF/PACF, STL, retornos). Emite el TableProfile completo mas (opcional) report markdown + JSON sidecar + PDF movil (emit_pdf). Es la composicion canonica para hazme un EDA de esta tabla."
|
||||
tags: [eda, duckdb, postgres, profiling, data-quality, pipeline, dataops, timeseries]
|
||||
@@ -114,3 +114,12 @@ para auditar la calidad de una tabla ya productiva. Reemplaza orquestar a mano
|
||||
Formatos exoticos pueden descartarse silenciosamente del calculo numerico.
|
||||
- `db_path` debe existir: DuckDB read-only NO crea la base. El muestreo usa el
|
||||
sandbox por defecto de `duckdb_query_readonly` (sin acceso a FS/red).
|
||||
- **Score de calidad (report 2046, desde v1.1.0).** Paso 5: cada columna recibe
|
||||
`quality_score` de `column_quality_score` con la formula 60/40
|
||||
(completeness/validity); al promocionar texto a numero/fecha se expone
|
||||
`col["validity_rate"]` (parse rate de la muestra) para alimentar la dimension
|
||||
validity. Paso 6: el score de dataset NO es la media simple — es
|
||||
`100 * (0.85*cell_quality + 0.15*row_uniqueness)`, donde
|
||||
`cell_quality = media(score_col/100)` y `row_uniqueness = 1 - duplicate_pct`.
|
||||
Si `duplicate_pct` es `None` (backend sin calcularlo) el score se renormaliza
|
||||
a solo `cell_quality`. Los outliers NO bajan el score (van a `observations`).
|
||||
|
||||
@@ -477,9 +477,18 @@ def profile_table(
|
||||
if vals and (len(ok) / len(vals)) >= _PROMOTE_MIN_PARSE:
|
||||
col["inferred_type"] = "numeric"
|
||||
inferred = "numeric"
|
||||
# Tasa de parseo real de la muestra: alimenta la
|
||||
# dimension validity de column_quality_score (fraccion
|
||||
# de valores conformes al tipo numerico promovido).
|
||||
col["validity_rate"] = len(ok) / len(vals)
|
||||
elif semantic in _DATETIME_SEMANTIC:
|
||||
col["inferred_type"] = "datetime"
|
||||
inferred = "datetime"
|
||||
# Tasa de parseo de la muestra a fecha (mismo papel que el
|
||||
# parse rate numerico) para la dimension validity.
|
||||
parsed_dt = [_to_ordinal_days(v) for v in vals]
|
||||
ok_dt = [d for d in parsed_dt if d is not None]
|
||||
col["validity_rate"] = (len(ok_dt) / len(vals)) if vals else None
|
||||
|
||||
# 4) Enriquecer segun el inferred_type final.
|
||||
if inferred == "numeric":
|
||||
@@ -506,11 +515,36 @@ def profile_table(
|
||||
# 5) Score de calidad por columna.
|
||||
col["quality_score"] = column_quality_score(col).get("score")
|
||||
|
||||
# 6) Score agregado de la tabla (media de columnas).
|
||||
# 6) Score agregado de la tabla (report 2046): NO media simple.
|
||||
# cell_quality = media de los scores de columna, en [0,1].
|
||||
# row_uniqueness = 1 - duplicate_pct (unicidad de registro).
|
||||
# score = 100 * (0.85*cell_quality + 0.15*row_uniqueness).
|
||||
# Renormaliza a solo cell_quality si duplicate_pct no se pudo calcular.
|
||||
scores = [
|
||||
c["quality_score"] for c in cols if c.get("quality_score") is not None
|
||||
]
|
||||
prof["quality_score"] = round(sum(scores) / len(scores), 1) if scores else None
|
||||
if scores:
|
||||
cell_quality = (sum(scores) / len(scores)) / 100.0
|
||||
dup_pct = prof.get("duplicate_pct")
|
||||
if dup_pct is not None:
|
||||
try:
|
||||
d = float(dup_pct)
|
||||
except (TypeError, ValueError):
|
||||
d = None
|
||||
else:
|
||||
d = None
|
||||
if d is not None:
|
||||
# Tolerar escala 0-100 por si algun backend la entrega asi.
|
||||
if d > 1.0:
|
||||
d = d / 100.0
|
||||
row_uniqueness = max(0.0, min(1.0, 1.0 - d))
|
||||
prof["quality_score"] = round(
|
||||
100.0 * (0.85 * cell_quality + 0.15 * row_uniqueness), 1
|
||||
)
|
||||
else:
|
||||
prof["quality_score"] = round(100.0 * cell_quality, 1)
|
||||
else:
|
||||
prof["quality_score"] = None
|
||||
|
||||
# 7) Candidatos a clave.
|
||||
key_candidates = []
|
||||
|
||||
@@ -1,9 +1,10 @@
|
||||
"""render_automatic_eda — EDA completo one-shot: perfil → ctx → PDF + PPTX.
|
||||
"""render_automatic_eda — EDA completo one-shot: perfil → ctx → PDF + PPTX + MD.
|
||||
|
||||
Pipeline impuro del grupo de capacidad `eda`. Dada UNA tabla DuckDB (o
|
||||
PostgreSQL), produce el informe AutomaticEDA COMPLETO en sus dos formatos a la
|
||||
vez (PDF móvil A5 + PPTX 16:9) con los 11 capítulos POBLADOS, en una sola
|
||||
llamada. Compone, sin reimplementar su lógica, cuatro funciones del registry:
|
||||
PostgreSQL), produce el informe AutomaticEDA COMPLETO en sus tres formatos a la
|
||||
vez (PDF móvil A5 + PPTX 16:9 + Markdown autocontenido para pegar a un LLM) con
|
||||
los capítulos POBLADOS, en una sola llamada. Compone, sin reimplementar su
|
||||
lógica, varias funciones del registry:
|
||||
|
||||
- profile_table : perfila la tabla end-to-end (TableProfile agregado),
|
||||
opcionalmente con modelos baratos y análisis de serie.
|
||||
@@ -12,8 +13,11 @@ llamada. Compone, sin reimplementar su lógica, cuatro funciones del registry:
|
||||
modelos/geo, timeseries_raw para series, geo_points
|
||||
para el mapa, db_path/table para la agregación
|
||||
push-down). Sin él, esos capítulos degradan.
|
||||
- render_automatic_eda_pdf : renderiza el documento por capítulos a PDF.
|
||||
- render_automatic_eda_pptx : renderiza el mismo documento a PPTX.
|
||||
- render_automatic_eda_pdf : renderiza el documento por capítulos a PDF.
|
||||
- render_automatic_eda_pptx : renderiza el mismo documento a PPTX.
|
||||
- render_automatic_eda_markdown : serializa el mismo documento a Markdown
|
||||
autocontenido (texto + tablas markdown, sin
|
||||
binarios) para incorporar a un LLM.
|
||||
|
||||
El TableProfile agregado basta para portada/overview/distribuciones/calidad/
|
||||
correlación, pero los capítulos `modelos`, `timeseries`, `geospatial` y
|
||||
@@ -32,6 +36,7 @@ from datetime import datetime, timezone
|
||||
|
||||
from datascience import (
|
||||
build_eda_render_ctx,
|
||||
render_automatic_eda_markdown,
|
||||
render_automatic_eda_pdf,
|
||||
render_automatic_eda_pptx,
|
||||
run_eda_models,
|
||||
@@ -93,6 +98,7 @@ def render_automatic_eda(
|
||||
out_dir: str = "reports",
|
||||
basename: str = None,
|
||||
ctx_extra: dict = None,
|
||||
emit_md: bool = True,
|
||||
) -> dict:
|
||||
"""Perfila una tabla y emite el informe AutomaticEDA completo (PDF + PPTX).
|
||||
|
||||
@@ -140,13 +146,19 @@ def render_automatic_eda(
|
||||
ctx_extra: dict opcional con claves de presentación/contexto extra que se
|
||||
mezclan en el ctx (p.ej. dataset_name, description, source_origin).
|
||||
No pisan las claves de datos calculadas por build_eda_render_ctx.
|
||||
emit_md: además del PDF y el PPTX, emite un Markdown autocontenido del
|
||||
MISMO documento por capítulos (texto plano + tablas markdown, sin
|
||||
binarios), pensado para pegar a un LLM. Default True. La ruta sale en
|
||||
la clave de retorno ``aeda_md_path``. No altera las demás salidas.
|
||||
|
||||
Returns:
|
||||
dict (nunca lanza). En éxito::
|
||||
|
||||
{"status": "ok", "pdf_path": str, "pptx_path": str,
|
||||
"manifest_path": str|None, "n_pages": int, "n_slides": int,
|
||||
"pdf_note": str, "pptx_note": str, "profile": <TableProfile>}
|
||||
"aeda_md_path": str|None, "manifest_path": str|None,
|
||||
"n_pages": int, "n_slides": int, "md_chars": int|None,
|
||||
"pdf_note": str, "pptx_note": str, "md_note": str|None,
|
||||
"profile": <TableProfile>}
|
||||
|
||||
En error: {"status": "error", "error": str}.
|
||||
"""
|
||||
@@ -243,15 +255,26 @@ def render_automatic_eda(
|
||||
rpdf = render_automatic_eda_pdf(prof, pdf_path, meta) or {}
|
||||
rpptx = render_automatic_eda_pptx(prof, pptx_path, meta) or {}
|
||||
|
||||
# Salida Markdown autocontenida (mismo documento por capítulos) para
|
||||
# pegar a un LLM. Aditiva: no afecta a PDF/PPTX/manifest. dict-no-throw.
|
||||
rmd = {}
|
||||
md_path = None
|
||||
if emit_md:
|
||||
md_path = os.path.join(out_dir, base + ".md")
|
||||
rmd = render_automatic_eda_markdown(prof, md_path, meta) or {}
|
||||
|
||||
return {
|
||||
"status": "ok",
|
||||
"pdf_path": rpdf.get("path"),
|
||||
"pptx_path": rpptx.get("path"),
|
||||
"aeda_md_path": rmd.get("path"),
|
||||
"manifest_path": rpdf.get("manifest_path"),
|
||||
"n_pages": rpdf.get("n_pages"),
|
||||
"n_slides": rpptx.get("n_slides"),
|
||||
"md_chars": rmd.get("n_chars"),
|
||||
"pdf_note": rpdf.get("note"),
|
||||
"pptx_note": rpptx.get("note"),
|
||||
"md_note": rmd.get("note"),
|
||||
"profile": prof,
|
||||
}
|
||||
except Exception as e: # noqa: BLE001 — dict-no-throw: degradar, nunca lanzar.
|
||||
|
||||
Reference in New Issue
Block a user