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@@ -27,6 +27,7 @@ Página madre del grupo: `docs/capabilities/eda.md` (léela primero para cargar
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- `--series` → `run_series=True` (estacionariedad ADF+KPSS, ACF/PACF, STL, retornos por columna numérica).
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- `--pdf` → `emit_pdf=True` (PDF A5 legacy de `render_eda_pdf`, legible en móvil).
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- `--legacy-only` → emite SOLO el PDF legacy (sin AutomaticEDA), para casos en que solo se quiera el PDF rápido.
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- `--lite` / `--bajo-consumo` → `render_automatic_eda(profile_level="lite")`: EDA barato y rápido (CI, vistazo previo, máquina sin GPU/red). Apaga LLM y serie temporal y limita los modelos a **PCA + normalidad** (sin KMeans ni IsolationForest, lo caro en CPU), con `sample` reducido. `--full` → `profile_level="full"` (standard + narrativa LLM). Por defecto `profile_level="standard"` (comportamiento histórico). Un flag explícito (`--llm`, `--models`, ...) prima sobre el preset.
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Por defecto, **un EDA completo emite SIEMPRE el informe AutomaticEDA en sus dos formatos: PDF (A5 móvil) Y PPTX (16:9 para compartir)** con los 11 capítulos poblados (portada, overview, distribuciones, calidad, correlaciones, modelos, series, geoespacial, agregación, interpretación LLM). Usa el pipeline `render_automatic_eda` (o `profile_table(emit_automatic=True)`), que activa `run_models` y `run_series` para que los capítulos de modelos/series/geoespacial/agregación salgan poblados. Deja `run_llm` para cuando el usuario lo pida o interese la interpretación semántica + narrativa por capítulo (es la única parte que gasta tokens del modelo).
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@@ -50,7 +51,8 @@ from pipelines.render_automatic_eda import render_automatic_eda
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# tablas de agregación). run_llm=True añade la narrativa LLM por capítulo.
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r = render_automatic_eda(
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"/ruta/datos.duckdb", "ventas",
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run_models=True, run_series=True, run_llm=False, out_dir="reports",
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profile_level="standard", # "lite" = bajo consumo CPU/LLM; "full" = + narrativa LLM
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out_dir="reports",
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)
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print("status:", r["status"])
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print("pdf: ", r["pdf_path"], "(", r["n_pages"], "págs )")
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@@ -1,6 +1,6 @@
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---
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description: Muestra la flota de Claudes vivos (sessionId + objetivo + estado) y, con argumento, salta con foco a esa conversación dentro de la sesión tmux fleet.
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argument-hint: "[texto|sessionId|PID para saltar — vacío = listar la flota]"
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description: Muestra la flota de Claudes vivos (sessionId + objetivo + estado) y, con argumento, salta con foco a esa conversación dentro de la sesión tmux fleet. `/fleet show` trae la TUI al contexto tmux actual.
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argument-hint: "[show | texto|sessionId|PID para saltar — vacío = listar la flota]"
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---
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# /fleet — ver y navegar la flota de Claudes
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@@ -33,9 +33,32 @@ cd "${FN_REGISTRY_ROOT:-$HOME/fn_registry}/apps/fleetview" && go build -o fleetv
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- la sesión actual / orquestador si la puedes identificar (su `session_id` coincide con el de quien invoca).
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4. Si la lista está vacía, indícalo y sugiere que el perfil fleet podría no estar activo (revisar `$FLEET_SOCKET` y que la sesión tmux exista).
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### `show` → traer la TUI al contexto tmux actual
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Si `$ARGUMENTS` es exactamente `show` (alias `open`/`attach`), el usuario quiere
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volver a ver el panel FleetView en el contexto/pane actual sin abrir ninguna
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ventana ni arrancar una flota nueva. Ejecuta:
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```bash
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"${FN_REGISTRY_ROOT:-$HOME/fn_registry}/apps/fleetview/fleetview" show
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```
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Comportamiento (decidido por la app, no abre terminal externa):
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- **dentro de tmux con la flota viva** → `select-window` de la window `console`
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del socket fleet (trae la TUI al frente; no abre nada).
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- **fuera de tmux** → `attach` a la sesión fleet en la terminal actual (la reutiliza).
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||||
- **sin flota viva** → error claro, exit 1, no abre nada (sugiere arrancarla con
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`fleetclaude`).
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||||
Es el equivalente del comportamiento de `fleetclaude` sin args invocado dentro de
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una flota viva (reuse de contexto): úsalo cuando ya tengas una flota corriendo y
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solo quieras recuperar la vista del panel. Para abrir una flota NUEVA aparte, usa
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`fleetclaude --new` (no este comando).
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||||
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### Con argumentos → saltar con foco
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El usuario quiere que la interfaz tmux salte a una conversación concreta. `$ARGUMENTS` es el query: texto del objetivo, prefijo de `sessionId`, o PID.
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El usuario quiere que la interfaz tmux salte a una conversación concreta. `$ARGUMENTS` es el query: texto del objetivo, prefijo de `sessionId`, o PID (cualquier valor que no sea `show`).
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||||
1. Ejecuta:
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```bash
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@@ -3,10 +3,10 @@ name: launch_fleetclaude
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kind: function
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lang: bash
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domain: infra
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version: "1.6.0"
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version: "1.7.0"
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purity: impure
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signature: "launch_fleetclaude [--cwd <dir>] [--bin <path>] [--session <name>] [--reuse] [--cols <n>]"
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description: "Entrypoint de FleetView: abre una ventana de terminal con una sesion tmux (socket aislado por perfil) de dos panes (TUI fleetview a la izquierda, claude --dangerously-skip-permissions a la derecha) para centralizar la flota de Claudes. La terminal se AUTO-DETECTA sin config por PC: kitty si esta instalado y hay display ($DISPLAY/$WAYLAND_DISPLAY), si no Windows Terminal (wt.exe) en WSL adjuntando via wsl.exe. El pane de la TUI corre dentro del bucle supervisor supervise_fleetview_tui, que la relanza si muere (crash/panic/kill), asi el panel de control NUNCA se pierde. Soporta PERFILES multiples: sin --session/--reuse cada invocacion abre un perfil nuevo (fleet, fleet2, fleet3, ...) con su propia flota; inyecta FLEET_SOCKET/FLEET_SESSION a la TUI para que cada panel vea solo sus Claudes. Instala atajos alt+flechas/alt+enter/alt+n que controlan la TUI desde cualquier pane, y fija el ancho del sidebar con hooks."
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signature: "launch_fleetclaude [--cwd <dir>] [--bin <path>] [--session <name>] [--reuse] [--new] [--cols <n>]"
|
||||
description: "Entrypoint de FleetView: abre una ventana de terminal con una sesion tmux (socket aislado por perfil) de dos panes (TUI fleetview a la izquierda, claude --dangerously-skip-permissions a la derecha) para centralizar la flota de Claudes. REUSO DE CONTEXTO: si se invoca DENTRO de una flota tmux viva (su window 'console') sin --new, NO abre ventana ni crea un perfil nuevo; trae la TUI al pane/contexto actual (equivale a 'fleetview show'). El flag --new fuerza una flota+ventana nueva aunque estes en tmux. La terminal se AUTO-DETECTA sin config por PC: kitty si esta instalado y hay display ($DISPLAY/$WAYLAND_DISPLAY), si no Windows Terminal (wt.exe) en WSL adjuntando via wsl.exe. El pane de la TUI corre dentro del bucle supervisor supervise_fleetview_tui, que la relanza si muere (crash/panic/kill), asi el panel de control NUNCA se pierde. Soporta PERFILES multiples: fuera de tmux, o con --new, cada invocacion abre un perfil nuevo (fleet, fleet2, fleet3, ...) con su propia flota; inyecta FLEET_SOCKET/FLEET_SESSION a la TUI para que cada panel vea solo sus Claudes. Instala atajos alt+flechas/alt+enter/alt+n que controlan la TUI desde cualquier pane, y fija el ancho del sidebar con hooks."
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||||
tags: [claude-fleet, infra, kitty, tmux, claude, fleetview, launcher, wsl, windows-terminal]
|
||||
params:
|
||||
- name: --cwd
|
||||
@@ -14,12 +14,14 @@ params:
|
||||
- name: --bin
|
||||
desc: "Ruta al binario de la TUI fleetview que corre en el pane izquierdo. Opcional. Default: <repo>/apps/fleetview/fleetview. Si no es ejecutable, el pane izquierdo muestra un mensaje de como compilarla y deja una shell viva."
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||||
- name: --session
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||||
desc: "Fija el perfil (socket+sesion tmux comparten nombre) por nombre exacto; reutiliza el existente si ya vive (idempotente sobre ese nombre). Opcional. Sin esta opcion, el perfil se elige automaticamente (primer nombre libre de la secuencia fleet, fleet2, ...)."
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||||
desc: "Fija el perfil (socket+sesion tmux comparten nombre) por nombre exacto; reutiliza el existente si ya vive (idempotente sobre ese nombre). Opcional. Sin esta opcion, el perfil se elige automaticamente (primer nombre libre de la secuencia fleet, fleet2, ...). Invocado DENTRO de tmux con un nombre DISTINTO al de la flota actual equivale a --new (pides otra flota: ventana nueva, sin reuse de contexto)."
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||||
- name: --reuse
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||||
desc: "Reattach al perfil principal 'fleet' en vez de abrir uno nuevo. Opcional. Recupera el comportamiento idempotente clasico (volver a invocar NO duplica la flota, reusa la existente)."
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||||
- name: --new
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||||
desc: "Fuerza una flota NUEVA en una ventana NUEVA (kitty/wt.exe) incluso estando dentro de una flota tmux. Opcional. Es la via explicita para abrir una FleetView aparte; sin este flag, invocado dentro de una flota viva se reusa el contexto actual (no abre ventana ni crea perfil)."
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||||
- name: --cols
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||||
desc: "Ancho en columnas del pane izquierdo (la TUI). Opcional. Default: 40."
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||||
output: "Crea/reutiliza una sesion tmux detached con dos panes y lanza una ventana de terminal 'FleetView' adjunta a ella (kitty o Windows Terminal segun auto-deteccion), desacoplada del shell padre. Imprime el estado por stdout. Sin valor de retorno; exit 0 en exito."
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||||
output: "Caso reuse de contexto (dentro de una flota tmux viva, sin --new): trae la TUI al pane/contexto actual con select-window de la window 'console' (o 'fleetview show' si el binario existe) y retorna 0, sin abrir nada. Caso ventana-nueva (fuera de tmux, o con --new): crea/reutiliza una sesion tmux detached con dos panes y lanza una ventana de terminal 'FleetView' adjunta (kitty o Windows Terminal segun auto-deteccion), desacoplada del shell padre. Imprime el estado por stdout. Sin valor de retorno; exit 0 en exito, !=0 con mensaje claro si no hay terminal ni contexto que reusar."
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||||
uses_functions:
|
||||
- supervise_fleetview_tui_bash_infra
|
||||
uses_types: []
|
||||
@@ -36,32 +38,44 @@ file_path: "bash/functions/infra/launch_fleetclaude.sh"
|
||||
## Ejemplo
|
||||
|
||||
```bash
|
||||
# Via fn run (resuelve por nombre o ID):
|
||||
fn run launch_fleetclaude
|
||||
# DENTRO de una flota tmux viva (p. ej. en el pane del orquestador): reusa el
|
||||
# contexto, trae la TUI al pane actual. NO abre ventana ni crea perfil nuevo.
|
||||
fleetclaude
|
||||
|
||||
# Perfil nuevo automatico (fleet la 1a vez; fleet2, fleet3, ... si ya hay uno):
|
||||
launch_fleetclaude
|
||||
# FUERA de tmux: perfil nuevo automatico (fleet la 1a vez; fleet2, ... si ya hay
|
||||
# uno) en una ventana de terminal nueva, reutilizando la terminal actual (attach):
|
||||
fleetclaude
|
||||
|
||||
# Forzar una flota+ventana NUEVA aunque estes dentro de una flota tmux:
|
||||
fleetclaude --new
|
||||
|
||||
# Reattach a la flota principal 'fleet' (comportamiento idempotente clasico):
|
||||
launch_fleetclaude --reuse
|
||||
fleetclaude --reuse
|
||||
|
||||
# Perfil con nombre fijo y ancho de pane personalizado:
|
||||
launch_fleetclaude --session trabajo --cols 50
|
||||
fleetclaude --session trabajo --cols 50
|
||||
|
||||
# Via fn run (resuelve por nombre o ID):
|
||||
fn run launch_fleetclaude
|
||||
```
|
||||
|
||||
Tras invocarlo aparece una ventana de terminal titulada `FleetView (<perfil>)` con dos
|
||||
panes lado a lado: a la izquierda la TUI `fleetview`, a la derecha una sesion de
|
||||
`claude --dangerously-skip-permissions`. Cada perfil es un socket+sesion tmux
|
||||
aislados con su propia flota: puedes tener varias FleetView abiertas a la vez.
|
||||
Por defecto, volver a invocarlo abre un perfil NUEVO (no reusa); usa `--reuse`
|
||||
o `--session <nombre>` para volver a una flota concreta.
|
||||
Dentro de una flota viva, `fleetclaude` sin args reusa el contexto (la window
|
||||
`console` pasa al frente). Fuera de tmux (o con `--new`) aparece una ventana de
|
||||
terminal titulada `FleetView (<perfil>)` con dos panes lado a lado: a la izquierda
|
||||
la TUI `fleetview`, a la derecha una sesion de `claude --dangerously-skip-permissions`.
|
||||
Cada perfil es un socket+sesion tmux aislados con su propia flota: puedes tener
|
||||
varias FleetView abiertas a la vez con `--new`.
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Usala cuando quieras un unico punto de entrada a la flota de Claudes en vez de
|
||||
N ventanas kitty sueltas: lanzas `fleetclaude` y tienes la TUI de control y un
|
||||
Claude listo para trabajar en la misma ventana. Tipico al empezar la jornada o
|
||||
al retomar el trabajo en el repo `fn_registry`.
|
||||
al retomar el trabajo en el repo `fn_registry`. Si **ya estas dentro de una
|
||||
flota** (en el pane del orquestador) y solo quieres volver a ver la TUI, lanza
|
||||
`fleetclaude` sin args: trae el panel al contexto actual sin abrir otra ventana
|
||||
ni arrancar una flota duplicada. Usa `--new` solo cuando quieras DELIBERADAMENTE
|
||||
una segunda flota aparte.
|
||||
|
||||
## Gotchas
|
||||
|
||||
@@ -87,10 +101,27 @@ al retomar el trabajo en el repo `fn_registry`.
|
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funciona en un PC con kitty y en otro WSL sin kitty, cada uno elige su
|
||||
terminal. Causa raiz del sintoma "se lanza la flota pero no se ve": kitty no
|
||||
instalado en WSL hacia que la sesion tmux se creara sin ventana que la mostrara.
|
||||
- **Dentro de tmux abre ventana nueva**: si invocas `fleetclaude` desde dentro de
|
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una sesion tmux (`$TMUX` definido), NO hace `attach` anidado (rompe / avisa de
|
||||
nesting); cae a la ruta ventana-nueva (auto-deteccion de terminal). Fuera de
|
||||
tmux y con TTY, reutiliza la terminal actual con `exec tmux attach`.
|
||||
- **Dentro de una flota tmux viva: reuse de contexto (no ventana nueva)**: si
|
||||
invocas `fleetclaude` sin `--new` desde dentro de una flota fleetview viva
|
||||
(`$TMUX` definido y el socket actual tiene una sesion homonima con window
|
||||
`console`), NO abre ventana ni crea un perfil `fleetN+1`: trae la TUI al pane
|
||||
actual (`fleetview show`, o `tmux -L <perfil> select-window -t <perfil>:console`
|
||||
si el binario no esta compilado) y retorna 0. El perfil de la flota actual se
|
||||
deriva de `$TMUX` (basename del socket = nombre `-L`), senal fiable aunque
|
||||
`$FLEET_SOCKET` venga vacio (ver `detect_fleet_context`). **`--new`** fuerza el
|
||||
comportamiento clasico (flota+ventana nueva); pasar `--session <otro>` distinto
|
||||
al perfil actual equivale a `--new` implicito. Fuera de tmux y con TTY, reutiliza
|
||||
la terminal actual con `exec tmux attach` (nunca `attach` anidado dentro de
|
||||
tmux). Sin TTY ni contexto que reusar (atajo de escritorio/cron) cae a la ruta
|
||||
ventana-nueva. Antes de este fix (v1.6.0 y anteriores) cualquier `fleetclaude`
|
||||
dentro de tmux abria una kitty nueva y un socket `fleetN+1` — el sintoma que
|
||||
acumulaba 6+ sockets `fleet*`.
|
||||
- **`local x` unbound bajo `set -u`**: el archivo corre con `set -euo pipefail`.
|
||||
`local left_pane right_pane` dejaba esas vars *unbound* (no vacias), asi que la
|
||||
rama "reutilizar sesion existente" (`--reuse`/`--session <vivo>`) reventaba con
|
||||
`left_pane: unbound variable` al evaluar `[[ -z "$left_pane" ]]`. Se inicializan
|
||||
explicitamente a `""` (`local left_pane="" right_pane=""`). Si tocas estas vars,
|
||||
no vuelvas a declararlas sin valor.
|
||||
- **kitty detached (setsid)**: la ventana kitty se lanza con `setsid ... &` para
|
||||
sobrevivir al cierre de la terminal que la invoco. La ventana de Windows
|
||||
Terminal (wt.exe) ya es un proceso Windows independiente del arbol Linux, asi
|
||||
@@ -128,15 +159,29 @@ al retomar el trabajo en el repo `fn_registry`.
|
||||
- **Ancho del sidebar via hooks**: `client-resized` y `window-layout-changed`
|
||||
re-fijan el pane 0 (TUI) a `--cols` columnas, porque el `attach` de kitty y el
|
||||
conmutar de Claude redistribuyen el espacio.
|
||||
- **tmux siempre; terminal (kitty/wt.exe) solo sin TTY**: `tmux` es obligatorio
|
||||
(aborta != 0 si falta). Una terminal nueva (kitty o Windows Terminal) solo se
|
||||
necesita en la ruta sin-TTY (dentro de tmux, atajo de escritorio, cron, script),
|
||||
donde abre una ventana nueva. Invocado desde una terminal interactiva fuera de
|
||||
tmux (el caso normal del alias `fleetclaude`), reutiliza la terminal actual con
|
||||
`exec tmux attach` y no necesita ni kitty ni wt.exe.
|
||||
- **tmux siempre; terminal (kitty/wt.exe) solo en la ruta ventana-nueva**: `tmux`
|
||||
es obligatorio (aborta != 0 si falta). Una terminal nueva (kitty o Windows
|
||||
Terminal) solo se necesita en la ruta ventana-nueva: `--new`, o sin TTY ni flota
|
||||
viva que reusar (atajo de escritorio, cron, script). Dentro de una flota viva sin
|
||||
`--new` se reusa el contexto (ni kitty ni wt.exe). Invocado desde una terminal
|
||||
interactiva fuera de tmux (el caso normal del alias `fleetclaude`), reutiliza la
|
||||
terminal actual con `exec tmux attach` y tampoco necesita kitty ni wt.exe.
|
||||
|
||||
## Capability growth log
|
||||
|
||||
- v1.7.0 (2026-06-30) — **reuse de contexto dentro de la flota + flag `--new`**.
|
||||
Invocado sin `--new` desde dentro de una flota tmux viva (su window `console`),
|
||||
`fleetclaude` ya NO abre una kitty nueva ni crea un perfil `fleetN+1`: trae la
|
||||
TUI al pane/contexto actual (`fleetview show`, o `tmux -L <perfil> select-window
|
||||
-t <perfil>:console` como fallback sin binario) y retorna 0. El perfil actual se
|
||||
deriva de `$TMUX` (basename del socket); pasar `--session <otro>` distinto al
|
||||
actual equivale a `--new` implicito. Nuevo flag `--new` para forzar la ruta
|
||||
clasica (flota+ventana nueva) aun dentro de tmux. Fuera de tmux el comportamiento
|
||||
es intacto (`exec tmux attach` reutiliza la terminal). Arregla el sintoma de que
|
||||
lanzar `fleetclaude` dentro de una flota abria ventana kitty + socket nuevo
|
||||
(`fleet7`, `fleet8`, ...). Fix incidental: `local left_pane="" right_pane=""`
|
||||
(antes `local left_pane right_pane` reventaba con `unbound variable` bajo
|
||||
`set -u` al reutilizar una sesion existente).
|
||||
- v1.6.0 (2026-06-29) — **auto-deteccion de terminal (kitty ↔ Windows Terminal)**.
|
||||
La ruta ventana-nueva ya no asume kitty: elige terminal segun el host. kitty si
|
||||
esta instalado y hay display (`$DISPLAY`/`$WAYLAND_DISPLAY`); si no, en WSL abre
|
||||
|
||||
@@ -23,6 +23,7 @@ launch_fleetclaude() {
|
||||
local cols=52
|
||||
local explicit_session=0 # 1 si el usuario pasó --session <name> a mano
|
||||
local reuse=0 # 1 si el usuario pidió --reuse (reattach al perfil principal)
|
||||
local want_new=0 # 1 si el usuario pidió --new (forzar flota+ventana nueva)
|
||||
local T="" # socket tmux aislado; se fija al resolver el perfil
|
||||
|
||||
# -----------------------------------------------------------------------
|
||||
@@ -46,6 +47,9 @@ launch_fleetclaude() {
|
||||
--reuse)
|
||||
reuse=1
|
||||
;;
|
||||
--new)
|
||||
want_new=1
|
||||
;;
|
||||
--cols)
|
||||
shift
|
||||
cols="${1:-40}"
|
||||
@@ -62,6 +66,11 @@ Claudes). Sin --session ni --reuse, cada invocacion abre un perfil NUEVO: usa
|
||||
el primer nombre libre de la secuencia fleet, fleet2, fleet3, ... Asi puedes
|
||||
tener varias FleetView abiertas a la vez, cada una con su flota independiente.
|
||||
|
||||
REUSO DE CONTEXTO: si ya estas DENTRO de una flota tmux viva (p. ej. en el pane
|
||||
del orquestador), 'fleetclaude' sin args NO abre una ventana ni crea un perfil
|
||||
nuevo: trae la TUI al contexto/pane actual (equivale a 'fleetview show'). Para
|
||||
abrir explicitamente una flota aparte en una ventana nueva, usa --new.
|
||||
|
||||
Opciones:
|
||||
--cwd <dir> Directorio de trabajo de los panes.
|
||||
Default: raiz del repo fn_registry (derivada dinamicamente).
|
||||
@@ -69,13 +78,21 @@ Opciones:
|
||||
Default: <repo>/apps/fleetview/fleetview
|
||||
--session <name> Fija el perfil (socket+sesion) por nombre exacto; reutiliza
|
||||
el existente si ya esta vivo. Sin esta opcion, perfil auto.
|
||||
Si se invoca DENTRO de tmux con un nombre DISTINTO al de la
|
||||
flota actual, equivale a --new (pides otra flota).
|
||||
--reuse Reattach al perfil principal 'fleet' en vez de abrir uno
|
||||
nuevo (vuelve al comportamiento idempotente clasico).
|
||||
--new Fuerza una flota NUEVA en una ventana NUEVA (kitty/wt.exe),
|
||||
incluso dentro de tmux. Es la via explicita para tener una
|
||||
FleetView aparte; sin este flag, dentro de tmux se reusa el
|
||||
contexto actual.
|
||||
--cols <n> Ancho (columnas) del pane izquierdo. Default: 40.
|
||||
-h, --help Muestra esta ayuda.
|
||||
|
||||
Ejemplos:
|
||||
launch_fleetclaude # perfil nuevo (fleet, luego fleet2, ...)
|
||||
launch_fleetclaude # dentro de la flota: reusa el contexto;
|
||||
# fuera de tmux: perfil nuevo (fleet, ...)
|
||||
launch_fleetclaude --new # flota+ventana nueva aunque estes en tmux
|
||||
launch_fleetclaude --reuse # reattach a la flota principal 'fleet'
|
||||
launch_fleetclaude --session trabajo # perfil con nombre fijo 'trabajo'
|
||||
launch_fleetclaude --cwd ~/fn_registry --cols 50
|
||||
@@ -127,6 +144,45 @@ USAGE
|
||||
return 1
|
||||
fi
|
||||
|
||||
# -----------------------------------------------------------------------
|
||||
# REUSO DE CONTEXTO (sin --new): si ya estamos DENTRO de una flota tmux
|
||||
# viva, 'fleetclaude' sin args NO abre una ventana/terminal nueva ni crea
|
||||
# un perfil fleetN+1 — trae la TUI al contexto/pane actual, igual que
|
||||
# 'fleetview show'. El flag --new fuerza el comportamiento clasico (flota
|
||||
# nueva en ventana nueva); --reuse mantiene su semantica historica.
|
||||
#
|
||||
# El perfil de la flota actual se deriva de $TMUX (el basename del socket
|
||||
# es el nombre -L; senal fiable aunque $FLEET_SOCKET venga vacio, ver
|
||||
# detect_fleet_context). Si se paso --session con un nombre DISTINTO al
|
||||
# actual, es pedir OTRA flota -> se trata como --new implicito (no reusa).
|
||||
# "Flota viva" = el socket tiene una sesion homonima con una window
|
||||
# 'console' (la firma de una FleetView), no un tmux cualquiera.
|
||||
# -----------------------------------------------------------------------
|
||||
if [[ "$want_new" -eq 0 && "$reuse" -eq 0 && -n "${TMUX:-}" ]]; then
|
||||
local current_socket target_socket
|
||||
current_socket="$(basename "${TMUX%%,*}")"
|
||||
target_socket="$current_socket"
|
||||
[[ "$explicit_session" -eq 1 ]] && target_socket="$session"
|
||||
|
||||
if [[ "$target_socket" == "$current_socket" ]] \
|
||||
&& tmux -L "$current_socket" has-session -t "$current_socket" 2>/dev/null \
|
||||
&& tmux -L "$current_socket" list-windows -t "$current_socket" \
|
||||
-F '#{window_name}' 2>/dev/null | grep -qx console; then
|
||||
# Traer la TUI al contexto actual sin abrir nada nuevo. Preferimos
|
||||
# el binario (centraliza la politica en la app: 'fleetview show');
|
||||
# si no esta compilado, caemos a 'select-window' directo, que es lo
|
||||
# que 'show' hace por dentro dentro de tmux (cero dependencia).
|
||||
if [[ -x "$bin" ]] \
|
||||
&& FLEET_SOCKET="$current_socket" FLEET_SESSION="$current_socket" \
|
||||
"$bin" show 2>/dev/null; then
|
||||
return 0
|
||||
fi
|
||||
tmux -L "$current_socket" select-window -t "$current_socket":console
|
||||
echo "launch_fleetclaude: flota '$current_socket' viva; TUI traida al contexto actual (sin ventana nueva)."
|
||||
return 0
|
||||
fi
|
||||
fi
|
||||
|
||||
# -----------------------------------------------------------------------
|
||||
# Resolver el PERFIL (socket+sesion tmux comparten nombre).
|
||||
#
|
||||
@@ -200,7 +256,10 @@ USAGE
|
||||
# indice 1 y cualquier referencia a console.0 falla con
|
||||
# "can't find pane: 0". Los pane ID son estables e inmunes al base-index.
|
||||
# -----------------------------------------------------------------------
|
||||
local left_pane right_pane
|
||||
# Inicializadas a "" (no solo declaradas): bajo `set -u` una `local x` sin
|
||||
# valor queda *unbound*, y al reutilizar una sesion existente el `[[ -z
|
||||
# "$left_pane" ]]` de mas abajo reventaba con "unbound variable".
|
||||
local left_pane="" right_pane=""
|
||||
if $T has-session -t "$session" 2>/dev/null; then
|
||||
echo "launch_fleetclaude: la sesion tmux '$session' ya existe; reutilizandola."
|
||||
else
|
||||
|
||||
@@ -64,6 +64,7 @@ from .exploratory_caveats import exploratory_caveats
|
||||
from .render_eda_pdf import render_eda_pdf, render_eda_pdf_relational
|
||||
from .render_automatic_eda_pdf import render_automatic_eda_pdf
|
||||
from .render_automatic_eda_pptx import render_automatic_eda_pptx
|
||||
from .render_automatic_eda_markdown import render_automatic_eda_markdown
|
||||
from .detect_time_column import detect_time_column
|
||||
from .extract_timeseries_raw import extract_timeseries_raw
|
||||
from .build_eda_render_ctx import build_eda_render_ctx
|
||||
@@ -82,6 +83,7 @@ __all__ = [
|
||||
"resample_timeseries",
|
||||
"render_automatic_eda_pdf",
|
||||
"render_automatic_eda_pptx",
|
||||
"render_automatic_eda_markdown",
|
||||
"decode_qr_image",
|
||||
"adf_kpss_stationarity",
|
||||
"acf_pacf",
|
||||
|
||||
@@ -36,6 +36,7 @@ from .model import ( # noqa: F401
|
||||
from .chapters_registry import CHAPTER_ORDER, build_chapter, build_document # noqa: F401
|
||||
from .render_pdf_impl import render_pdf # noqa: F401
|
||||
from .render_pptx_impl import render_pptx # noqa: F401
|
||||
from .render_md_impl import render_md # noqa: F401
|
||||
|
||||
__all__ = [
|
||||
"ENGINE_NAME",
|
||||
@@ -60,4 +61,5 @@ __all__ = [
|
||||
"build_document",
|
||||
"render_pdf",
|
||||
"render_pptx",
|
||||
"render_md",
|
||||
]
|
||||
|
||||
@@ -89,6 +89,35 @@ _DEF_MAX_CARD = 20
|
||||
_DEF_MAX_MEASURES = 4
|
||||
_DEF_TOP_N = 12
|
||||
|
||||
# Glossary terms this chapter explains. Both appear in the always-rendered intro,
|
||||
# so they are registered and marked clickable whenever a collector is in ctx —
|
||||
# the canonical two-step pattern (see ``cat_distr``): ``glossary.add(key, label,
|
||||
# definition)`` + the inline span ``[[term:KEY]]texto[[/term]]`` in a Markdown
|
||||
# block. Mapping key -> (label, definition).
|
||||
_TERM_DEFS = {
|
||||
"groupby": (
|
||||
"Agrupación (split-apply-combine)",
|
||||
"Operación de agrupación (group by): parte la tabla en grupos según los "
|
||||
"valores de una columna categórica, aplica un cálculo (conteo, media, "
|
||||
"mediana…) dentro de cada grupo y combina los resultados en una tabla "
|
||||
"resumen. Es el patrón split-apply-combine."),
|
||||
"pivot_table": (
|
||||
"Tabla dinámica (pivot)",
|
||||
"Tabla dinámica que cruza dos variables categóricas — una en las filas y "
|
||||
"otra en las columnas — y rellena cada celda con un agregado (media, "
|
||||
"suma…) de una medida numérica. Resume de un vistazo cómo interactúan las "
|
||||
"dos categóricas sobre esa medida."),
|
||||
}
|
||||
|
||||
|
||||
def _term(mark: bool, key: str, text: str) -> str:
|
||||
"""Wrap ``text`` as a clickable glossary span when ``mark`` is True.
|
||||
|
||||
The visible text is identical with or without the marker (the renderers strip
|
||||
it), so wrapping never changes line layout — it only adds the link.
|
||||
"""
|
||||
return f"[[term:{key}]]{text}[[/term]]" if mark else text
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Formatting helpers (mirror the other chapters' defensive style).
|
||||
@@ -525,15 +554,18 @@ def _sections_live(profile: dict, ctx: dict, candidates: dict) -> list:
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Entry point.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _intro_blocks() -> list:
|
||||
def _intro_blocks(gloss=None, mark_term: bool = False) -> list:
|
||||
if gloss is not None:
|
||||
for key, (label, definition) in _TERM_DEFS.items():
|
||||
gloss.add(key, label, definition)
|
||||
t_groupby = _term(mark_term, "groupby", "**por grupos** (split-apply-combine)")
|
||||
t_pivot = _term(mark_term, "pivot_table", "**tablas dinámicas** (pivot)")
|
||||
text = (
|
||||
"Este capítulo analiza la tabla **por grupos** (split-apply-combine): "
|
||||
"elige las columnas categóricas más informativas — por su cardinalidad "
|
||||
"y relevancia, no todas contra todas, para no inflar comparaciones "
|
||||
"espurias — y resume las variables numéricas dentro de cada grupo "
|
||||
"(conteo, media, mediana, desviación). Las **tablas dinámicas** (pivot) "
|
||||
"cruzan dos categóricas sobre una medida, y los **gráficos de barras** "
|
||||
"(siempre desde cero) comparan los grupos de un vistazo."
|
||||
f"Este capítulo analiza la tabla {t_groupby}: elige las columnas "
|
||||
"categóricas más informativas (por cardinalidad y relevancia, no todas "
|
||||
"contra todas) y resume las variables numéricas dentro de cada grupo "
|
||||
f"(conteo, media, mediana, desviación). Se añaden {t_pivot} y "
|
||||
"**gráficos de barras** (siempre desde cero) para comparar los grupos."
|
||||
)
|
||||
return [model.Heading(text=CHAPTER_TITLE, level=1),
|
||||
model.Markdown(text=text)]
|
||||
@@ -556,13 +588,21 @@ def build_agregacion(profile: dict, ctx: dict):
|
||||
if not isinstance(profile, dict):
|
||||
return None
|
||||
|
||||
# Shared glossary collector: groupby + pivot_table live in the always-present
|
||||
# intro, so they are registered + marked there. Degrades silently (mark_term
|
||||
# False) when no collector is in ctx (standalone render).
|
||||
glossary = ctx.get("glossary")
|
||||
gloss = glossary if isinstance(glossary, model.GlossaryCollector) else None
|
||||
mark_term = gloss is not None
|
||||
|
||||
# Pre-computed results take precedence (offline / tests / forward-compat).
|
||||
pre = ctx.get("aggregations")
|
||||
if _is_dict(pre) and (pre.get("groupby") or pre.get("pivots")):
|
||||
sections = _sections_from_precomputed(pre)
|
||||
if not sections:
|
||||
return None
|
||||
blocks = _intro_blocks() + sections + _insights_section(ctx)
|
||||
blocks = (_intro_blocks(gloss, mark_term) + sections
|
||||
+ _insights_section(ctx))
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
@@ -583,10 +623,11 @@ def build_agregacion(profile: dict, ctx: dict):
|
||||
"crudos. Pasa ctx['db_path'] + ctx['table'] (para el cálculo "
|
||||
"push-down en DuckDB) o ctx['aggregations'] ya precalculado. "
|
||||
f"Columnas categóricas candidatas: {keys or '—'}.")
|
||||
blocks = _intro_blocks() + [note] + _insights_section(ctx)
|
||||
blocks = (_intro_blocks(gloss, mark_term) + [note]
|
||||
+ _insights_section(ctx))
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
blocks = _intro_blocks() + sections + _insights_section(ctx)
|
||||
blocks = _intro_blocks(gloss, mark_term) + sections + _insights_section(ctx)
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
@@ -254,3 +254,25 @@ def test_anti_corte_muchos_grupos_y_texto_largo():
|
||||
# First, middle and last words of the long paragraph all present.
|
||||
for i in (0, 60, 119):
|
||||
assert f"palabra{i}" in txt
|
||||
|
||||
|
||||
def test_glosario_engancha_groupby_y_pivot():
|
||||
"""Mejora 4b: la agrupación (split-apply-combine) y la tabla dinámica (pivot)
|
||||
se registran en el colector compartido y se marcan clicables en el cuerpo.
|
||||
Sin colector en ctx, el capítulo degrada y no marca nada."""
|
||||
from datascience.automatic_eda.model import GlossaryCollector
|
||||
|
||||
g = GlossaryCollector()
|
||||
ctx = dict(_ctx_precomputed())
|
||||
ctx["glossary"] = g
|
||||
ch = build_agregacion(_profile(), ctx)
|
||||
assert ch is not None
|
||||
keys = {t["key"] for t in g.terms()}
|
||||
assert {"groupby", "pivot_table"} <= keys
|
||||
body = " ".join(b.text for b in ch.blocks if b.kind == "markdown")
|
||||
assert "[[term:groupby]]" in body and "[[term:pivot_table]]" in body
|
||||
|
||||
# Sin colector: degrada limpio (ningún marcador en el cuerpo).
|
||||
ch2 = build_agregacion(_profile(), _ctx_precomputed())
|
||||
body2 = " ".join(b.text for b in ch2.blocks if b.kind == "markdown")
|
||||
assert "[[term:" not in body2
|
||||
|
||||
@@ -42,7 +42,11 @@ from __future__ import annotations
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
# 1.1.0: drop the duplicated section labels — the dictionary and PII DataTables
|
||||
# no longer carry a ``title`` (the section Heading labels them once, per the
|
||||
# OVERVIEW pattern in the contract). The data-dictionary column already reads
|
||||
# "Significado de negocio".
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_ID = "analisis_llm"
|
||||
CHAPTER_TITLE = "Análisis LLM"
|
||||
|
||||
@@ -118,6 +122,11 @@ def _dictionary_block(llm: dict):
|
||||
Columns: Columna / Descripción / Significado de negocio / Unidad. The
|
||||
paginator splits this by rows repeating the header and wraps long cells, so a
|
||||
long dictionary (many columns) never gets cut.
|
||||
|
||||
The block carries **no** ``title``: the section is labelled once by the
|
||||
``Heading`` that ``build_analisis_llm`` appends right before it (the canonical
|
||||
OVERVIEW pattern, contract §8). Giving the table its own ``title`` too would
|
||||
print "Diccionario de datos" twice in a row.
|
||||
"""
|
||||
entries = llm.get("dictionary")
|
||||
if not isinstance(entries, (list, tuple)) or not entries:
|
||||
@@ -137,7 +146,7 @@ def _dictionary_block(llm: dict):
|
||||
])
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(header=header, rows=rows, title="Diccionario de datos")
|
||||
return model.DataTable(header=header, rows=rows)
|
||||
|
||||
|
||||
def _analyses_blocks(llm: dict) -> list:
|
||||
@@ -159,7 +168,12 @@ def _cleaning_blocks(llm: dict) -> list:
|
||||
|
||||
|
||||
def _pii_block(llm: dict):
|
||||
"""DataTable for PII/GDPR findings, or None if absent/empty."""
|
||||
"""DataTable for PII/GDPR findings, or None if absent/empty.
|
||||
|
||||
Like the dictionary block, it carries **no** ``title`` (the ``Heading`` in
|
||||
``build_analisis_llm`` labels the section once); it keeps its ``note`` with
|
||||
the orientative-detection caveat, which the renderers print under the table.
|
||||
"""
|
||||
entries = llm.get("pii")
|
||||
if not isinstance(entries, (list, tuple)) or not entries:
|
||||
return None
|
||||
@@ -176,7 +190,7 @@ def _pii_block(llm: dict):
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(
|
||||
header=header, rows=rows, title="Datos personales (PII / RGPD)",
|
||||
header=header, rows=rows,
|
||||
note="detección automática orientativa — revisar antes de tratar los datos")
|
||||
|
||||
|
||||
|
||||
@@ -24,7 +24,7 @@ from pptx import Presentation
|
||||
from datascience.automatic_eda.chapters.analisis_llm import (
|
||||
build_analisis_llm, CHAPTER_VERSION)
|
||||
from datascience.automatic_eda.chapters_registry import build_document
|
||||
from datascience.automatic_eda.model import Chapter, DataTable
|
||||
from datascience.automatic_eda.model import Chapter, DataTable, Heading
|
||||
from datascience.render_automatic_eda_pdf import render_automatic_eda_pdf
|
||||
from datascience.render_automatic_eda_pptx import render_automatic_eda_pptx
|
||||
|
||||
@@ -117,6 +117,45 @@ def test_golden_build_y_render_pdf_pptx():
|
||||
assert "DESCTOKEN" in ptx
|
||||
|
||||
|
||||
def test_sin_rotulos_duplicados_y_significado_de_negocio():
|
||||
"""The dictionary / PII sections must be labelled ONCE.
|
||||
|
||||
Regression for the duplicated 'Diccionario de datos' and 'Datos personales
|
||||
(PII / RGPD)' headings (each section used to print its label twice: a Heading
|
||||
plus the DataTable's own title). The fix drops the DataTable title and keeps
|
||||
a single Heading — the OVERVIEW pattern. The data-dictionary column header is
|
||||
also pinned to the exact text 'Significado de negocio'.
|
||||
"""
|
||||
ch = build_analisis_llm(_profile(), {})
|
||||
assert ch is not None
|
||||
|
||||
# Structure: section labels come from Headings; tables carry no title.
|
||||
headings = [b.text for b in ch.blocks if isinstance(b, Heading)]
|
||||
assert headings.count("Diccionario de datos") == 1
|
||||
assert headings.count("Datos personales (PII / RGPD)") == 1
|
||||
for b in ch.blocks:
|
||||
if isinstance(b, DataTable):
|
||||
assert not b.title, f"DataTable should not duplicate the label: {b.title!r}"
|
||||
|
||||
# The data dictionary's third column reads exactly 'Significado de negocio'.
|
||||
dicts = [b for b in ch.blocks if isinstance(b, DataTable) and "Descripción" in b.header]
|
||||
assert dicts, "expected the data-dictionary DataTable"
|
||||
assert dicts[0].header == ["Columna", "Descripción", "Significado de negocio", "Unidad"]
|
||||
|
||||
# The PII table keeps its orientative-detection note.
|
||||
pii = [b for b in ch.blocks if isinstance(b, DataTable) and b.header == ["Columna", "Tipo", "Severidad"]]
|
||||
assert pii and pii[0].note and "orientativa" in pii[0].note
|
||||
|
||||
# Render: each label appears exactly once across the whole document (the only
|
||||
# 'Diccionario de datos' / 'Datos personales' producer is this chapter).
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out_pdf = os.path.join(d, "eda.pdf")
|
||||
render_automatic_eda_pdf(_profile(), out_pdf, {"title": "EDA — ventas"})
|
||||
txt = _pdf_text(out_pdf)
|
||||
assert txt.count("Diccionario de datos") == 1
|
||||
assert txt.count("Datos personales") == 1
|
||||
|
||||
|
||||
def test_orden_capitulo_junto_a_overview():
|
||||
chapters = build_document(_profile(), {})
|
||||
ids = [c.id for c in chapters]
|
||||
|
||||
@@ -1,22 +1,27 @@
|
||||
"""Data-quality chapter (CALIDAD) for AutomaticEDA.
|
||||
|
||||
Builds the quality chapter from a ``TableProfile`` of the ``eda`` group. The
|
||||
chapter answers, in Spanish and as tables, the three things the user asked for:
|
||||
chapter implements the quality model of report 2046:
|
||||
|
||||
1. **En qué se basa la calidad** — an intro paragraph explaining the criteria and
|
||||
their weights (completeness, validity, consistency) before any number, plus a
|
||||
table-level summary (global score and aggregates).
|
||||
1. **En qué se basa la calidad** — a concise intro naming the two scored
|
||||
dimensions and their weights (completitud 60%, validez 40%) plus the
|
||||
table-level row uniqueness, BEFORE any number, and stating that outliers are
|
||||
reported as observations and do **not** lower the score. The criteria terms
|
||||
(calidad de datos, completitud, validez, unicidad de registro) are hooked
|
||||
into the shared glossary as clickable jumps; their full definitions live in
|
||||
the GLOSARIO chapter, not inline here.
|
||||
2. **Scores por columna** — a table with, per column, the total quality score and
|
||||
its breakdown into completeness / validity / consistency.
|
||||
3. **Problemas en español** — a second table listing, per column, the readable
|
||||
issues in Spanish (kept separate from the type ``flags``).
|
||||
its breakdown into completeness / validity (no consistency dimension).
|
||||
3. **Problemas de calidad** — a table listing ONLY real quality defects
|
||||
(nulls, empty cells, values not conforming to their type/semantics).
|
||||
4. **Observaciones analíticas** — a SEPARATE table for outliers, constant
|
||||
columns, high-cardinality ids and strong skew, with an explicit note that
|
||||
these do not affect the score.
|
||||
|
||||
The breakdown and the issues are NOT recomputed here: they come from the registry
|
||||
function ``column_quality_score`` (group ``eda``), which already derives
|
||||
``{score, completeness, validity, consistency, issues}`` from the ColumnProfile.
|
||||
This chapter is render-only — it consumes that function and lays the result out
|
||||
as model blocks; the renderers paginate tables (splitting by rows, repeating the
|
||||
header) and wrap long cells so nothing is ever cut.
|
||||
The breakdown, issues and observations are NOT recomputed here: they come from
|
||||
the registry function ``column_quality_score`` (group ``eda``), which derives
|
||||
``{score, completeness, validity, dimensions, applicable, issues,
|
||||
observations}`` from the ColumnProfile. This chapter is render-only.
|
||||
|
||||
Contract: build_<id>(profile, ctx) -> Chapter | None ; CHAPTER_VERSION = "x.y.z".
|
||||
"""
|
||||
@@ -33,28 +38,47 @@ try: # pragma: no cover - import wiring
|
||||
except Exception: # noqa: BLE001 - never let an import error abort the document.
|
||||
_column_quality_score = None
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
CHAPTER_VERSION = "2.0.0"
|
||||
CHAPTER_ID = "calidad"
|
||||
CHAPTER_TITLE = "Calidad"
|
||||
|
||||
# Weights mirror column_quality_score: completeness 0.5, validity 0.3,
|
||||
# consistency 0.2. Kept here only to render the human explanation; the actual
|
||||
# numbers always come from the function so the two never drift in computation.
|
||||
_CRITERIA_INTRO = (
|
||||
"La calidad de cada columna es un score de 0 a 100 que combina tres "
|
||||
"criterios, cada uno con un peso:\n\n"
|
||||
"- **Completitud (peso 50%)**: proporción de valores presentes (sin nulos "
|
||||
"ni vacíos). Una columna con muchos nulos baja de score.\n"
|
||||
"- **Validez (peso 30%)**: los valores son coherentes con su tipo y rango "
|
||||
"esperado (penaliza outliers y semánticas declaradas que no coinciden).\n"
|
||||
"- **Consistencia (peso 20%)**: la columna aporta información útil (penaliza "
|
||||
"columnas constantes o identificadores de cardinalidad muy alta).\n\n"
|
||||
"Score = 100 × (0,5·completitud + 0,3·validez + 0,2·consistencia). "
|
||||
"Los problemas detectados por columna se listan en español más abajo."
|
||||
)
|
||||
# Glossary terms this chapter explains (report 2046 §6). Registered in the shared
|
||||
# collector and marked clickable on their first appearance (contract §11.1).
|
||||
_TERMS = {
|
||||
"calidad_datos": (
|
||||
"Calidad de datos (score 0-100)",
|
||||
"Mide hasta qué punto los datos están presentes y son utilizables tal "
|
||||
"cual, no si son «buenos para el análisis». Se compone solo de "
|
||||
"dimensiones medibles automáticamente desde el perfil de la tabla, sin "
|
||||
"fuente externa de verdad: completitud (60%), validez (40%, cuando es "
|
||||
"medible) y, a nivel de tabla, unicidad de registro. Los valores "
|
||||
"atípicos NO bajan la calidad: se listan aparte como observaciones.",
|
||||
),
|
||||
"completitud": (
|
||||
"Completitud",
|
||||
"Proporción de valores realmente presentes en una columna (1 − % de "
|
||||
"nulos; en texto, las celdas vacías también cuentan como faltantes). Los "
|
||||
"nulos y vacíos bajan el score porque falta información que debería "
|
||||
"estar. Pesa el 60% del score de columna.",
|
||||
),
|
||||
"validez": (
|
||||
"Validez",
|
||||
"Proporción de valores que encajan con su tipo o formato esperado: un "
|
||||
"número que parsea, una fecha legible, un email con forma de email. Los "
|
||||
"valores que no parsean a su tipo bajan el score. Si la columna es texto "
|
||||
"libre sin formato esperado, la validez no se puede medir y el score se "
|
||||
"basa solo en la completitud. Pesa el 40% del score cuando es medible.",
|
||||
),
|
||||
"unicidad_registro": (
|
||||
"Unicidad de registro",
|
||||
"A nivel de tabla, las filas duplicadas restan calidad al conjunto "
|
||||
"(1 − % de filas duplicadas). Es distinta de que una columna no-clave "
|
||||
"repita valores, que no es un defecto de calidad.",
|
||||
),
|
||||
}
|
||||
|
||||
# Cap for the joined issues cell so a single row never grows taller than a page;
|
||||
# the remainder is summarized as "(+N más)" instead of being silently dropped.
|
||||
# Cap for the joined cell so a single row never grows taller than a page; the
|
||||
# remainder is summarized as "(+N más)" instead of being silently dropped.
|
||||
_ISSUES_MAXLEN = 160
|
||||
|
||||
|
||||
@@ -82,12 +106,19 @@ def _fmt_unit_pct(value) -> str:
|
||||
return str(value)
|
||||
|
||||
|
||||
def _fmt_validity(value) -> str:
|
||||
"""Validity is ``None`` when not applicable: show ``n/a`` not a fake 0%."""
|
||||
if value is None:
|
||||
return "n/a"
|
||||
return _fmt_unit_pct(value)
|
||||
|
||||
|
||||
def _quality_of(col: dict) -> dict:
|
||||
"""Return ``{score, completeness, validity, consistency, issues}`` for a column.
|
||||
"""Return the quality dict for a column.
|
||||
|
||||
Uses the registry ``column_quality_score`` when available; otherwise falls
|
||||
back to the per-column ``quality_score`` already in the profile (number only,
|
||||
empty breakdown/issues). Never raises.
|
||||
empty breakdown/issues/observations). Never raises.
|
||||
"""
|
||||
if not isinstance(col, dict):
|
||||
col = {}
|
||||
@@ -98,26 +129,25 @@ def _quality_of(col: dict) -> dict:
|
||||
return res
|
||||
except Exception: # noqa: BLE001 - degrade instead of aborting.
|
||||
pass
|
||||
# Fallback: only the final score is available pre-computed in the profile.
|
||||
return {
|
||||
"score": col.get("quality_score"),
|
||||
"completeness": None,
|
||||
"validity": None,
|
||||
"consistency": None,
|
||||
"issues": [],
|
||||
"observations": [],
|
||||
}
|
||||
|
||||
|
||||
def _join_issues(issues) -> str:
|
||||
"""Join Spanish issue strings into one cell, truncating overly long lists.
|
||||
def _join_cells(items) -> str:
|
||||
"""Join Spanish strings into one cell, truncating overly long lists.
|
||||
|
||||
The renderer wraps cell text, but a column with many long issues could make a
|
||||
single row taller than a whole page; cap the length and append ``(+N más)``
|
||||
so the count of hidden issues is honest rather than silently lost.
|
||||
The renderer wraps cell text, but a column with many long entries could make
|
||||
a single row taller than a whole page; cap the length and append ``(+N más)``
|
||||
so the count of hidden entries is honest rather than silently lost.
|
||||
"""
|
||||
if not isinstance(issues, (list, tuple)) or not issues:
|
||||
if not isinstance(items, (list, tuple)) or not items:
|
||||
return ""
|
||||
parts = [model._safe_str(i).strip() for i in issues]
|
||||
parts = [model._safe_str(i).strip() for i in items]
|
||||
parts = [p for p in parts if p]
|
||||
if not parts:
|
||||
return ""
|
||||
@@ -142,6 +172,33 @@ def _columns_with_quality(profile: dict):
|
||||
yield c, _quality_of(c)
|
||||
|
||||
|
||||
def _fmt_unit_pct_or_pct(value) -> str:
|
||||
"""Format a value that may be a 0-1 fraction or an already-0-100 percentage."""
|
||||
try:
|
||||
num = float(value)
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
if num != num: # NaN
|
||||
return "—"
|
||||
pct = num * 100 if num <= 1.0 else num
|
||||
text = f"{pct:.1f}".rstrip("0").rstrip(".")
|
||||
return f"{text}%"
|
||||
|
||||
|
||||
def _row_uniqueness(profile: dict):
|
||||
"""Return row uniqueness (1 - duplicate_pct) in [0,1], or None if unknown."""
|
||||
dup = profile.get("duplicate_pct")
|
||||
if dup is None:
|
||||
return None
|
||||
try:
|
||||
d = float(dup)
|
||||
except (TypeError, ValueError):
|
||||
return None
|
||||
if d > 1.0: # tolerate a 0-100 scale
|
||||
d = d / 100.0
|
||||
return max(0.0, min(1.0, 1.0 - d))
|
||||
|
||||
|
||||
def _summary_block(profile: dict, evaluated: list):
|
||||
"""Table-level KVTable: global score and quality aggregates."""
|
||||
rows = []
|
||||
@@ -153,14 +210,15 @@ def _summary_block(profile: dict, evaluated: list):
|
||||
if isinstance(q.get("completeness"), (int, float))]
|
||||
vals = [q.get("validity") for _, q in evaluated
|
||||
if isinstance(q.get("validity"), (int, float))]
|
||||
cons = [q.get("consistency") for _, q in evaluated
|
||||
if isinstance(q.get("consistency"), (int, float))]
|
||||
if comps:
|
||||
rows.append(("Completitud media", _fmt_unit_pct(sum(comps) / len(comps))))
|
||||
if vals:
|
||||
rows.append(("Validez media", _fmt_unit_pct(sum(vals) / len(vals))))
|
||||
if cons:
|
||||
rows.append(("Consistencia media", _fmt_unit_pct(sum(cons) / len(cons))))
|
||||
rows.append(("Validez media (donde aplica)",
|
||||
_fmt_unit_pct(sum(vals) / len(vals))))
|
||||
|
||||
ru = _row_uniqueness(profile)
|
||||
if ru is not None:
|
||||
rows.append(("Unicidad de registro", _fmt_unit_pct(ru)))
|
||||
|
||||
n_problem = sum(1 for _, q in evaluated if q.get("issues"))
|
||||
rows.append(("Columnas con problemas", str(n_problem)))
|
||||
@@ -182,22 +240,9 @@ def _summary_block(profile: dict, evaluated: list):
|
||||
return model.KVTable(rows=rows, title="Resumen de calidad")
|
||||
|
||||
|
||||
def _fmt_unit_pct_or_pct(value) -> str:
|
||||
"""Format a value that may be a 0-1 fraction or an already-0-100 percentage."""
|
||||
try:
|
||||
num = float(value)
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
if num != num: # NaN
|
||||
return "—"
|
||||
pct = num * 100 if num <= 1.0 else num
|
||||
text = f"{pct:.1f}".rstrip("0").rstrip(".")
|
||||
return f"{text}%"
|
||||
|
||||
|
||||
def _scores_block(evaluated: list):
|
||||
"""DataTable with per-column score and its three-criteria breakdown."""
|
||||
header = ["Columna", "Calidad", "Completitud", "Validez", "Consistencia"]
|
||||
"""DataTable with per-column score and its completeness/validity breakdown."""
|
||||
header = ["Columna", "Calidad", "Completitud", "Validez"]
|
||||
rows = []
|
||||
# Worst columns first so the reader sees the problems at the top.
|
||||
ordered = sorted(
|
||||
@@ -210,22 +255,22 @@ def _scores_block(evaluated: list):
|
||||
col.get("name") or "(col)",
|
||||
_fmt_score(q.get("score")),
|
||||
_fmt_unit_pct(q.get("completeness")),
|
||||
_fmt_unit_pct(q.get("validity")),
|
||||
_fmt_unit_pct(q.get("consistency")),
|
||||
_fmt_validity(q.get("validity")),
|
||||
])
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(header=header, rows=rows,
|
||||
title="Scores de calidad por columna",
|
||||
note="0 = peor, 100 = mejor; ordenado de peor a mejor")
|
||||
note="0 = peor, 100 = mejor; «n/a» = dimensión no "
|
||||
"medible; ordenado de peor a mejor")
|
||||
|
||||
|
||||
def _issues_block(evaluated: list):
|
||||
"""DataTable listing Spanish issues per column, or a Note when there are none."""
|
||||
header = ["Columna", "Problemas detectados (español)"]
|
||||
"""DataTable listing ONLY real quality defects per column, or a Note."""
|
||||
header = ["Columna", "Problemas de calidad (español)"]
|
||||
rows = []
|
||||
for col, q in evaluated:
|
||||
joined = _join_issues(q.get("issues"))
|
||||
joined = _join_cells(q.get("issues"))
|
||||
if joined:
|
||||
rows.append([col.get("name") or "(col)", joined])
|
||||
if not rows:
|
||||
@@ -235,6 +280,55 @@ def _issues_block(evaluated: list):
|
||||
title="Problemas de calidad por columna")
|
||||
|
||||
|
||||
def _observations_block(evaluated: list):
|
||||
"""DataTable listing analytical observations per column, or None.
|
||||
|
||||
Observations (outliers, constant columns, ids, strong skew) are NOT quality
|
||||
defects: they do not affect the score. Returned as a separate table from the
|
||||
issues so the report never presents a legitimate outlier as a problem.
|
||||
"""
|
||||
header = ["Columna", "Observaciones analíticas"]
|
||||
rows = []
|
||||
for col, q in evaluated:
|
||||
joined = _join_cells(q.get("observations"))
|
||||
if joined:
|
||||
rows.append([col.get("name") or "(col)", joined])
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(
|
||||
header=header, rows=rows,
|
||||
title="Observaciones analíticas por columna",
|
||||
note="No son defectos de calidad y NO afectan al score; orientan el "
|
||||
"análisis (atípicos, columnas constantes, identificadores).")
|
||||
|
||||
|
||||
def _term(key: str, label: str, mark: bool) -> str:
|
||||
"""Render a term as a clickable glossary span when marking is enabled."""
|
||||
if mark:
|
||||
return f"[[term:{key}]]**{label}**[[/term]]"
|
||||
return f"**{label}**"
|
||||
|
||||
|
||||
def _criteria_intro(mark: bool) -> str:
|
||||
"""Intro: how the score is composed, with every term marked clickable.
|
||||
|
||||
Concise on purpose: the definitions of each term (calidad de datos,
|
||||
completitud, validez, unicidad de registro) now live in the GLOSARIO
|
||||
chapter, so the body no longer repeats them — it only states how the score
|
||||
is composed and keeps each term marked so it stays a clickable jump.
|
||||
"""
|
||||
calidad = _term("calidad_datos", "calidad de datos", mark)
|
||||
completitud = _term("completitud", "completitud", mark)
|
||||
validez = _term("validez", "validez", mark)
|
||||
unicidad = _term("unicidad_registro", "unicidad de registro", mark)
|
||||
return (
|
||||
f"La {calidad} de cada columna es un score de 0 a 100 que combina "
|
||||
f"{completitud} (peso 60%) y {validez} (peso 40%, cuando es medible); "
|
||||
f"a nivel de tabla se añade la {unicidad}. Los valores atípicos no "
|
||||
"bajan el score: se listan aparte como **observaciones analíticas**."
|
||||
)
|
||||
|
||||
|
||||
def build_calidad(profile: dict, ctx: dict):
|
||||
"""Build the data-quality Chapter, or None if the profile has no columns.
|
||||
|
||||
@@ -250,17 +344,35 @@ def build_calidad(profile: dict, ctx: dict):
|
||||
if not evaluated:
|
||||
return None # no columns to score -> chapter does not apply.
|
||||
|
||||
# Register the criteria terms in the shared glossary (if present) and mark
|
||||
# their first appearance clickable. Contract §11.1.
|
||||
glossary = ctx.get("glossary")
|
||||
mark = False
|
||||
if isinstance(glossary, model.GlossaryCollector):
|
||||
for key, (label, definition) in _TERMS.items():
|
||||
glossary.add(key, label, definition)
|
||||
mark = True
|
||||
|
||||
blocks = [
|
||||
model.Heading(text="Cómo se calcula la calidad", level=2),
|
||||
model.Markdown(text=_CRITERIA_INTRO),
|
||||
model.Markdown(text=_criteria_intro(mark)),
|
||||
_summary_block(profile, evaluated),
|
||||
model.Heading(text="Scores por columna", level=2),
|
||||
]
|
||||
scores = _scores_block(evaluated)
|
||||
if scores is not None:
|
||||
blocks.append(scores)
|
||||
blocks.append(model.Heading(text="Problemas detectados", level=2))
|
||||
|
||||
blocks.append(model.Heading(text="Problemas de calidad", level=2))
|
||||
blocks.append(_issues_block(evaluated))
|
||||
|
||||
observations = _observations_block(evaluated)
|
||||
if observations is not None:
|
||||
blocks.append(model.Heading(text="Observaciones analíticas", level=2))
|
||||
blocks.append(model.Note(
|
||||
"Las observaciones siguientes NO son defectos de calidad y no "
|
||||
"afectan al score: son señales para orientar el análisis."))
|
||||
blocks.append(observations)
|
||||
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
@@ -1,11 +1,12 @@
|
||||
"""Tests for the CALIDAD chapter — DoD: golden + edges + anti-cut.
|
||||
"""Tests for the CALIDAD chapter — DoD: golden + edges + anti-cut + glossary.
|
||||
|
||||
Self-contained: builds synthetic TableProfiles (no DuckDB) so the suite is fast
|
||||
and deterministic. Verifies that the chapter explains the quality criteria, shows
|
||||
per-column scores with the completeness/validity/consistency breakdown, lists the
|
||||
issues in Spanish (separate from the type flags), returns None when it does not
|
||||
apply, and that a wide profile with long names renders to PDF and PPTX without
|
||||
cutting any cell text (long content wraps, it is never truncated).
|
||||
and deterministic. Verifies the report-2046 quality model: the chapter explains
|
||||
the two scored dimensions (completitud 60% / validez 40%), shows per-column
|
||||
scores without a consistency column, keeps quality DEFECTS (issues) separate
|
||||
from analytical OBSERVATIONS (outliers, constant, ids), hooks the criteria terms
|
||||
into the glossary, returns None when it does not apply, and renders a wide
|
||||
profile to PDF and PPTX without cutting any cell text.
|
||||
"""
|
||||
|
||||
import os
|
||||
@@ -20,28 +21,30 @@ from datascience.automatic_eda.chapters.calidad import (
|
||||
CHAPTER_VERSION,
|
||||
)
|
||||
from datascience.automatic_eda import build_document, render_pdf, render_pptx
|
||||
from datascience.automatic_eda import model
|
||||
|
||||
|
||||
def _profile() -> dict:
|
||||
"""A small profile with one column per quality problem (nulls, outliers,
|
||||
constant, high-cardinality id) plus one clean column."""
|
||||
constant, high-cardinality id) plus one clean column. ``outlier_pct`` is in
|
||||
the 0-100 scale that describe_numeric actually emits."""
|
||||
return {
|
||||
"table": "demo",
|
||||
"quality_score": 72.5,
|
||||
"quality_score": 82.0,
|
||||
"duplicate_pct": 0.04,
|
||||
"null_cell_pct": 0.11,
|
||||
"constant_cols": ["flag_const"],
|
||||
"all_null_cols": [],
|
||||
"columns": [
|
||||
{"name": "edad", "inferred_type": "integer", "null_pct": 0.2,
|
||||
"numeric": {"outlier_pct": 0.15, "min": 0, "max": 99},
|
||||
"quality_score": 60},
|
||||
{"name": "edad", "inferred_type": "numeric", "null_pct": 0.2,
|
||||
"n_rows": 100, "unique_pct": 0.5,
|
||||
"numeric": {"outlier_pct": 15.0, "min": 0, "max": 99}},
|
||||
{"name": "nombre", "inferred_type": "text", "null_pct": 0.0,
|
||||
"unique_pct": 0.98, "quality_score": 80},
|
||||
"unique_pct": 0.98, "flags": ["possible_id"]},
|
||||
{"name": "flag_const", "inferred_type": "text", "null_pct": 0.0,
|
||||
"flags": ["constant"], "quality_score": 50},
|
||||
{"name": "limpia", "inferred_type": "float", "null_pct": 0.0,
|
||||
"numeric": {"outlier_pct": 0.0}, "quality_score": 100},
|
||||
"unique_pct": 0.01, "flags": ["constant"]},
|
||||
{"name": "limpia", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"unique_pct": 0.5, "numeric": {"outlier_pct": 0.0}},
|
||||
],
|
||||
}
|
||||
|
||||
@@ -50,16 +53,9 @@ def _tables(chapter):
|
||||
return [b for b in chapter.blocks if getattr(b, "kind", None) == "data_table"]
|
||||
|
||||
|
||||
def _scores_table(chapter):
|
||||
def _table_by_title(chapter, needle):
|
||||
for t in _tables(chapter):
|
||||
if "Scores" in (t.title or ""):
|
||||
return t
|
||||
return None
|
||||
|
||||
|
||||
def _issues_table(chapter):
|
||||
for t in _tables(chapter):
|
||||
if "Problemas" in (t.title or ""):
|
||||
if needle in (t.title or ""):
|
||||
return t
|
||||
return None
|
||||
|
||||
@@ -73,41 +69,86 @@ def test_golden_chapter_estructura_y_version():
|
||||
assert ch.id == "calidad"
|
||||
assert ch.version == CHAPTER_VERSION
|
||||
kinds = [b.kind for b in ch.blocks]
|
||||
# intro heading + markdown criteria + summary kv + scores table + issues table
|
||||
assert "markdown" in kinds and "kv_table" in kinds and "data_table" in kinds
|
||||
|
||||
|
||||
def test_golden_intro_explica_criterios_y_pesos():
|
||||
def test_golden_intro_nombra_dos_dimensiones_y_pesos():
|
||||
# La intro nombra las dos dimensiones, sus pesos y la unicidad, pero ya NO
|
||||
# repite sus definiciones largas: estas viven ahora en el capítulo GLOSARIO.
|
||||
ch = build_calidad(_profile(), {})
|
||||
intro = [b for b in ch.blocks if b.kind == "markdown"][0].text
|
||||
for needle in ("Completitud", "Validez", "Consistencia",
|
||||
"50%", "30%", "20%"):
|
||||
for needle in ("completitud", "validez", "60%", "40%",
|
||||
"unicidad de registro"):
|
||||
assert needle in intro, f"falta {needle!r} en la intro de criterios"
|
||||
# El principio: los outliers NO bajan la calidad.
|
||||
assert "atípicos" in intro and "no bajan" in intro
|
||||
# Ya no se menciona la dimensión consistencia eliminada.
|
||||
assert "20%" not in intro
|
||||
|
||||
|
||||
def test_golden_scores_incluyen_desglose_por_criterio():
|
||||
def test_golden_scores_sin_columna_consistencia():
|
||||
ch = build_calidad(_profile(), {})
|
||||
scores = _scores_table(ch)
|
||||
scores = _table_by_title(ch, "Scores")
|
||||
assert scores is not None
|
||||
assert scores.header == ["Columna", "Calidad", "Completitud",
|
||||
"Validez", "Consistencia"]
|
||||
# 4 columns scored, none dropped.
|
||||
assert scores.header == ["Columna", "Calidad", "Completitud", "Validez"]
|
||||
assert "Consistencia" not in scores.header
|
||||
assert len(scores.rows) == 4
|
||||
names = {r[0] for r in scores.rows}
|
||||
assert names == {"edad", "nombre", "flag_const", "limpia"}
|
||||
|
||||
|
||||
def test_golden_issues_en_espanol_separados_de_flags():
|
||||
def test_golden_outliers_en_observaciones_no_en_problemas():
|
||||
ch = build_calidad(_profile(), {})
|
||||
issues = _issues_table(ch)
|
||||
assert issues is not None
|
||||
flat = " | ".join(" ".join(r) for r in issues.rows)
|
||||
assert "nulos" in flat # completeness issue (ES)
|
||||
assert "outliers" in flat # validity issue (ES)
|
||||
assert "columna constante" in flat
|
||||
assert "posible id de alta cardinalidad" in flat
|
||||
# The raw type flag string must NOT leak as a "problem".
|
||||
assert "constant" not in flat or "columna constante" in flat
|
||||
problemas = _table_by_title(ch, "Problemas de calidad")
|
||||
observaciones = _table_by_title(ch, "Observaciones")
|
||||
assert problemas is not None
|
||||
assert observaciones is not None
|
||||
|
||||
problemas_txt = " | ".join(" ".join(r) for r in problemas.rows)
|
||||
observaciones_txt = " | ".join(" ".join(r) for r in observaciones.rows)
|
||||
|
||||
# Los nulos SÍ son problema de calidad.
|
||||
assert "nulos" in problemas_txt
|
||||
# Los outliers NO aparecen como problema...
|
||||
assert "atípic" not in problemas_txt and "outlier" not in problemas_txt
|
||||
# ...sino como observación analítica.
|
||||
assert "atípic" in observaciones_txt
|
||||
# Constante e id: observaciones, no problemas.
|
||||
assert "constante" in observaciones_txt
|
||||
assert "identificador" in observaciones_txt
|
||||
assert "constante" not in problemas_txt
|
||||
|
||||
|
||||
def test_golden_score_columna_limpia_es_100():
|
||||
"""Columna sin nulos, numérica nativa: score 100 aunque tenga (o no) outliers."""
|
||||
ch = build_calidad(_profile(), {})
|
||||
scores = _table_by_title(ch, "Scores")
|
||||
by_name = {r[0]: r for r in scores.rows}
|
||||
assert by_name["limpia"][1] == "100 / 100"
|
||||
# edad: 20% nulos -> 100*(0.6*0.8 + 0.4*1.0) = 88; los outliers no bajan nada.
|
||||
assert by_name["edad"][1] == "88 / 100"
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Glosario (contrato §11.1)
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_glosario_registra_los_cuatro_terminos_y_marca_clicable():
|
||||
glossary = model.GlossaryCollector()
|
||||
ch = build_calidad(_profile(), {"glossary": glossary})
|
||||
for key in ("calidad_datos", "completitud", "validez", "unicidad_registro"):
|
||||
assert glossary.has(key), f"término {key!r} no registrado en el glosario"
|
||||
intro = [b for b in ch.blocks if b.kind == "markdown"][0].text
|
||||
# Con colector presente, la primera aparición se marca clicable.
|
||||
assert "[[term:completitud]]" in intro
|
||||
assert "[[term:validez]]" in intro
|
||||
assert "[[term:calidad_datos]]" in intro
|
||||
assert "[[term:unicidad_registro]]" in intro
|
||||
|
||||
|
||||
def test_sin_glosario_no_marca_terminos():
|
||||
ch = build_calidad(_profile(), {}) # ctx sin glossary
|
||||
intro = [b for b in ch.blocks if b.kind == "markdown"][0].text
|
||||
assert "[[term:" not in intro
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
@@ -124,17 +165,17 @@ def test_edge_perfil_limpio_sin_problemas_usa_nota():
|
||||
prof = {
|
||||
"quality_score": 100,
|
||||
"columns": [
|
||||
{"name": "a", "inferred_type": "float", "null_pct": 0.0,
|
||||
"numeric": {"outlier_pct": 0.0}},
|
||||
{"name": "b", "inferred_type": "float", "null_pct": 0.0,
|
||||
"numeric": {"outlier_pct": 0.0}},
|
||||
{"name": "a", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"unique_pct": 0.5, "numeric": {"outlier_pct": 0.0}},
|
||||
{"name": "b", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"unique_pct": 0.5, "numeric": {"outlier_pct": 0.0}},
|
||||
],
|
||||
}
|
||||
ch = build_calidad(prof, {})
|
||||
assert ch is not None
|
||||
assert _issues_table(ch) is None # no issues table
|
||||
assert _table_by_title(ch, "Problemas de calidad") is None # no issues table
|
||||
notes = [b for b in ch.blocks if b.kind == "note"]
|
||||
assert notes and "No se detectaron problemas" in notes[0].text
|
||||
assert any("No se detectaron problemas" in n.text for n in notes)
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
@@ -143,44 +184,42 @@ def test_edge_perfil_limpio_sin_problemas_usa_nota():
|
||||
def _wide_profile(ncols: int = 22) -> dict:
|
||||
cols = [
|
||||
{"name": "identificador_unico_de_transaccion_con_nombre_muy_largo",
|
||||
"inferred_type": "text", "null_pct": 0.0, "unique_pct": 0.99},
|
||||
"inferred_type": "text", "null_pct": 0.0, "unique_pct": 0.99,
|
||||
"flags": ["possible_id"]},
|
||||
{"name": "columna_constante_sin_ninguna_variacion_de_valor",
|
||||
"inferred_type": "text", "null_pct": 0.0, "flags": ["constant"]},
|
||||
"inferred_type": "text", "null_pct": 0.0, "unique_pct": 0.01,
|
||||
"flags": ["constant"]},
|
||||
]
|
||||
for k in range(ncols - 2):
|
||||
cols.append({
|
||||
"name": f"metrica_numerica_de_negocio_{k:02d}_con_nombre_largo",
|
||||
"inferred_type": "float", "null_pct": 0.1 + (k % 3) * 0.05,
|
||||
"numeric": {"outlier_pct": 0.08, "min": 0, "max": 1000},
|
||||
"inferred_type": "numeric", "null_pct": 0.1 + (k % 3) * 0.05,
|
||||
"unique_pct": 0.5,
|
||||
"numeric": {"outlier_pct": 8.0, "min": 0, "max": 1000},
|
||||
})
|
||||
return {"table": "ancha", "quality_score": 70.0, "columns": cols}
|
||||
return {"table": "ancha", "quality_score": 70.0, "duplicate_pct": 0.0,
|
||||
"columns": cols}
|
||||
|
||||
|
||||
def test_anticut_pdf_y_pptx_no_truncan_nombres_largos():
|
||||
prof = _wide_profile(22)
|
||||
full = build_document(prof, {"dataset_name": "ancha"})
|
||||
assert any(c.id == "calidad" for c in full)
|
||||
# Render ONLY the calidad chapter so the anti-cut assertions are scoped to
|
||||
# this chapter (other chapters, e.g. portada, legitimately contain '…').
|
||||
chapters = [c for c in full if c.id == "calidad"]
|
||||
long_name = "metrica_numerica_de_negocio_00_con_nombre_largo"
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
pdf = os.path.join(d, "q.pdf")
|
||||
pptx = os.path.join(d, "q.pptx")
|
||||
rp = render_pdf(chapters, pdf, {"title": "EDA"})
|
||||
rx = render_pptx(chapters, pptx, {"title": "EDA"})
|
||||
render_pptx(chapters, pptx, {"title": "EDA"})
|
||||
assert os.path.exists(pdf) and os.path.exists(pptx)
|
||||
# The wide table forces pagination across several pages/slides.
|
||||
assert (rp or {}).get("n_pages", 0) >= 2
|
||||
|
||||
# PDF: the long name survives whole once wraps (spaces/newlines) removed,
|
||||
# and there is no truncation marker.
|
||||
pdf_txt = "".join((pg.extract_text() or "") for pg in PdfReader(pdf).pages)
|
||||
assert "…" not in pdf_txt and "..." not in pdf_txt
|
||||
norm = re.sub(r"\s+", "", pdf_txt)
|
||||
assert long_name in norm, "el nombre largo se cortó en el PDF"
|
||||
|
||||
# PPTX: long name present in some cell, untruncated.
|
||||
allt = []
|
||||
for s in Presentation(pptx).slides:
|
||||
for sh in s.shapes:
|
||||
|
||||
@@ -1,19 +1,25 @@
|
||||
"""Categorical distributions chapter (CAT DISTR).
|
||||
|
||||
Third reference chapter for AutomaticEDA. For every categorical column it shows,
|
||||
fulfilling the user's request:
|
||||
Third reference chapter for AutomaticEDA. Each categorical column gets **its own
|
||||
page (PDF) / slide (PPTX)**: every column is wrapped in a keep-together
|
||||
``model.Group`` with ``page_break_before=True`` (except the first, which may share
|
||||
the intro's page), so its chart sits next to its tables and no column is split.
|
||||
|
||||
1. A short opening explanation of **Shannon entropy** (what it measures, its 0
|
||||
and log2(k) bounds, the normalized 0–1 version) and the dataset row total used
|
||||
as a comparison baseline.
|
||||
2. Per column, a cardinality key/value table: distinct values, ``% distinct``
|
||||
(distinct / total rows), total dataset rows, singleton values (frequency 1),
|
||||
entropy with its theoretical maximum and the normalized ratio, mode, imbalance
|
||||
and string-length stats.
|
||||
3. A short note flagging problematic cardinality (id-like ≈100% distinct, or a
|
||||
A short intro names the clickable **[[term:entropia]]entropía[[/term]]** term —
|
||||
the full definition lives in the GLOSARIO chapter, so it is NOT repeated inline
|
||||
here (one click jumps to the glossary entry). The intro also carries the dataset
|
||||
row total used as a comparison baseline.
|
||||
|
||||
Per column the Group contains, in order:
|
||||
|
||||
1. A cardinality key/value table: distinct values, ``% distinct`` (distinct /
|
||||
total rows), total dataset rows, singleton values (frequency 1), entropy with
|
||||
its theoretical maximum and the normalized ratio, mode, imbalance and
|
||||
string-length stats.
|
||||
2. A short note flagging problematic cardinality (id-like ≈100% distinct, or a
|
||||
single dominating category).
|
||||
4. A ``top-k`` table (value / count / %).
|
||||
5. A **donut pie chart** of the most common categories (top-k + an "Otros"
|
||||
3. A ``top-k`` table (value / count / %).
|
||||
4. A **donut pie chart** of the most common categories (top-k + an "Otros"
|
||||
bucket), drawn lazily so the renderers scale it to fit entirely.
|
||||
|
||||
Data comes from the ``eda`` group: each ``columns[i]['categorical']`` is the
|
||||
@@ -33,7 +39,7 @@ import math
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_VERSION = "1.2.0"
|
||||
CHAPTER_ID = "cat_distr"
|
||||
CHAPTER_TITLE = "Distribuciones categóricas"
|
||||
|
||||
@@ -53,11 +59,17 @@ _TERM_ENTROPIA_DEF = (
|
||||
# Cap the number of categorical columns rendered to keep the document bounded;
|
||||
# the rest are summarized in a closing note (no silent truncation).
|
||||
MAX_COLS = 40
|
||||
# Rows shown in each top-k table and explicit slices in the pie.
|
||||
TOP_TABLE_ROWS = 15
|
||||
# Rows shown in each top-k table and explicit slices in the pie. Kept moderate so
|
||||
# the whole column — cardinality table + top-k table + donut — fits on ONE
|
||||
# page/slide with the chart next to its tables; the table note still reports
|
||||
# "top N of M" so nothing is silently hidden. For id-like columns (≈100%
|
||||
# distinct) the top-k table is dropped entirely (it would be a list of unique
|
||||
# values — pure noise), which also frees the room the donut needs (see build).
|
||||
TOP_TABLE_ROWS = 8
|
||||
PIE_TOP_K = 6
|
||||
# Truncate very long category labels in tables (the renderer also wraps).
|
||||
LABEL_MAX = 48
|
||||
# Truncate very long category labels in tables (the renderer also wraps). Kept
|
||||
# tight so a column with long id-like values (names, tickets) still fits its page.
|
||||
LABEL_MAX = 28
|
||||
|
||||
|
||||
def _fmt_int(value) -> str:
|
||||
@@ -267,45 +279,55 @@ def _normalize_card(card: dict) -> dict:
|
||||
|
||||
|
||||
def _cardinality_block(card: dict):
|
||||
"""KVTable with the cardinality / entropy metrics for one column."""
|
||||
"""KVTable with the cardinality / entropy metrics for one column.
|
||||
|
||||
Related metrics are grouped onto a single row each (distinct/%/unique;
|
||||
entropy bits/max/normalized; length min/mean/max) so the whole column —
|
||||
table + chart — fits one page/slide without dropping any datum; the short
|
||||
16:9 PPTX slide does not fit one metric per row plus a chart otherwise."""
|
||||
n_singletons = card.get("n_singletons")
|
||||
if n_singletons is not None and card.get("n_singletons_partial"):
|
||||
singletons = f"≥{_fmt_int(n_singletons)} (en top mostrado)"
|
||||
singletons = f"≥{_fmt_int(n_singletons)}"
|
||||
elif n_singletons is not None:
|
||||
singletons = _fmt_int(n_singletons)
|
||||
else:
|
||||
singletons = "—"
|
||||
|
||||
entropy_ref = _fmt_num(card.get("entropy"))
|
||||
emax = card.get("entropy_max")
|
||||
if emax is not None:
|
||||
entropy_ref = f"{entropy_ref} (máx {_fmt_num(emax)})"
|
||||
# Distinct count · % distinct · unique (frequency 1) on one row.
|
||||
distinct_combo = (f"{_fmt_int(card.get('n_distinct'))} · "
|
||||
f"{_fmt_pct_value(card.get('pct_distinct'))} · "
|
||||
f"{singletons} únicos")
|
||||
|
||||
# Entropy bits · theoretical max · normalized 0–1 on one row.
|
||||
entropy_combo = (f"{_fmt_num(card.get('entropy'))} bits · "
|
||||
f"máx {_fmt_num(card.get('entropy_max'))} · "
|
||||
f"norm {_fmt_num(card.get('entropy_norm'))}")
|
||||
|
||||
mode = card.get("mode")
|
||||
mode_pct = card.get("mode_pct")
|
||||
mode_str = "—" if mode is None else model._safe_str(mode)
|
||||
mode_str = "—" if mode is None else _truncate(mode, 32)
|
||||
if mode is not None and mode_pct is not None:
|
||||
mode_str = f"{mode_str} ({_fmt_pct_value(mode_pct)})"
|
||||
|
||||
rows = [
|
||||
("Valores distintos", _fmt_int(card.get("n_distinct"))),
|
||||
("% distintos", _fmt_pct_value(card.get("pct_distinct"))),
|
||||
("Distintos · % · únicos", distinct_combo),
|
||||
("Total filas (dataset)", _fmt_int(card.get("n_rows"))),
|
||||
("Valores únicos (frecuencia 1)", singletons),
|
||||
("Entropía (bits)", entropy_ref),
|
||||
("Entropía normalizada (0–1)", _fmt_num(card.get("entropy_norm"))),
|
||||
("Entropía (bits · máx · norm)", entropy_combo),
|
||||
("Moda", mode_str),
|
||||
]
|
||||
imbalance = card.get("imbalance")
|
||||
if imbalance is not None:
|
||||
rows.append(("Desbalance", _fmt_num(imbalance)))
|
||||
lm = card.get("len_min")
|
||||
lmean = card.get("len_mean")
|
||||
lmax = card.get("len_max")
|
||||
# Imbalance and string length (both secondary) share one closing row.
|
||||
extras = []
|
||||
if imbalance is not None:
|
||||
extras.append(f"desbalance {_fmt_num(imbalance)}")
|
||||
if any(v is not None for v in (lm, lmean, lmax)):
|
||||
rows.append((
|
||||
"Longitud (mín/media/máx)",
|
||||
f"{_fmt_num(lm)} / {_fmt_num(lmean)} / {_fmt_num(lmax)}"))
|
||||
extras.append(
|
||||
f"long. {_fmt_num(lm)}/{_fmt_num(lmean)}/{_fmt_num(lmax)}")
|
||||
if extras:
|
||||
rows.append(("Desbalance · longitud", " · ".join(extras)))
|
||||
return model.KVTable(rows=rows, title="Cardinalidad")
|
||||
|
||||
|
||||
@@ -315,7 +337,8 @@ def _flag_note(card: dict):
|
||||
return model.Note(
|
||||
"Casi todos los valores son distintos (≈100% distintos): la columna "
|
||||
"se comporta como un identificador y aporta poco para agrupar o "
|
||||
"comparar categorías.")
|
||||
"comparar categorías. No se lista el top de categorías (serían "
|
||||
"valores casi todos únicos).")
|
||||
if card.get("dominated"):
|
||||
mp = card.get("mode_pct")
|
||||
mp_str = _fmt_pct_value(mp) if mp is not None else "muy alta"
|
||||
@@ -335,7 +358,7 @@ def _topk_table(cat: dict):
|
||||
if not isinstance(t, dict):
|
||||
continue
|
||||
rows.append([
|
||||
model._safe_str(t.get("value")),
|
||||
_truncate(t.get("value")),
|
||||
_fmt_int(t.get("count")),
|
||||
_pct_from_maybe_fraction(t.get("pct")),
|
||||
])
|
||||
@@ -353,20 +376,16 @@ def _topk_table(cat: dict):
|
||||
def _intro_blocks(n_rows, mark_term: bool = False):
|
||||
total = _fmt_int(n_rows)
|
||||
# Mark the first appearance of the term as a clickable glossary jump when the
|
||||
# term was registered (mark_term). The visible text is identical either way.
|
||||
entropia = ("[[term:entropia]]**entropía de Shannon**[[/term]]" if mark_term
|
||||
else "**entropía de Shannon**")
|
||||
# term was registered (mark_term). The full definition of entropy lives in the
|
||||
# GLOSARIO chapter, so the intro only names the clickable term here instead of
|
||||
# repeating the long explanation (avoids the redundancy with the glossary).
|
||||
entropia = ("[[term:entropia]]entropía[[/term]]" if mark_term
|
||||
else "entropía")
|
||||
text = (
|
||||
f"La {entropia} mide cómo de repartidos están los valores de "
|
||||
"una columna categórica, en bits. Vale 0 cuando una sola categoría "
|
||||
"concentra todas las filas (máxima previsibilidad) y alcanza su máximo, "
|
||||
"log2(k) para k categorías distintas, cuando todas aparecen por igual "
|
||||
"(máxima diversidad). La **entropía normalizada** (entropía dividida por "
|
||||
"su máximo) la lleva al rango 0–1 para comparar columnas con distinto "
|
||||
"número de categorías. Para cada columna se muestran los valores "
|
||||
"distintos, el porcentaje que representan sobre el total de filas, los "
|
||||
"valores únicos (que aparecen una sola vez), la tabla de las categorías "
|
||||
"más frecuentes y un gráfico de tarta (donut) de las más comunes."
|
||||
f"Cada columna categórica ocupa su propia página: sus métricas de "
|
||||
f"cardinalidad —incluida la {entropia}—, una nota que señala cardinalidad "
|
||||
"problemática, la tabla de las categorías más frecuentes y un gráfico de "
|
||||
"tarta (donut) de las más comunes, todo junto."
|
||||
)
|
||||
if n_rows is not None:
|
||||
text += f" El dataset tiene {total} filas en total como referencia."
|
||||
@@ -398,24 +417,37 @@ def build_cat_distr(profile: dict, ctx: dict):
|
||||
blocks = list(_intro_blocks(n_rows, mark_term=mark_term))
|
||||
|
||||
rendered = cat_cols[:MAX_COLS]
|
||||
for col in rendered:
|
||||
for idx, col in enumerate(rendered):
|
||||
name = col.get("name") or "(columna)"
|
||||
cat = col.get("categorical") or {}
|
||||
card = _normalize_card(_cardinality(cat, n_rows))
|
||||
|
||||
blocks.append(model.Heading(text=str(name), level=2))
|
||||
blocks.append(_cardinality_block(card))
|
||||
# One Group per categorical column: heading + cardinality table + flag
|
||||
# note + top-k table + donut figure are kept together and the renderer
|
||||
# starts each on a fresh page/slide (page_break_before) so every column
|
||||
# gets its own page with its chart next to its tables. The first column
|
||||
# may share the intro's page (no forced break) to avoid a near-empty page.
|
||||
col_blocks = [
|
||||
model.Heading(text=str(name), level=2),
|
||||
_cardinality_block(card),
|
||||
]
|
||||
note = _flag_note(card)
|
||||
if note is not None:
|
||||
blocks.append(note)
|
||||
topk = _topk_table(cat)
|
||||
if topk is not None:
|
||||
blocks.append(topk)
|
||||
blocks.append(model.Figure(
|
||||
col_blocks.append(note)
|
||||
# For id-like columns (≈100% distinct) the top-k is a list of unique
|
||||
# values — pure noise; skip it (the flag note already explains why) and
|
||||
# let the donut take that room so the whole column fits one page/slide.
|
||||
if not card.get("id_like"):
|
||||
topk = _topk_table(cat)
|
||||
if topk is not None:
|
||||
col_blocks.append(topk)
|
||||
col_blocks.append(model.Figure(
|
||||
make=_pie_make(cat.get("top") or [], card.get("n_distinct"),
|
||||
str(name), n_rows),
|
||||
caption=(f"Categorías más comunes de «{_truncate(name, 32)}» "
|
||||
"(donut: top-k + «Otros»)")))
|
||||
blocks.append(model.Group(blocks=col_blocks,
|
||||
page_break_before=(idx > 0)))
|
||||
|
||||
if len(cat_cols) > len(rendered):
|
||||
omitted = len(cat_cols) - len(rendered)
|
||||
|
||||
@@ -2,11 +2,14 @@
|
||||
|
||||
Self-contained: builds synthetic TableProfiles (no DuckDB) so the suite is fast
|
||||
and deterministic. Verifies that ``build_cat_distr`` emits the blocks the user
|
||||
asked for (entropy intro, distinct/total/%-distinct/unique metrics, top-k table
|
||||
and a donut figure), that the chapter renders inside the full document to both
|
||||
PDF and PPTX showing that content, that a profile with no categorical columns
|
||||
yields ``None`` without raising, and that long labels / many columns are never
|
||||
cut in either output.
|
||||
asked for (distinct/total/%-distinct/unique metrics, top-k table and a donut
|
||||
figure), that EACH categorical column is wrapped in its own keep-together
|
||||
``Group`` that starts on a fresh page/slide (one column per page, chart next to
|
||||
its tables), that the long entropy explanation is NOT repeated inline (it lives
|
||||
in the glossary — only the clickable term is kept), that the chapter renders
|
||||
inside the full document to both PDF and PPTX showing that content, that a
|
||||
profile with no categorical columns yields ``None`` without raising, and that
|
||||
long labels / many columns are never cut in either output.
|
||||
"""
|
||||
|
||||
import os
|
||||
@@ -17,7 +20,8 @@ from pypdf import PdfReader
|
||||
from pptx import Presentation
|
||||
|
||||
from datascience.automatic_eda.model import (
|
||||
DataTable, Figure, Heading, KVTable, Note,
|
||||
DataTable, Figure, GlossaryCollector, Group, Heading, KVTable, Markdown,
|
||||
Note,
|
||||
)
|
||||
from datascience.automatic_eda.chapters.cat_distr import (
|
||||
CHAPTER_ID, CHAPTER_VERSION, build_cat_distr,
|
||||
@@ -81,8 +85,20 @@ def _pptx_text(path: str) -> str:
|
||||
return re.sub(r"\s+", " ", " ".join(parts))
|
||||
|
||||
|
||||
def _kinds(chapter):
|
||||
return [b.kind for b in chapter.blocks]
|
||||
def _flatten(blocks):
|
||||
"""Expand keep-together Groups so the per-column heading/table/figure are
|
||||
inspectable as a flat block list (the chapter wraps each column in a Group)."""
|
||||
out = []
|
||||
for b in blocks:
|
||||
if getattr(b, "kind", "") == "group":
|
||||
out.extend(_flatten(getattr(b, "blocks", []) or []))
|
||||
else:
|
||||
out.append(b)
|
||||
return out
|
||||
|
||||
|
||||
def _column_groups(chapter):
|
||||
return [b for b in chapter.blocks if isinstance(b, Group)]
|
||||
|
||||
|
||||
def test_golden_build_cat_distr_emite_bloques_pedidos():
|
||||
@@ -90,36 +106,101 @@ def test_golden_build_cat_distr_emite_bloques_pedidos():
|
||||
assert ch is not None
|
||||
assert ch.id == CHAPTER_ID
|
||||
assert ch.version == CHAPTER_VERSION
|
||||
kinds = _kinds(ch)
|
||||
# Entropy intro present.
|
||||
|
||||
# Entropy intro present, but the long explanation is gone (it lives in the
|
||||
# glossary now): only the term is named, no log2/normalizada walkthrough.
|
||||
headings = [b.text for b in ch.blocks if isinstance(b, Heading)]
|
||||
assert any("Entrop" in h for h in headings)
|
||||
md = next(b for b in ch.blocks if b.kind == "markdown")
|
||||
assert "entropía" in md.text.lower() and "log2" in md.text
|
||||
# Cardinality metrics: distinct, total rows, %-distinct, unique values.
|
||||
kv = next(b for b in ch.blocks if isinstance(b, KVTable))
|
||||
md = next(b for b in ch.blocks if isinstance(b, Markdown))
|
||||
assert "entropía" in md.text.lower()
|
||||
assert "log2" not in md.text # redundant explanation removed.
|
||||
assert "máxima diversidad" not in md.text
|
||||
|
||||
# Per-column blocks are wrapped in keep-together Groups: flatten to inspect.
|
||||
flat = _flatten(ch.blocks)
|
||||
kv = next(b for b in flat if isinstance(b, KVTable))
|
||||
labels = [r[0] for r in kv.rows]
|
||||
assert "Valores distintos" in labels
|
||||
assert "% distintos" in labels
|
||||
values = " ".join(str(r[1]) for r in kv.rows)
|
||||
# Cardinality metrics: distinct count, %-distinct, unique values and total
|
||||
# rows are present (grouped onto compact rows so the chart fits the page).
|
||||
assert "Distintos · % · únicos" in labels
|
||||
assert "Total filas (dataset)" in labels
|
||||
assert "Valores únicos (frecuencia 1)" in labels
|
||||
assert any("Entropía" in lbl for lbl in labels)
|
||||
assert "únicos" in values and "%" in values
|
||||
assert "bits" in values and "norm" in values # entropy + max + normalized.
|
||||
# Top-k table + pie figure.
|
||||
dt = next(b for b in ch.blocks if isinstance(b, DataTable))
|
||||
dt = next(b for b in flat if isinstance(b, DataTable))
|
||||
assert dt.header == ["Valor", "Conteo", "%"]
|
||||
assert any("neumaticos" in str(cell) for row in dt.rows for cell in row)
|
||||
assert any(isinstance(b, Figure) for b in ch.blocks)
|
||||
# id-like column flagged with a Note.
|
||||
assert any(isinstance(b, Note) and "identificador" in b.text
|
||||
for b in ch.blocks)
|
||||
assert any(isinstance(b, Figure) for b in flat)
|
||||
# id-like column flagged with a Note that also explains the top-k is dropped.
|
||||
idnote = next((b for b in flat
|
||||
if isinstance(b, Note) and "identificador" in b.text), None)
|
||||
assert idnote is not None
|
||||
assert "No se lista el top" in idnote.text
|
||||
|
||||
|
||||
def test_golden_render_pdf_muestra_categoricas():
|
||||
def test_golden_idlike_omite_topk_y_conserva_donut():
|
||||
# The id-like column (uuid, 100% distinct) must NOT carry a top-k DataTable
|
||||
# (it would be a list of unique values), but must still keep its donut Figure
|
||||
# and its cardinality table so it stays a full per-column page.
|
||||
ch = build_cat_distr(_profile(), {})
|
||||
groups = _column_groups(ch)
|
||||
uuid_group = next(g for g in groups
|
||||
if any(getattr(b, "text", "") == "uuid" for b in g.blocks))
|
||||
kinds = [b.kind for b in uuid_group.blocks]
|
||||
assert "data_table" not in kinds # top-k of unique values dropped.
|
||||
assert "kv_table" in kinds # cardinality kept.
|
||||
assert "figure" in kinds # donut kept (chart per column).
|
||||
# A non-id-like column keeps its top-k table.
|
||||
cat_group = next(g for g in groups
|
||||
if any(getattr(b, "text", "") == "categoria"
|
||||
for b in g.blocks))
|
||||
assert "data_table" in [b.kind for b in cat_group.blocks]
|
||||
|
||||
|
||||
def test_golden_una_pagina_por_columna_groups():
|
||||
ch = build_cat_distr(_profile(), {})
|
||||
groups = _column_groups(ch)
|
||||
# Two categorical columns -> two column Groups (numeric column excluded).
|
||||
assert len(groups) == 2
|
||||
# Each Group carries one column: a heading + its cardinality table + figure.
|
||||
for g in groups:
|
||||
kinds = [b.kind for b in g.blocks]
|
||||
assert kinds[0] == "heading"
|
||||
assert "kv_table" in kinds
|
||||
assert "figure" in kinds
|
||||
# The first column may share the intro page (no forced break); every later
|
||||
# column starts on a fresh page/slide so each column gets its own page.
|
||||
assert groups[0].page_break_before is False
|
||||
assert all(g.page_break_before is True for g in groups[1:])
|
||||
|
||||
|
||||
def test_golden_entropia_clicable_y_definicion_en_glosario():
|
||||
# With a glossary collector the intro marks the clickable term and the FULL
|
||||
# definition (the long explanation removed from the intro) lands in the
|
||||
# glossary, not inline — no data lost, just relocated.
|
||||
gc = GlossaryCollector()
|
||||
ch = build_cat_distr(_profile(), {"glossary": gc})
|
||||
md = next(b for b in ch.blocks if isinstance(b, Markdown))
|
||||
assert "[[term:entropia]]entropía[[/term]]" in md.text
|
||||
assert gc.has("entropia")
|
||||
entry = gc.get("entropia")
|
||||
assert entry is not None
|
||||
# The definition kept in the glossary still carries the detail removed inline.
|
||||
assert "log2" in entry["definition"]
|
||||
assert "normalizada" in entry["definition"].lower()
|
||||
|
||||
|
||||
def test_golden_render_pdf_una_pagina_por_columna():
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pdf")
|
||||
res = render_automatic_eda_pdf(_profile(), out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
cat_meta = next(c for c in res["chapters"] if c["id"] == CHAPTER_ID)
|
||||
# Two categorical columns, each on its own page -> >= 2 pages for the
|
||||
# chapter (intro shares the first column's page).
|
||||
assert cat_meta["n_pages"] >= 2
|
||||
txt = _pdf_text(out)
|
||||
assert "Entrop" in txt
|
||||
assert "distintos" in txt
|
||||
@@ -133,13 +214,91 @@ def test_golden_render_pptx_muestra_categoricas():
|
||||
out = os.path.join(d, "eda.pptx")
|
||||
res = render_automatic_eda_pptx(_profile(), out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
cat_meta = next(c for c in res["chapters"] if c["id"] == CHAPTER_ID)
|
||||
assert cat_meta["n_slides"] >= 2 # one slide per categorical column.
|
||||
txt = _pptx_text(out)
|
||||
assert "Entrop" in txt
|
||||
assert "categoria" in txt and "neumaticos" in txt
|
||||
assert "distintos" in txt
|
||||
|
||||
|
||||
def _profile_high_card() -> dict:
|
||||
"""Profile with a high-cardinality NON-id-like categorical column whose top-k
|
||||
of long values would split from its donut on a short 16:9 slide unless the
|
||||
renderer trims the table — the exact case the adversarial check flagged
|
||||
(Ticket / Cabin)."""
|
||||
long_vals = [f"Valor largo de categoria numero {i:02d} con texto extra"
|
||||
for i in range(40)]
|
||||
top = [{"value": v, "count": 60 - i, "pct": (60 - i) / 5000.0}
|
||||
for i, v in enumerate(long_vals)]
|
||||
return {
|
||||
"table": "t", "source": "t.csv", "n_rows": 5000, "n_cols": 3,
|
||||
"quality_score": 80.0,
|
||||
"columns": [
|
||||
{"name": "precio", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"numeric": {"mean": 1.0, "median": 1.0, "min": 0.0, "max": 2.0,
|
||||
"std": 0.5}},
|
||||
# 40 distinct over 5000 rows = 0.8% distinct -> NOT id-like, keeps
|
||||
# its (long) top-k table; the tall table must not push the donut off.
|
||||
{"name": "alta_card_col", "inferred_type": "categorical",
|
||||
"null_pct": 0.0, "distinct_count": 40,
|
||||
"categorical": {"top": top, "mode": long_vals[0], "n_distinct": 40,
|
||||
"entropy": 5.2, "imbalance": 1.2, "len_min": 40,
|
||||
"len_mean": 45, "len_max": 50}},
|
||||
{"name": "baja_card_col", "inferred_type": "categorical",
|
||||
"null_pct": 0.0, "distinct_count": 4,
|
||||
"categorical": {
|
||||
"top": [{"value": "norte", "count": 2000, "pct": 0.4},
|
||||
{"value": "sur", "count": 1500, "pct": 0.3},
|
||||
{"value": "este", "count": 1000, "pct": 0.2},
|
||||
{"value": "oeste", "count": 500, "pct": 0.1}],
|
||||
"mode": "norte", "n_distinct": 4, "entropy": 1.8}},
|
||||
],
|
||||
}
|
||||
|
||||
|
||||
def test_golden_pptx_una_slide_por_columna_con_su_grafico():
|
||||
"""Each categorical column occupies EXACTLY ONE cat_distr slide that carries
|
||||
BOTH its cardinality table and its donut figure (picture) — i.e. the chart is
|
||||
never separated from its table, even for a high-cardinality column."""
|
||||
from pptx.enum.shapes import MSO_SHAPE_TYPE
|
||||
|
||||
prof = _profile_high_card()
|
||||
cat_names = ["alta_card_col", "baja_card_col"]
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pptx")
|
||||
res = render_automatic_eda_pptx(prof, out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
prs = Presentation(out)
|
||||
|
||||
# Per column: the cat_distr slides whose text mentions it, and whether the
|
||||
# owning slide also has the donut caption + an actual picture shape.
|
||||
slides_with_col = {n: [] for n in cat_names}
|
||||
owner_has_chart = {n: False for n in cat_names}
|
||||
for i, sl in enumerate(prs.slides):
|
||||
texts, has_pic = [], False
|
||||
for sh in sl.shapes:
|
||||
if sh.has_text_frame:
|
||||
texts.append(sh.text_frame.text)
|
||||
if sh.shape_type == MSO_SHAPE_TYPE.PICTURE:
|
||||
has_pic = True
|
||||
txt = re.sub(r"\s+", " ", " ".join(texts))
|
||||
if "Distribuciones categ" not in txt: # footer stamp of the chapter.
|
||||
continue
|
||||
for n in cat_names:
|
||||
if n in txt:
|
||||
slides_with_col[n].append(i)
|
||||
has_table = "Cardinalidad" in txt or "distintos" in txt
|
||||
if has_pic and "donut" in txt and has_table:
|
||||
owner_has_chart[n] = True
|
||||
|
||||
for n in cat_names:
|
||||
# Exactly one slide carries the column (not split across slides).
|
||||
assert len(slides_with_col[n]) == 1, (n, slides_with_col[n])
|
||||
# That single slide also holds its table AND its donut picture.
|
||||
assert owner_has_chart[n], (n, "tabla y donut no están en el mismo slide")
|
||||
|
||||
|
||||
def test_edge_sin_categoricas_devuelve_none():
|
||||
only_numeric = {
|
||||
"n_rows": 10, "columns": [
|
||||
@@ -170,11 +329,15 @@ def test_anti_corte_label_largo_y_muchas_columnas():
|
||||
|
||||
ch = build_cat_distr(profile, {})
|
||||
assert ch is not None
|
||||
# One Group per column, each forcing its own page (except the first).
|
||||
groups = _column_groups(ch)
|
||||
assert len(groups) == 30
|
||||
assert sum(1 for g in groups if g.page_break_before) == 29
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
pdf = os.path.join(d, "anti.pdf")
|
||||
res = render_automatic_eda_pdf(profile, pdf, {"write_manifest": False})
|
||||
assert res["path"] == pdf
|
||||
assert res["n_pages"] > 1 # many columns spilled across pages, OK.
|
||||
assert res["n_pages"] > 1 # one page per column, OK.
|
||||
txt = _pdf_text(pdf)
|
||||
# Long label wrapped (not truncated): every word survives.
|
||||
for word in ("Lorem", "incididunt", "reprehenderit", "voluptate"):
|
||||
|
||||
@@ -31,7 +31,7 @@ import math
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_ID = "correlacion"
|
||||
CHAPTER_TITLE = "Correlación"
|
||||
|
||||
@@ -47,6 +47,60 @@ _MAX_MATRIX_LABELS = 16
|
||||
# How many pairs to show in each of the top-positive / top-negative tables.
|
||||
_TOP_N = 10
|
||||
|
||||
# How many of the strongest numeric-numeric pairs to draw as scatter plots on
|
||||
# each sign (positive / negative). A scatter per pair carries a fitted line/curve
|
||||
# and a relationship-type label; keeping the count small keeps the chapter
|
||||
# readable on a phone / a slide. Only signed (Pearson/Spearman) pairs qualify —
|
||||
# Cramér's V / correlation ratio pairs are not numeric-numeric, so no scatter.
|
||||
_SCATTER_TOP_N = 3
|
||||
|
||||
# Glossary terms this chapter explains. Each is registered in the shared
|
||||
# collector (ctx['glossary']) and marked clickable on its first appearance in the
|
||||
# body — the canonical two-step pattern (see ``cat_distr`` for the reference
|
||||
# implementation): ``glossary.add(key, label, definition)`` + the inline span
|
||||
# ``[[term:KEY]]texto visible[[/term]]`` in a Markdown block. Mapping key ->
|
||||
# (label, definition). ``fdr`` is only registered when the FDR summary is present.
|
||||
_TERM_DEFS = {
|
||||
"pearson": (
|
||||
"Pearson (coeficiente r)",
|
||||
"Coeficiente de correlación lineal de Pearson (r) entre dos variables "
|
||||
"numéricas. Va de −1 (relación lineal inversa perfecta) a +1 (directa "
|
||||
"perfecta); 0 indica ausencia de relación lineal. Sólo capta relaciones "
|
||||
"lineales, por eso lleva signo."),
|
||||
"spearman": (
|
||||
"Spearman (correlación de rangos)",
|
||||
"Correlación de rangos de Spearman: el coeficiente de Pearson calculado "
|
||||
"sobre los puestos (rangos) de los valores en vez de sus magnitudes. Mide "
|
||||
"relaciones monótonas (no necesariamente lineales), va de −1 a +1 y es "
|
||||
"robusta frente a valores atípicos."),
|
||||
"cramers_v": (
|
||||
"Cramér's V",
|
||||
"Medida de asociación entre dos variables categóricas, derivada del "
|
||||
"estadístico chi-cuadrado y normalizada al rango 0–1 (0 = independientes, "
|
||||
"1 = asociación total). No tiene signo: sólo mide la intensidad."),
|
||||
"correlation_ratio": (
|
||||
"Razón de correlación (η)",
|
||||
"Razón de correlación (eta) entre una variable numérica y una "
|
||||
"categórica: la fracción de la varianza de la numérica explicada por los "
|
||||
"grupos de la categórica. Va de 0 (los grupos no explican nada) a 1 (la "
|
||||
"explican toda); no tiene signo."),
|
||||
"fdr": (
|
||||
"Comparaciones múltiples (FDR)",
|
||||
"Al evaluar muchos pares a la vez, algunos parecen significativos por "
|
||||
"puro azar. La corrección por tasa de falsos descubrimientos (FDR, "
|
||||
"Benjamini-Hochberg) ajusta los p-valores para controlar la proporción "
|
||||
"esperada de falsos positivos entre los pares declarados significativos."),
|
||||
}
|
||||
|
||||
|
||||
def _term(mark: bool, key: str, text: str) -> str:
|
||||
"""Wrap ``text`` as a clickable glossary span when ``mark`` is True.
|
||||
|
||||
The visible text is identical with or without the marker (the renderers strip
|
||||
the marker), so wrapping never changes line layout — it only adds the link.
|
||||
"""
|
||||
return f"[[term:{key}]]{text}[[/term]]" if mark else text
|
||||
|
||||
|
||||
def _is_num(v) -> bool:
|
||||
"""True for a real, finite int/float (not bool, not NaN/inf)."""
|
||||
@@ -245,7 +299,7 @@ def _methods_block(corr: dict):
|
||||
return model.KVTable(rows=rows, title="Métodos de asociación")
|
||||
|
||||
|
||||
def _fdr_text(corr: dict) -> str | None:
|
||||
def _fdr_text(corr: dict, mark_term: bool = False) -> str | None:
|
||||
"""One-line summary of the multiple-testing (FDR) correction, or None."""
|
||||
mt = corr.get("multiple_testing")
|
||||
if not isinstance(mt, dict) or not mt:
|
||||
@@ -254,7 +308,8 @@ def _fdr_text(corr: dict) -> str | None:
|
||||
alpha = mt.get("alpha")
|
||||
n_tests = mt.get("n_tests")
|
||||
n_rej = mt.get("n_rejected")
|
||||
parts = [f"Corrección por comparaciones múltiples ({method}"]
|
||||
multi = _term(mark_term, "fdr", "comparaciones múltiples")
|
||||
parts = [f"Corrección por {multi} ({method}"]
|
||||
if _is_num(alpha):
|
||||
parts[0] += f", α={float(alpha):g}"
|
||||
parts[0] += ")."
|
||||
@@ -266,6 +321,139 @@ def _fdr_text(corr: dict) -> str | None:
|
||||
return " ".join(parts)
|
||||
|
||||
|
||||
def _is_seq(values) -> bool:
|
||||
"""True for a non-empty list/tuple of values (a raw numeric column)."""
|
||||
return isinstance(values, (list, tuple)) and len(values) > 0
|
||||
|
||||
|
||||
def _select_scatter_pairs(pairs: list, top_n: int = _SCATTER_TOP_N):
|
||||
"""Pick the strongest numeric-numeric pairs to draw as scatters.
|
||||
|
||||
Only signed (Pearson/Spearman) pairs are numeric-numeric and thus eligible
|
||||
for a scatter with a fitted curve. Returns up to ``top_n`` of the strongest
|
||||
positive pairs followed by up to ``top_n`` of the strongest negative ones,
|
||||
each ranked by magnitude. Mixed-type metrics (Cramér's V, correlation ratio,
|
||||
mutual information) are excluded — they have no x/y scatter interpretation.
|
||||
"""
|
||||
positive = []
|
||||
negative = []
|
||||
for pair in pairs:
|
||||
if not isinstance(pair, dict) or not _is_signed(pair):
|
||||
continue
|
||||
value = pair.get("value")
|
||||
if not _is_num(value):
|
||||
continue
|
||||
if value > 0:
|
||||
positive.append(pair)
|
||||
elif value < 0:
|
||||
negative.append(pair)
|
||||
positive.sort(key=lambda p: abs(float(p.get("value", 0.0))), reverse=True)
|
||||
negative.sort(key=lambda p: abs(float(p.get("value", 0.0))), reverse=True)
|
||||
return positive[:top_n] + negative[:top_n]
|
||||
|
||||
|
||||
def _classification_note(a: str, b: str, cls: dict) -> str:
|
||||
"""Human-readable sentence describing the relationship of a pair.
|
||||
|
||||
Plain text (not baked into the figure image) so the type label is selectable
|
||||
in the PDF / extractable by pdftotext, and sits right next to its scatter
|
||||
inside the keep-together Group.
|
||||
"""
|
||||
tipo = model._safe_str(cls.get("tipo")) or "sin forma clara"
|
||||
bits = []
|
||||
pearson = cls.get("pearson")
|
||||
spearman = cls.get("spearman")
|
||||
r2_lin = cls.get("r2_linear")
|
||||
r2_poly = None
|
||||
for key in ("r2_poly2", "r2_poly3"):
|
||||
v = cls.get(key)
|
||||
if _is_num(v) and (r2_poly is None or float(v) > r2_poly):
|
||||
r2_poly = float(v)
|
||||
if _is_num(pearson):
|
||||
bits.append(f"Pearson r={float(pearson):+.2f}")
|
||||
if _is_num(spearman):
|
||||
bits.append(f"Spearman ρ={float(spearman):+.2f}")
|
||||
if _is_num(r2_lin):
|
||||
bits.append(f"R² lineal={float(r2_lin):.2f}")
|
||||
if r2_poly is not None:
|
||||
bits.append(f"R² polinómico={r2_poly:.2f}")
|
||||
metrics = "; ".join(bits)
|
||||
text = (f"Relación **{tipo}** entre «{a}» y «{b}»."
|
||||
+ (f" {metrics}." if metrics else ""))
|
||||
return text
|
||||
|
||||
|
||||
def _scatter_blocks(pairs: list, raw_numeric):
|
||||
"""Build keep-together scatter Groups for the strongest num-num pairs.
|
||||
|
||||
Returns a list of blocks (a Heading plus one Group per pair), or an empty
|
||||
list when there is no raw numeric data (e.g. the lite profile drops
|
||||
``ctx['raw_numeric']`` to skip live recomputation) or the relationship
|
||||
helpers are unavailable. Never raises: any failure degrades to no scatters,
|
||||
leaving the matrix + tables intact.
|
||||
"""
|
||||
if not isinstance(raw_numeric, dict) or not raw_numeric:
|
||||
return []
|
||||
selected = _select_scatter_pairs(pairs)
|
||||
if not selected:
|
||||
return []
|
||||
|
||||
# The relationship helpers live in the datascience package. Import lazily so
|
||||
# the chapter still builds (matrix + tables) when they are absent.
|
||||
try:
|
||||
from datascience.classify_relationship_type import (
|
||||
classify_relationship_type,
|
||||
)
|
||||
from datascience.relationship_scatter_figure import (
|
||||
relationship_scatter_figure,
|
||||
)
|
||||
except Exception: # noqa: BLE001 — degrade, never break the chapter.
|
||||
return []
|
||||
|
||||
groups = []
|
||||
for pair in selected:
|
||||
a = pair.get("a")
|
||||
b = pair.get("b")
|
||||
xs = raw_numeric.get(a)
|
||||
ys = raw_numeric.get(b)
|
||||
# Edge: a selected pair has no raw column (aggregated profile, renamed
|
||||
# column, …) — skip just that pair, keep the rest.
|
||||
if not _is_seq(xs) or not _is_seq(ys):
|
||||
continue
|
||||
try:
|
||||
cls = classify_relationship_type(list(xs), list(ys)) or {}
|
||||
except Exception: # noqa: BLE001
|
||||
continue
|
||||
a_lbl = model._safe_str(a)
|
||||
b_lbl = model._safe_str(b)
|
||||
|
||||
def _make(xs=xs, ys=ys, a_lbl=a_lbl, b_lbl=b_lbl, cls=cls):
|
||||
return relationship_scatter_figure(
|
||||
list(xs), list(ys), x_label=a_lbl, y_label=b_lbl,
|
||||
classification=cls)
|
||||
|
||||
groups.append(model.Group(blocks=[
|
||||
model.Heading(text=f"{a_lbl} ↔ {b_lbl}", level=2),
|
||||
model.Figure(
|
||||
make=_make,
|
||||
caption=(f"Dispersión de «{a_lbl}» frente a «{b_lbl}» con la "
|
||||
"curva de ajuste del mejor modelo.")),
|
||||
model.Markdown(text=_classification_note(a_lbl, b_lbl, cls)),
|
||||
]))
|
||||
|
||||
if not groups:
|
||||
return []
|
||||
intro = model.Markdown(text=(
|
||||
"Para los pares numéricos más fuertes (positivos y negativos) se dibuja "
|
||||
"la nube de puntos con su ajuste y se clasifica el **tipo de relación**: "
|
||||
"**lineal** (una recta basta), **polinómica** (curva de grado 2/3 que "
|
||||
"mejora claramente el ajuste lineal), **monótona no-lineal** (crece o "
|
||||
"decrece siempre pero no en línea recta; Spearman ≫ Pearson) o "
|
||||
"**débil/sin forma**."))
|
||||
return [model.Heading(text="Relaciones más fuertes (scatter)", level=2),
|
||||
intro] + groups
|
||||
|
||||
|
||||
def build_correlacion(profile: dict, ctx: dict):
|
||||
"""Build the Correlation Chapter, or None if there are no pairs to show.
|
||||
|
||||
@@ -289,13 +477,30 @@ def build_correlacion(profile: dict, ctx: dict):
|
||||
|
||||
blocks: list = []
|
||||
|
||||
# Intro: what this chapter shows and how to read the sign.
|
||||
# Register the always-present method terms in the shared glossary and mark
|
||||
# their first appearance clickable (the FDR term is registered lazily below,
|
||||
# only when the FDR summary is actually emitted). Degrades silently when no
|
||||
# collector is in ctx (standalone render) — mark_term stays False.
|
||||
glossary = ctx.get("glossary")
|
||||
gloss = glossary if isinstance(glossary, model.GlossaryCollector) else None
|
||||
mark_term = gloss is not None
|
||||
if gloss is not None:
|
||||
for key in ("pearson", "spearman", "cramers_v", "correlation_ratio"):
|
||||
label, definition = _TERM_DEFS[key]
|
||||
gloss.add(key, label, definition)
|
||||
|
||||
# Intro: what this chapter shows and how to read the sign. Build the marked
|
||||
# method names as locals first (avoids backslash-in-f-string for "Cramér's V").
|
||||
t_pearson = _term(mark_term, "pearson", "Pearson")
|
||||
t_spearman = _term(mark_term, "spearman", "Spearman")
|
||||
t_cramers = _term(mark_term, "cramers_v", "Cramér's V")
|
||||
t_corr_ratio = _term(mark_term, "correlation_ratio", "razón de correlación")
|
||||
blocks.append(model.Markdown(text=(
|
||||
"Asociación entre columnas. Cada par se evalúa con la métrica adecuada a "
|
||||
"sus tipos (Pearson/Spearman entre numéricas — con **signo**; Cramér's V "
|
||||
"entre categóricas; razón de correlación num-categórica; información mutua "
|
||||
"como medida común no lineal). Sólo las correlaciones **num-num** tienen "
|
||||
"dirección: por eso los pares **negativos** son siempre num-num.")))
|
||||
"Asociación entre columnas. Cada par se evalúa con la métrica adecuada "
|
||||
f"a sus tipos: {t_pearson}/{t_spearman} (numéricas), {t_cramers} "
|
||||
f"(categóricas), {t_corr_ratio} (num-categórica) e información mutua. "
|
||||
"Sólo las correlaciones **num-num** llevan **signo** (dirección): por "
|
||||
"eso los pares **negativos** son siempre num-num.")))
|
||||
|
||||
# 1) Association matrix (heatmap).
|
||||
labels, trimmed = _ordered_labels(pairs)
|
||||
@@ -327,6 +532,18 @@ def build_correlacion(profile: dict, ctx: dict):
|
||||
"No se han hallado correlaciones negativas significativas entre "
|
||||
"columnas numéricas.")))
|
||||
|
||||
# 2.5) Scatter plots of the strongest numeric-numeric pairs, each with its
|
||||
# fitted curve and a relationship-type label (lineal / polinómica / monótona
|
||||
# / débil). Needs the raw numeric sample (ctx['raw_numeric'], row-aligned);
|
||||
# when it is absent (aggregated/lite profile) the scatters are simply omitted
|
||||
# and the matrix + tables above stand on their own.
|
||||
raw_numeric = None
|
||||
if isinstance(ctx, dict):
|
||||
raw_numeric = ctx.get("raw_numeric") or profile.get("raw_numeric")
|
||||
else:
|
||||
raw_numeric = profile.get("raw_numeric")
|
||||
blocks.extend(_scatter_blocks(pairs, raw_numeric))
|
||||
|
||||
# 3) Spuriousness caveat for level-based correlations (Granger–Newbold).
|
||||
caveat = corr.get("levels_caveat")
|
||||
if isinstance(caveat, str) and caveat.strip():
|
||||
@@ -337,9 +554,13 @@ def build_correlacion(profile: dict, ctx: dict):
|
||||
"no estacionarias y pueden ser espurias (Granger–Newbold). Compáralas "
|
||||
"sobre los retornos/diferencias antes de interpretarlas.")))
|
||||
|
||||
# 4) FDR summary + methods legend.
|
||||
fdr_text = _fdr_text(corr)
|
||||
# 4) FDR summary + methods legend. Register the FDR term only when its
|
||||
# summary is emitted, so the glossary never lists an unreferenced entry.
|
||||
fdr_text = _fdr_text(corr, mark_term=mark_term)
|
||||
if fdr_text:
|
||||
if gloss is not None:
|
||||
label, definition = _TERM_DEFS["fdr"]
|
||||
gloss.add("fdr", label, definition)
|
||||
blocks.append(model.Markdown(text=fdr_text))
|
||||
methods = _methods_block(corr)
|
||||
if methods is not None:
|
||||
|
||||
@@ -173,3 +173,124 @@ def test_anticorte_matriz_ancha_y_etiquetas_largas_no_se_cortan():
|
||||
assert rx["path"] == pptx and os.path.exists(pptx) and rx["n_slides"] >= 1
|
||||
# A short, unbreakable fragment of the long label survives the wrap.
|
||||
assert "azufre" in _pdf_text(pdf)
|
||||
|
||||
|
||||
def _raw_numeric_for_profile(n: int = 80) -> dict:
|
||||
"""Row-aligned raw numeric sample matching the signed pairs of _profile().
|
||||
|
||||
Builds columns with a clear, deterministic shape so the relationship-type
|
||||
classifier has something unambiguous to label:
|
||||
- density vs alcohol: strong negative linear (the top-negative pair).
|
||||
- alcohol vs quality: positive linear.
|
||||
- ph, fixed_acidity, sulphates: filler columns for the remaining pairs.
|
||||
"""
|
||||
import math as _m
|
||||
|
||||
alcohol = [8.0 + 0.05 * i for i in range(n)]
|
||||
density = [1.0 - 0.002 * a for a in alcohol] # neg linear vs alcohol
|
||||
quality = [3.0 + 0.4 * a + (0.1 if i % 2 else -0.1) # pos linear vs alcohol
|
||||
for i, a in enumerate(alcohol)]
|
||||
ph = [3.0 + 0.3 * _m.sin(i / 5.0) for i in range(n)]
|
||||
fixed_acidity = [7.0 - 0.5 * p for p in ph] # neg linear vs ph
|
||||
sulphates = [0.5 + 0.01 * (i % 7) for i in range(n)]
|
||||
return {
|
||||
"alcohol": alcohol, "density": density, "quality": quality,
|
||||
"ph": ph, "fixed_acidity": fixed_acidity, "sulphates": sulphates,
|
||||
}
|
||||
|
||||
|
||||
def test_golden_scatters_de_pares_num_num_con_tipo_de_relacion():
|
||||
"""Con ctx['raw_numeric'], el capítulo añade scatters (Figure dentro de Group)
|
||||
de los pares num-num más fuertes, cada uno con su etiqueta de tipo en texto."""
|
||||
from datascience.automatic_eda.model import Group
|
||||
|
||||
ctx = {"raw_numeric": _raw_numeric_for_profile()}
|
||||
ch = build_correlacion(_profile(), ctx)
|
||||
assert ch is not None
|
||||
groups = [b for b in ch.blocks if isinstance(b, Group)]
|
||||
assert groups, "debe emitir al menos un Group con scatter"
|
||||
# Cada Group lleva su figura (lazy) y una nota de texto con el tipo.
|
||||
for g in groups:
|
||||
gkinds = [b.kind for b in g.blocks]
|
||||
assert "figure" in gkinds and "markdown" in gkinds
|
||||
# La sección y la etiqueta de tipo aparecen como texto plano (extraíble).
|
||||
headings = " ".join(b.text for b in ch.blocks if b.kind == "heading")
|
||||
assert "Relaciones más fuertes" in headings
|
||||
body = " ".join(b.text for g in groups for b in g.blocks
|
||||
if b.kind == "markdown")
|
||||
assert any(t in body for t in
|
||||
("lineal", "polinómica", "monótona", "sin forma"))
|
||||
# El par num-num más fuerte (density ↔ alcohol) tiene scatter; el par cat-cat
|
||||
# (region ↔ type) NO — no es numérico.
|
||||
assert "density" in body or "alcohol" in body
|
||||
assert "region" not in body and "type" not in body
|
||||
|
||||
|
||||
def test_golden_pdf_muestra_scatters_con_etiqueta_de_tipo():
|
||||
"""En el PDF, el capítulo Correlación incluye los scatters y su etiqueta de
|
||||
tipo en texto seleccionable (pdftotext la encuentra)."""
|
||||
prof = _profile()
|
||||
ctx = {"raw_numeric": _raw_numeric_for_profile()}
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
pdf = os.path.join(d, "corr_scatter.pdf")
|
||||
rp = render_automatic_eda_pdf(prof, pdf, {"title": "EDA — wine",
|
||||
"ctx": ctx})
|
||||
assert rp["path"] == pdf and rp["n_pages"] >= 1
|
||||
txt = _pdf_text(pdf)
|
||||
assert "Relaciones" in txt and "scatter" in txt.lower()
|
||||
# Alguna etiqueta de tipo de relación, en texto.
|
||||
assert any(t in txt for t in
|
||||
("lineal", "polin", "monóton", "monoton", "sin forma"))
|
||||
|
||||
|
||||
def test_edge_sin_raw_numeric_omite_scatters_sin_lanzar():
|
||||
"""profile lite / ctx None: sin raw_numeric el capítulo omite los scatters
|
||||
pero sigue emitiendo matriz + tablas (no lanza)."""
|
||||
from datascience.automatic_eda.model import Group
|
||||
|
||||
for ctx in (None, {}, {"raw_numeric": None}, {"raw_numeric": {}}):
|
||||
ch = build_correlacion(_profile(), ctx)
|
||||
assert ch is not None
|
||||
assert not [b for b in ch.blocks if isinstance(b, Group)]
|
||||
# La matriz y al menos una tabla top siguen presentes.
|
||||
assert any(b.kind == "figure" for b in ch.blocks)
|
||||
assert any(b.kind == "data_table" for b in ch.blocks)
|
||||
|
||||
|
||||
def test_edge_par_sin_columna_cruda_se_omite_sin_lanzar():
|
||||
"""Si un par seleccionado no tiene su columna en raw_numeric, se omite ese
|
||||
par (no lanza); los demás scatters se construyen igual."""
|
||||
from datascience.automatic_eda.model import Group
|
||||
|
||||
raw = _raw_numeric_for_profile()
|
||||
raw.pop("density", None) # rompe el par density ↔ alcohol
|
||||
ch = build_correlacion(_profile(), {"raw_numeric": raw})
|
||||
assert ch is not None
|
||||
groups = [b for b in ch.blocks if isinstance(b, Group)]
|
||||
body = " ".join(b.text for g in groups for b in g.blocks
|
||||
if b.kind == "markdown")
|
||||
# density desaparece de los scatters; otros pares (p.ej. ph↔fixed_acidity,
|
||||
# alcohol↔quality) pueden seguir presentes sin error.
|
||||
assert "density" not in body
|
||||
|
||||
|
||||
def test_glosario_engancha_metodos_y_fdr():
|
||||
"""Mejora 4b: los métodos de correlación (Pearson, Spearman, Cramér's V,
|
||||
razón de correlación) y la corrección por comparaciones múltiples (FDR) se
|
||||
registran en el colector compartido y se marcan clicables en el cuerpo. Sin
|
||||
colector en ctx, el capítulo degrada y no marca nada."""
|
||||
from datascience.automatic_eda.model import GlossaryCollector
|
||||
|
||||
g = GlossaryCollector()
|
||||
ch = build_correlacion(_profile(), {"glossary": g})
|
||||
assert ch is not None
|
||||
keys = {t["key"] for t in g.terms()}
|
||||
assert {"pearson", "spearman", "cramers_v", "correlation_ratio", "fdr"} <= keys
|
||||
body = " ".join(b.text for b in ch.blocks if b.kind == "markdown")
|
||||
for k in ("pearson", "spearman", "cramers_v", "correlation_ratio", "fdr"):
|
||||
assert f"[[term:{k}]]" in body, k
|
||||
|
||||
# Sin colector: degrada limpio (ningún marcador en el cuerpo).
|
||||
ch2 = build_correlacion(_profile(), {})
|
||||
body2 = " ".join(b.text for b in ch2.blocks if b.kind == "markdown")
|
||||
assert "[[term:" not in body2
|
||||
|
||||
@@ -0,0 +1,594 @@
|
||||
"""Missingness chapter (MISSINGNESS) — patterns of missing data.
|
||||
|
||||
Complements the CALIDAD chapter: where CALIDAD reports *how much* is missing per
|
||||
column (the null percentage that lowers the completeness score), this chapter
|
||||
reports the **pattern** of the missing data — whether columns tend to be missing
|
||||
*together* (co-occurrence of absences) or independently. That distinction is what
|
||||
separates data that is missing completely at random ([[term:mcar]]MCAR[[/term]])
|
||||
from data missing as a function of another variable ([[term:mar]]MAR[[/term]]),
|
||||
which is the key question to settle before imputing or modelling.
|
||||
|
||||
The chapter activates only when the table actually has missing data (at least one
|
||||
column with a null in the aggregated profile); otherwise it returns ``None`` and
|
||||
disappears from the document.
|
||||
|
||||
Sections, in order:
|
||||
|
||||
1. **Resumen global** — % of missing cells in the dataset, number of columns with
|
||||
nulls, and complete rows (no missing) vs incomplete rows (≥1 missing).
|
||||
2. **Ranking por columna** — columns sorted by their null percentage, with a
|
||||
horizontal bar figure.
|
||||
3. **Co-ocurrencia de ausencias** — the correlation of the binary is-null masks
|
||||
between columns (which columns tend to be missing together): a heatmap plus a
|
||||
table of the top column pairs that co-miss.
|
||||
4. **Patrones de fila** — the most frequent "which columns are missing together"
|
||||
row patterns, in the style of missingno's pattern matrix.
|
||||
5. **Lectura MCAR/MAR** — an interpretive, *exploratory* note (not a confirmatory
|
||||
test such as Little's) reading the absence correlations as a hint of MCAR
|
||||
(independent absences) vs MAR (co-occurring absences).
|
||||
|
||||
The aggregate per-column null counts come from the ``eda`` group ``TableProfile``
|
||||
(``columns[i]['null_count'] / 'null_pct'`` and the table-level ``null_cell_pct``).
|
||||
The per-row is-null mask needed for co-occurrence is built from raw data: a single
|
||||
DuckDB push-down over ``ctx['db_path'] / ctx['table']`` (same pattern as the
|
||||
AGREGACION chapter) covering ALL columns, with a fallback to the numeric-only
|
||||
``ctx['raw_numeric']`` when no database is reachable. All the heavy lifting is
|
||||
delegated to pure registry functions (``missingness_overview``,
|
||||
``missingness_correlation``, ``missingness_row_patterns``) and two figure helpers
|
||||
(``missingness_rank_bar_figure``, ``missingness_corr_heatmap_figure``); every one
|
||||
is imported lazily and degrades to an honest note so this chapter never raises.
|
||||
|
||||
Contract: build_<id>(profile, ctx) -> Chapter | None ; CHAPTER_VERSION = "x.y.z".
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
CHAPTER_ID = "missingness"
|
||||
CHAPTER_TITLE = "Datos faltantes"
|
||||
|
||||
# Sample cap for the per-row is-null mask push-down. Co-occurrence and row
|
||||
# patterns are computed on this sample; the global % of missing cells and the
|
||||
# per-column ranking come from the (exact) aggregated profile instead.
|
||||
MASK_SAMPLE = 5000
|
||||
# Thresholds for the MCAR/MAR heuristic note. A pair counts as a *strong*
|
||||
# co-occurrence when the absence correlation alone is high; as a *partial*
|
||||
# co-occurrence when the absences overlap materially (high Jaccard) even if the
|
||||
# Pearson correlation is modest — the usual case when one column is missing far
|
||||
# more often than the other (e.g. Cabin 77% vs Age 20% in Titanic), which dilutes
|
||||
# the correlation while the rows still co-miss in absolute terms.
|
||||
_CORR_STRONG = 0.30
|
||||
_JACCARD_NOTABLE = 0.20
|
||||
# Rows shown in the top-pairs and row-patterns tables (bounded, never silently
|
||||
# truncated: the table note reports the full count).
|
||||
_TOP_PAIRS = 12
|
||||
_TOP_PATTERNS = 12
|
||||
# Truncate long column names in tables (the renderer also wraps).
|
||||
_LABEL_MAX = 28
|
||||
|
||||
# Glossary terms this chapter explains (contract §11.1). Registered in the shared
|
||||
# collector and marked clickable on their first appearance.
|
||||
_TERMS = {
|
||||
"missingness": (
|
||||
"Patrón de datos faltantes (missingness)",
|
||||
"El patrón con el que faltan los datos: cuánto falta, en qué columnas y "
|
||||
"si las ausencias de unas columnas coinciden (co-ocurren) con las de "
|
||||
"otras. Analizarlo —no solo contar nulos— distingue datos que faltan al "
|
||||
"azar (MCAR) de los que faltan en función de otra variable (MAR), lo que "
|
||||
"decide cómo imputar o si descartar filas sin sesgar el análisis.",
|
||||
),
|
||||
"mcar": (
|
||||
"MCAR (Missing Completely At Random)",
|
||||
"Los valores faltan de forma independiente de cualquier dato, observado o "
|
||||
"no: las ausencias de unas columnas no se relacionan entre sí ni con los "
|
||||
"valores. Es el caso más benigno —descartar filas o imputar la media no "
|
||||
"introduce sesgo—, pero rara vez se cumple del todo en datos reales.",
|
||||
),
|
||||
"mar": (
|
||||
"MAR (Missing At Random)",
|
||||
"La probabilidad de que un valor falte depende de OTRAS variables "
|
||||
"observadas (p. ej. una medición que falta más en cierto grupo). Las "
|
||||
"ausencias co-ocurren entre columnas o se relacionan con los valores de "
|
||||
"otras; imputar exige condicionar en esas variables para no sesgar. La "
|
||||
"co-ocurrencia fuerte de ausencias es un indicio (exploratorio) de MAR.",
|
||||
),
|
||||
}
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Small defensive formatters (own copy: the chapter never imports siblings).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _fmt_int(value) -> str:
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
return f"{int(round(float(value))):,}".replace(",", ".")
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
|
||||
|
||||
def _fmt_pct(value, decimals: int = 1) -> str:
|
||||
"""Format an already-0-100 value as a percentage. None -> placeholder."""
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
return f"{float(value):.{decimals}f}%"
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
|
||||
|
||||
def _fmt_num(value, decimals: int = 3) -> str:
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
f = float(value)
|
||||
except (TypeError, ValueError):
|
||||
return model._safe_str(value)
|
||||
if f != f: # NaN
|
||||
return "—"
|
||||
text = f"{f:.{decimals}f}".rstrip("0").rstrip(".")
|
||||
return text if text else "0"
|
||||
|
||||
|
||||
def _truncate(text, limit: int = _LABEL_MAX) -> str:
|
||||
s = model._safe_str(text)
|
||||
if len(s) <= limit:
|
||||
return s
|
||||
return s[: max(1, limit - 1)].rstrip() + "…"
|
||||
|
||||
|
||||
def _term(key: str, label: str, mark: bool) -> str:
|
||||
if mark:
|
||||
return f"[[term:{key}]]**{label}**[[/term]]"
|
||||
return f"**{label}**"
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Profile reads (exact, all rows).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _null_count_of(col: dict):
|
||||
"""Best-effort null count of a column: ``null_count`` or null_pct*n_rows."""
|
||||
nc = col.get("null_count")
|
||||
if isinstance(nc, (int, float)) and not isinstance(nc, bool):
|
||||
return int(nc)
|
||||
np_ = col.get("null_pct")
|
||||
nr = col.get("n_rows")
|
||||
if isinstance(np_, (int, float)) and isinstance(nr, (int, float)):
|
||||
return int(round(float(np_) * float(nr)))
|
||||
return 0
|
||||
|
||||
|
||||
def _columns_with_nulls(profile: dict):
|
||||
"""Return ``[(name, null_count, null_pct_0_100)]`` for columns with nulls,
|
||||
sorted by null percentage descending. Reads the aggregated profile (exact)."""
|
||||
cols = profile.get("columns") or []
|
||||
out = []
|
||||
for c in cols:
|
||||
if not isinstance(c, dict):
|
||||
continue
|
||||
nc = _null_count_of(c)
|
||||
if nc <= 0:
|
||||
continue
|
||||
np_ = c.get("null_pct")
|
||||
nr = c.get("n_rows") or profile.get("n_rows")
|
||||
if isinstance(np_, (int, float)) and not isinstance(np_, bool):
|
||||
pct = float(np_) * 100.0 if np_ <= 1.0 else float(np_)
|
||||
elif nr:
|
||||
pct = nc / float(nr) * 100.0
|
||||
else:
|
||||
pct = None
|
||||
out.append((c.get("name") or "(col)", nc, pct))
|
||||
out.sort(key=lambda t: (t[2] if t[2] is not None else -1.0), reverse=True)
|
||||
return out
|
||||
|
||||
|
||||
def _global_missing_pct(profile: dict):
|
||||
"""Table-level % of missing cells (0-100), exact, from the profile."""
|
||||
v = profile.get("null_cell_pct")
|
||||
if isinstance(v, (int, float)) and not isinstance(v, bool):
|
||||
return float(v) * 100.0 if v <= 1.0 else float(v)
|
||||
return None
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Per-row is-null mask (sample): DuckDB push-down, fallback to raw_numeric.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _build_query_fn(ctx: dict):
|
||||
"""Return ``(query_fn, table)`` for a DuckDB-backed ctx, or ``(None, None)``.
|
||||
|
||||
Mirrors build_eda_render_ctx: a read-only closure over the registry wrapper.
|
||||
Only DuckDB is supported here; any other backend degrades to raw_numeric."""
|
||||
db_path = ctx.get("db_path")
|
||||
table = ctx.get("table")
|
||||
if not db_path or not table:
|
||||
return None, None
|
||||
try:
|
||||
from infra import duckdb_query_readonly
|
||||
except Exception: # noqa: BLE001 — wrapper unavailable -> degrade.
|
||||
return None, None
|
||||
|
||||
def query_fn(sql):
|
||||
return duckdb_query_readonly(db_path, sql)
|
||||
|
||||
return query_fn, table
|
||||
|
||||
|
||||
def _null_mask(profile: dict, ctx: dict):
|
||||
"""Build the per-row is-null mask ``{col: [0/1, ...]}``.
|
||||
|
||||
Tries a single DuckDB push-down over ALL columns first (so categorical
|
||||
columns like Cabin are covered, not only numeric ones); falls back to the
|
||||
numeric-only ``ctx['raw_numeric']`` (None -> missing); returns ``(None, 0,
|
||||
None)`` when neither is reachable. Never raises.
|
||||
Returns ``(mask, n_sampled, source)`` with source in {"db","raw_numeric"}.
|
||||
"""
|
||||
cols = profile.get("columns") or []
|
||||
names = [c.get("name") for c in cols
|
||||
if isinstance(c, dict) and c.get("name")]
|
||||
# 1) DuckDB push-down over every column (covers categoricals too).
|
||||
query_fn, table = _build_query_fn(ctx)
|
||||
if query_fn is not None and names:
|
||||
try:
|
||||
from datascience.extract_null_mask import extract_null_mask
|
||||
|
||||
res = extract_null_mask(query_fn, table, names, max_rows=MASK_SAMPLE)
|
||||
if isinstance(res, dict) and res.get("status") == "ok":
|
||||
mask = res.get("mask") or {}
|
||||
if mask:
|
||||
return mask, int(res.get("n") or 0), "db"
|
||||
except Exception: # noqa: BLE001 — degrade to raw_numeric.
|
||||
pass
|
||||
# 2) Fallback: numeric-only mask derived from raw_numeric (None -> missing).
|
||||
rn = ctx.get("raw_numeric")
|
||||
if isinstance(rn, dict) and rn:
|
||||
mask = {}
|
||||
for col, vals in rn.items():
|
||||
if isinstance(vals, (list, tuple)):
|
||||
mask[col] = [1 if v is None else 0 for v in vals]
|
||||
if mask:
|
||||
n = max((len(v) for v in mask.values()), default=0)
|
||||
return mask, n, "raw_numeric"
|
||||
return None, 0, None
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Lazy registry delegations (each degrades to None on any failure).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _overview(mask: dict):
|
||||
try:
|
||||
from datascience.missingness_overview import missingness_overview
|
||||
|
||||
out = missingness_overview(mask)
|
||||
return out if isinstance(out, dict) else None
|
||||
except Exception: # noqa: BLE001
|
||||
return None
|
||||
|
||||
|
||||
def _correlation(mask: dict, top_k: int):
|
||||
try:
|
||||
from datascience.missingness_correlation import missingness_correlation
|
||||
|
||||
out = missingness_correlation(mask, top_k=top_k)
|
||||
return out if isinstance(out, dict) else None
|
||||
except Exception: # noqa: BLE001
|
||||
return None
|
||||
|
||||
|
||||
def _row_patterns(mask: dict, top_n: int):
|
||||
try:
|
||||
from datascience.missingness_row_patterns import missingness_row_patterns
|
||||
|
||||
out = missingness_row_patterns(mask, top_n=top_n)
|
||||
return out if isinstance(out, dict) else None
|
||||
except Exception: # noqa: BLE001
|
||||
return None
|
||||
|
||||
|
||||
def _rank_bar_make(names, pcts, title):
|
||||
def make():
|
||||
try:
|
||||
from datascience.missingness_rank_bar_figure import (
|
||||
missingness_rank_bar_figure,
|
||||
)
|
||||
|
||||
return missingness_rank_bar_figure(names, pcts, title=title)
|
||||
except Exception: # noqa: BLE001 — minimal fallback figure.
|
||||
return _fallback_fig("ranking de nulos no disponible")
|
||||
|
||||
return make
|
||||
|
||||
|
||||
def _heatmap_make(matrix, labels, title):
|
||||
def make():
|
||||
try:
|
||||
from datascience.missingness_corr_heatmap_figure import (
|
||||
missingness_corr_heatmap_figure,
|
||||
)
|
||||
|
||||
return missingness_corr_heatmap_figure(matrix, labels, title=title)
|
||||
except Exception: # noqa: BLE001 — minimal fallback figure.
|
||||
return _fallback_fig("heatmap de co-ocurrencia no disponible")
|
||||
|
||||
return make
|
||||
|
||||
|
||||
def _fallback_fig(message: str):
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
from matplotlib.figure import Figure
|
||||
|
||||
fig = Figure(figsize=(5.0, 2.2))
|
||||
ax = fig.add_subplot(111)
|
||||
ax.text(0.5, 0.5, message, ha="center", va="center")
|
||||
ax.axis("off")
|
||||
return fig
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Block builders.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _summary_block(profile: dict, with_nulls: list, overview, sampled, n_total):
|
||||
rows = []
|
||||
gpct = _global_missing_pct(profile)
|
||||
rows.append(("Celdas faltantes (global)", _fmt_pct(gpct)))
|
||||
rows.append(("Columnas con faltantes", str(len(with_nulls))))
|
||||
all_null = profile.get("all_null_cols")
|
||||
if isinstance(all_null, (list, tuple)) and all_null:
|
||||
rows.append(("Columnas 100% faltantes", str(len(all_null))))
|
||||
if isinstance(overview, dict):
|
||||
cr = overview.get("complete_rows")
|
||||
ir = overview.get("incomplete_rows")
|
||||
suffix = ""
|
||||
if (isinstance(sampled, int) and isinstance(n_total, (int, float))
|
||||
and sampled and n_total and sampled < n_total):
|
||||
suffix = f" (sobre muestra de {_fmt_int(sampled)} filas)"
|
||||
if cr is not None:
|
||||
rows.append(("Filas completas (sin faltantes)",
|
||||
f"{_fmt_int(cr)} ({_fmt_pct(overview.get('complete_pct'))})"
|
||||
+ suffix))
|
||||
if ir is not None:
|
||||
rows.append(("Filas con ≥1 faltante",
|
||||
f"{_fmt_int(ir)} "
|
||||
f"({_fmt_pct(overview.get('incomplete_pct'))})" + suffix))
|
||||
return model.KVTable(rows=rows, title="Resumen de datos faltantes")
|
||||
|
||||
|
||||
def _ranking_block(with_nulls: list):
|
||||
header = ["Columna", "Faltantes", "% faltante"]
|
||||
rows = [[_truncate(n), _fmt_int(c), _fmt_pct(p)] for (n, c, p) in with_nulls]
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(
|
||||
header=header, rows=rows, title="Faltantes por columna",
|
||||
note="ordenado de más a menos faltante")
|
||||
|
||||
|
||||
def _ranking_figure(with_nulls: list):
|
||||
names = [n for (n, _, p) in with_nulls if p is not None]
|
||||
pcts = [p for (_, _, p) in with_nulls if p is not None]
|
||||
if not names:
|
||||
return None
|
||||
return model.Figure(
|
||||
make=_rank_bar_make(names, pcts, "% de valores faltantes por columna"),
|
||||
caption="Porcentaje de valores faltantes por columna (barras).")
|
||||
|
||||
|
||||
def _pairs_block(corr: dict):
|
||||
"""Top column pairs whose absences co-occur, as a table, or None."""
|
||||
pairs = (corr or {}).get("pairs") or []
|
||||
header = ["Columna A", "Columna B", "Corr. ausencia", "Co-faltan", "Jaccard"]
|
||||
rows = []
|
||||
for p in pairs[:_TOP_PAIRS]:
|
||||
if not isinstance(p, dict):
|
||||
continue
|
||||
rows.append([
|
||||
_truncate(p.get("a")),
|
||||
_truncate(p.get("b")),
|
||||
_fmt_num(p.get("corr")),
|
||||
_fmt_int(p.get("co_missing")),
|
||||
_fmt_num(p.get("jaccard")),
|
||||
])
|
||||
if not rows:
|
||||
return None
|
||||
shown = len(rows)
|
||||
total = len(pairs)
|
||||
note = ("correlación de las máscaras is-null entre columnas; "
|
||||
"«Co-faltan» = nº de filas en que ambas faltan a la vez")
|
||||
if total > shown:
|
||||
note += f" — top {shown} de {total} pares"
|
||||
return model.DataTable(header=header, rows=rows,
|
||||
title="Pares de columnas que co-faltan", note=note)
|
||||
|
||||
|
||||
def _heatmap_block(corr: dict):
|
||||
cols = (corr or {}).get("columns") or []
|
||||
matrix = (corr or {}).get("matrix") or []
|
||||
if len(cols) < 2 or not matrix:
|
||||
return None
|
||||
labels = [_truncate(c, 16) for c in cols]
|
||||
return model.Figure(
|
||||
make=_heatmap_make(matrix, labels, "Co-ocurrencia de ausencias"),
|
||||
caption=("Correlación de las ausencias entre columnas (azul = faltan "
|
||||
"juntas; rojo = cuando una falta la otra tiende a estar)."))
|
||||
|
||||
|
||||
def _patterns_block(patterns_res: dict):
|
||||
patterns = (patterns_res or {}).get("patterns") or []
|
||||
header = ["Columnas que faltan juntas", "Filas", "%"]
|
||||
rows = []
|
||||
for p in patterns[:_TOP_PATTERNS]:
|
||||
if not isinstance(p, dict):
|
||||
continue
|
||||
cols = p.get("missing_cols") or []
|
||||
if cols:
|
||||
label = ", ".join(_truncate(c, 18) for c in cols)
|
||||
else:
|
||||
label = "(fila completa — sin faltantes)"
|
||||
rows.append([label, _fmt_int(p.get("n_rows")), _fmt_pct(p.get("pct"))])
|
||||
if not rows:
|
||||
return None
|
||||
total = (patterns_res or {}).get("n_patterns")
|
||||
shown = len(rows)
|
||||
note = "cada fila es un patrón de «qué columnas faltan juntas»"
|
||||
if isinstance(total, int) and total > shown:
|
||||
note += f" — top {shown} de {total} patrones distintos"
|
||||
return model.DataTable(header=header, rows=rows,
|
||||
title="Patrones de fila más comunes", note=note)
|
||||
|
||||
|
||||
def _mcar_mar_note(corr: dict, mark: bool):
|
||||
"""Interpretive, exploratory MCAR/MAR note from the absence correlations.
|
||||
|
||||
Reads the absence correlations at two levels so the verdict never contradicts
|
||||
the visible evidence: a *strong* correlation flags a clear non-random (MAR)
|
||||
pattern; a *partial* overlap (many rows co-miss — high Jaccard — even if the
|
||||
correlation is diluted by one column being missing far more often) flags a
|
||||
localized possible-MAR and cites the concrete co-missing pair; only when
|
||||
neither holds does it read the absences as compatible with MCAR."""
|
||||
|
||||
def _pairs_with(attr_ok):
|
||||
out = []
|
||||
for p in (corr or {}).get("pairs") or []:
|
||||
if isinstance(p, dict) and attr_ok(p):
|
||||
out.append(p)
|
||||
return out
|
||||
|
||||
def _cf(v):
|
||||
try:
|
||||
return float(v)
|
||||
except (TypeError, ValueError):
|
||||
return 0.0
|
||||
|
||||
strong = _pairs_with(lambda p: abs(_cf(p.get("corr"))) >= _CORR_STRONG)
|
||||
partial = _pairs_with(
|
||||
lambda p: _cf(p.get("corr")) > 0 and _cf(p.get("jaccard")) >= _JACCARD_NOTABLE)
|
||||
mcar = _term("mcar", "MCAR", mark)
|
||||
mar = _term("mar", "MAR", mark)
|
||||
head = (
|
||||
"**Lectura exploratoria MCAR/MAR.** Esta es una heurística basada en la "
|
||||
"correlación de las ausencias entre columnas, NO un test confirmatorio "
|
||||
"(como el de Little); orienta, no demuestra. ")
|
||||
if strong:
|
||||
top = strong[0]
|
||||
ev = (f"«{model._safe_str(top.get('a'))}» y "
|
||||
f"«{model._safe_str(top.get('b'))}» "
|
||||
f"(corr {_fmt_num(top.get('corr'))})")
|
||||
body = (
|
||||
f"Hay ausencias que co-ocurren con fuerza —{ev}—: las columnas no "
|
||||
f"faltan de forma independiente, lo que es un indicio de un patrón no "
|
||||
f"aleatorio ({mar}). Antes de imputar o descartar filas conviene "
|
||||
f"comprobar si la ausencia depende de otra variable observada; en ese "
|
||||
f"caso la imputación debería condicionar en ella para no sesgar.")
|
||||
elif partial:
|
||||
top = max(partial, key=lambda p: _cf(p.get("jaccard")))
|
||||
ev = (f"«{model._safe_str(top.get('a'))}» y "
|
||||
f"«{model._safe_str(top.get('b'))}» faltan a la vez en "
|
||||
f"{_fmt_int(top.get('co_missing'))} filas "
|
||||
f"(Jaccard {_fmt_num(top.get('jaccard'))})")
|
||||
body = (
|
||||
f"Hay co-ocurrencia parcial de ausencias —{ev}—: algunas columnas "
|
||||
f"tienden a faltar juntas aunque la correlación global sea modesta "
|
||||
f"(habitual cuando una columna falta mucho más que la otra). Es un "
|
||||
f"indicio de un posible patrón localizado no aleatorio ({mar}); "
|
||||
f"conviene revisar si esa ausencia depende de otra variable observada "
|
||||
f"antes de imputar, en lugar de asumir que faltan al azar.")
|
||||
else:
|
||||
body = (
|
||||
f"Las ausencias entre columnas no muestran correlación ni solape "
|
||||
f"relevante: parecen independientes, lo que es compatible con que "
|
||||
f"falten al azar ({mcar}). Aun así, la ausencia podría depender de "
|
||||
f"variables no observadas (la heurística no lo descarta).")
|
||||
return model.Markdown(text=head + body)
|
||||
|
||||
|
||||
def _intro_block(mark: bool, source):
|
||||
missingness = _term("missingness", "missingness", mark)
|
||||
text = (
|
||||
f"Este capítulo analiza el {missingness} de la tabla: no solo cuánto "
|
||||
"falta (eso lo cubre la calidad), sino DÓNDE falta y si las columnas "
|
||||
"faltan juntas. La co-ocurrencia de ausencias se calcula sobre la matriz "
|
||||
"binaria «is-null» por fila.")
|
||||
if source == "raw_numeric":
|
||||
text += (" Nota: no se pudo leer la tabla cruda completa, así que la "
|
||||
"co-ocurrencia se limita a las columnas numéricas disponibles.")
|
||||
return model.Markdown(text=text)
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Entry point.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def build_missingness(profile: dict, ctx: dict):
|
||||
"""Build the missingness Chapter, or None if the table has no missing data."""
|
||||
if not isinstance(profile, dict):
|
||||
profile = {}
|
||||
ctx = ctx or {}
|
||||
|
||||
with_nulls = _columns_with_nulls(profile)
|
||||
if not with_nulls:
|
||||
return None # no missing data anywhere -> chapter does not apply.
|
||||
|
||||
# Register glossary terms (if a collector is present) and mark them clickable.
|
||||
glossary = ctx.get("glossary")
|
||||
mark = False
|
||||
if isinstance(glossary, model.GlossaryCollector):
|
||||
for key, (label, definition) in _TERMS.items():
|
||||
glossary.add(key, label, definition)
|
||||
mark = True
|
||||
|
||||
# Per-row is-null mask (sample) for co-occurrence and row patterns.
|
||||
mask, sampled, source = _null_mask(profile, ctx)
|
||||
overview = _overview(mask) if mask else None
|
||||
n_total = profile.get("n_rows")
|
||||
|
||||
blocks = [
|
||||
model.Heading(text="Cuánto y dónde faltan datos", level=2),
|
||||
_intro_block(mark, source),
|
||||
_summary_block(profile, with_nulls, overview, sampled, n_total),
|
||||
model.Heading(text="Faltantes por columna", level=2),
|
||||
]
|
||||
ranking = _ranking_block(with_nulls)
|
||||
if ranking is not None:
|
||||
blocks.append(ranking)
|
||||
rank_fig = _ranking_figure(with_nulls)
|
||||
if rank_fig is not None:
|
||||
blocks.append(rank_fig)
|
||||
|
||||
# Co-occurrence + row patterns need the per-row mask. Without it, say so.
|
||||
if not mask:
|
||||
blocks.append(model.Note(
|
||||
"No se pudo construir la matriz «is-null» por fila (sin acceso a los "
|
||||
"datos crudos), así que no se analiza la co-ocurrencia de ausencias "
|
||||
"ni los patrones de fila en este informe."))
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
corr = _correlation(mask, _TOP_PAIRS) or {}
|
||||
co_blocks = [model.Heading(text="Co-ocurrencia de ausencias", level=2)]
|
||||
heatmap = _heatmap_block(corr)
|
||||
if heatmap is not None:
|
||||
co_blocks.append(heatmap)
|
||||
pairs = _pairs_block(corr)
|
||||
if pairs is not None:
|
||||
co_blocks.append(pairs)
|
||||
if heatmap is None and pairs is None:
|
||||
co_blocks.append(model.Note(
|
||||
"Ninguna pareja de columnas comparte ausencias con variación "
|
||||
"suficiente para correlacionarlas (p. ej. una sola columna con "
|
||||
"faltantes), así que no hay co-ocurrencia que mostrar."))
|
||||
# Keep the co-occurrence heading next to its heatmap and table.
|
||||
blocks.append(model.Group(blocks=co_blocks))
|
||||
|
||||
patterns_res = _row_patterns(mask, _TOP_PATTERNS) or {}
|
||||
patterns = _patterns_block(patterns_res)
|
||||
if patterns is not None:
|
||||
blocks.append(model.Heading(text="Patrones de fila", level=2))
|
||||
blocks.append(patterns)
|
||||
|
||||
blocks.append(model.Heading(text="Lectura MCAR / MAR", level=2))
|
||||
blocks.append(_mcar_mar_note(corr, mark))
|
||||
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
@@ -0,0 +1,162 @@
|
||||
"""Tests for the MISSINGNESS chapter.
|
||||
|
||||
Covers the Definition of Done for this chapter:
|
||||
* Activates (non-None Chapter with the expected sections) when the profile has
|
||||
missing data, building the co-occurrence from the per-row is-null mask.
|
||||
* Returns None when the table has no missing data at all (edge case).
|
||||
* Registers the MCAR/MAR/missingness glossary terms.
|
||||
* The DuckDB push-down path covers categorical columns (not only numeric),
|
||||
so a categorical column that co-misses with a numeric one is detected.
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
_HERE = os.path.dirname(os.path.abspath(__file__))
|
||||
_FUNCTIONS = os.path.abspath(os.path.join(_HERE, "..", "..", "..")) # python/functions
|
||||
if _FUNCTIONS not in sys.path:
|
||||
sys.path.insert(0, _FUNCTIONS)
|
||||
|
||||
from datascience.automatic_eda import model # noqa: E402
|
||||
from datascience.automatic_eda.chapters.missingness import ( # noqa: E402
|
||||
build_missingness,
|
||||
)
|
||||
|
||||
|
||||
def _titles(chapter):
|
||||
"""Collect heading texts and table/figure titles for assertions."""
|
||||
out = []
|
||||
for b in chapter.blocks:
|
||||
kind = getattr(b, "kind", None)
|
||||
if kind == "heading":
|
||||
out.append(("heading", getattr(b, "text", "")))
|
||||
elif kind in ("data_table", "kv_table"):
|
||||
out.append((kind, getattr(b, "title", "")))
|
||||
elif kind == "group":
|
||||
for inner in getattr(b, "blocks", []):
|
||||
ik = getattr(inner, "kind", None)
|
||||
if ik == "heading":
|
||||
out.append(("heading", getattr(inner, "text", "")))
|
||||
elif ik in ("data_table", "kv_table"):
|
||||
out.append((ik, getattr(inner, "title", "")))
|
||||
elif ik == "figure":
|
||||
out.append(("figure", getattr(inner, "caption", "")))
|
||||
elif kind == "figure":
|
||||
out.append(("figure", getattr(b, "caption", "")))
|
||||
return out
|
||||
|
||||
|
||||
def _all_text(chapter):
|
||||
parts = []
|
||||
def walk(blocks):
|
||||
for b in blocks:
|
||||
for attr in ("text", "title", "note", "caption"):
|
||||
v = getattr(b, attr, None)
|
||||
if v:
|
||||
parts.append(str(v))
|
||||
if getattr(b, "kind", None) == "group":
|
||||
walk(getattr(b, "blocks", []))
|
||||
walk(chapter.blocks)
|
||||
return "\n".join(parts)
|
||||
|
||||
|
||||
def test_returns_none_when_no_missing_data():
|
||||
profile = {
|
||||
"n_rows": 4,
|
||||
"null_cell_pct": 0.0,
|
||||
"columns": [
|
||||
{"name": "a", "null_count": 0, "null_pct": 0.0, "n_rows": 4},
|
||||
{"name": "b", "null_count": 0, "null_pct": 0.0, "n_rows": 4},
|
||||
],
|
||||
}
|
||||
assert build_missingness(profile, {}) is None
|
||||
|
||||
|
||||
def test_activates_with_cooccurrence_via_raw_numeric():
|
||||
# a and b are missing in EXACTLY the same rows (0,1,2) -> perfect absence
|
||||
# correlation. c has no nulls. No db_path -> the chapter falls back to the
|
||||
# numeric raw_numeric mask.
|
||||
profile = {
|
||||
"n_rows": 6,
|
||||
"null_cell_pct": (0.5 + 0.5 + 0.0) / 3.0,
|
||||
"columns": [
|
||||
{"name": "a", "null_count": 3, "null_pct": 0.5, "n_rows": 6},
|
||||
{"name": "b", "null_count": 3, "null_pct": 0.5, "n_rows": 6},
|
||||
{"name": "c", "null_count": 0, "null_pct": 0.0, "n_rows": 6},
|
||||
],
|
||||
}
|
||||
glossary = model.GlossaryCollector()
|
||||
ctx = {
|
||||
"raw_numeric": {
|
||||
"a": [None, None, None, 1.0, 2.0, 3.0],
|
||||
"b": [None, None, None, 4.0, 5.0, 6.0],
|
||||
},
|
||||
"glossary": glossary,
|
||||
}
|
||||
ch = build_missingness(profile, ctx)
|
||||
assert ch is not None
|
||||
assert ch.id == "missingness"
|
||||
assert ch.blocks
|
||||
|
||||
titles = _titles(ch)
|
||||
headings = {t for (k, t) in titles if k == "heading"}
|
||||
# Core sections present.
|
||||
assert any("Cuánto y dónde" in h for h in headings)
|
||||
assert any("Faltantes por columna" in h for h in headings)
|
||||
assert any("Co-ocurrencia" in h for h in headings)
|
||||
assert any("MCAR" in h for h in headings)
|
||||
# A summary KVTable, a ranking DataTable, a co-occurrence figure and the
|
||||
# pairs table all exist.
|
||||
kinds = {k for (k, _) in titles}
|
||||
assert "kv_table" in kinds
|
||||
assert "data_table" in kinds
|
||||
assert "figure" in kinds
|
||||
|
||||
# Glossary terms registered.
|
||||
keys = {t["key"] for t in glossary.terms()}
|
||||
assert {"missingness", "mcar", "mar"} <= keys
|
||||
|
||||
# The MCAR/MAR note reads the co-occurrence; with a perfect overlap it must
|
||||
# flag the non-random (MAR) reading.
|
||||
text = _all_text(ch)
|
||||
assert "MAR" in text
|
||||
|
||||
|
||||
def test_db_pushdown_covers_categorical_column(tmp_path):
|
||||
"""The is-null mask push-down must cover a categorical column, so a
|
||||
categorical that co-misses with a numeric one shows up in the pairs."""
|
||||
import duckdb
|
||||
|
||||
db = str(tmp_path / "miss.duckdb")
|
||||
con = duckdb.connect(db)
|
||||
con.execute("CREATE TABLE t (num1 DOUBLE, num2 DOUBLE, cat VARCHAR)")
|
||||
# num1 and cat are NULL together in the first 4 of 10 rows; num2 never null.
|
||||
rows = []
|
||||
for i in range(10):
|
||||
if i < 4:
|
||||
rows.append((None, float(i), None))
|
||||
else:
|
||||
rows.append((float(i), float(i), f"c{i}"))
|
||||
con.executemany("INSERT INTO t VALUES (?,?,?)", rows)
|
||||
con.close()
|
||||
|
||||
profile = {
|
||||
"n_rows": 10,
|
||||
"null_cell_pct": (0.4 + 0.0 + 0.4) / 3.0,
|
||||
"columns": [
|
||||
{"name": "num1", "null_count": 4, "null_pct": 0.4, "n_rows": 10},
|
||||
{"name": "num2", "null_count": 0, "null_pct": 0.0, "n_rows": 10},
|
||||
{"name": "cat", "null_count": 4, "null_pct": 0.4, "n_rows": 10},
|
||||
],
|
||||
}
|
||||
ctx = {"db_path": db, "table": "t", "glossary": model.GlossaryCollector()}
|
||||
ch = build_missingness(profile, ctx)
|
||||
assert ch is not None
|
||||
|
||||
# The pairs table must mention both num1 and cat (they co-miss perfectly),
|
||||
# which is only possible if the mask covered the categorical column.
|
||||
text = _all_text(ch)
|
||||
assert "num1" in text and "cat" in text
|
||||
# Co-occurrence section + a pairs data table exist.
|
||||
titles = _titles(ch)
|
||||
assert any("co-faltan" in (t or "").lower() for (k, t) in titles)
|
||||
@@ -6,15 +6,16 @@ normality}``). It renders, as structured markdown/tables/figures that the core
|
||||
paginator never cuts:
|
||||
|
||||
1. **Normalization note** — every multivariate model below standardizes the
|
||||
columns with z-score first; the chapter explains why (different scales would
|
||||
otherwise dominate distance/variance).
|
||||
columns with z-score first (the term is marked clickable; its definition
|
||||
lives in the GLOSARIO chapter, not inline).
|
||||
2. **PCA** — a scree plot (explained + cumulative variance, single Y axis) plus
|
||||
variance and top-loadings tables.
|
||||
3. **KMeans segments** — a PCA scatter **coloured by cluster** (its own
|
||||
page/slide), the cluster-size table, and a per-cluster LLM micro-analysis
|
||||
with a title for each segment.
|
||||
4. **Isolation Forest outliers** — a short explanation of how anomalous rows are
|
||||
isolated multivariately and how the threshold is chosen, plus the counts.
|
||||
4. **Isolation Forest outliers** — the multivariate anomaly counts and decision
|
||||
threshold (the method is marked clickable; its definition lives in the
|
||||
GLOSARIO chapter, not inline).
|
||||
5. **Normality** — per-column Jarque-Bera / D'Agostino / Shapiro verdicts.
|
||||
|
||||
The raw numeric data needed to colour the cluster scatter is **not** in the
|
||||
@@ -55,6 +56,62 @@ _CLUSTER_COLORS = [
|
||||
"#edc948", "#b07aa1", "#ff9da7", "#9c755f", "#bab0ac",
|
||||
]
|
||||
|
||||
# Glossary terms this chapter explains. Each is registered in the shared
|
||||
# collector (ctx['glossary']) and marked clickable on its first appearance — the
|
||||
# canonical two-step pattern (see ``cat_distr``): ``glossary.add(key, label,
|
||||
# definition)`` + the inline span ``[[term:KEY]]texto[[/term]]`` in a Markdown
|
||||
# block. A term is registered only when its section is actually rendered, so the
|
||||
# glossary never lists an entry no in-text appearance points to.
|
||||
_TERM_DEFS = {
|
||||
"zscore": (
|
||||
"Estandarización z-score",
|
||||
"Transformación que lleva cada columna numérica a media 0 y desviación "
|
||||
"típica 1: a cada valor le resta la media de su columna y lo divide por "
|
||||
"la desviación típica. Así variables con escalas muy distintas (euros "
|
||||
"frente a un ratio 0–1) pesan por igual en las distancias y la varianza."),
|
||||
"pca": (
|
||||
"PCA (componentes principales)",
|
||||
"El análisis de componentes principales resume muchas variables "
|
||||
"numéricas correlacionadas en pocos ejes nuevos (componentes), "
|
||||
"ortogonales entre sí y ordenados por la cantidad de varianza que "
|
||||
"capturan. Permite ver la estructura de los datos en 2D y saber cuántas "
|
||||
"dimensiones bastan para explicarlos."),
|
||||
"kmeans": (
|
||||
"KMeans (segmentación)",
|
||||
"Algoritmo de agrupamiento no supervisado que reparte las filas en k "
|
||||
"segmentos: asigna cada fila al centro (centroide) más cercano y recoloca "
|
||||
"los centroides de forma iterativa hasta minimizar la distancia interna "
|
||||
"de cada grupo. Aquí k se elige automáticamente."),
|
||||
"silhouette": (
|
||||
"Coeficiente de silueta (silhouette)",
|
||||
"Métrica de calidad de un agrupamiento, en el rango −1 a 1: para cada "
|
||||
"fila compara cómo de cerca está de su propio segmento frente al segmento "
|
||||
"vecino más próximo. Cuanto más alto el promedio, más compactos y "
|
||||
"separados están los segmentos."),
|
||||
"isolation_forest": (
|
||||
"Isolation Forest (anomalías)",
|
||||
"Algoritmo de detección de anomalías multivariante: construye árboles que "
|
||||
"parten el espacio con cortes aleatorios y mide cuántos cortes hacen "
|
||||
"falta para aislar cada fila. Las filas raras se aíslan con muy pocos "
|
||||
"cortes y se marcan como outliers según un umbral de contaminación."),
|
||||
}
|
||||
|
||||
|
||||
def _term(mark: bool, key: str, text: str) -> str:
|
||||
"""Wrap ``text`` as a clickable glossary span when ``mark`` is True.
|
||||
|
||||
The visible text is identical with or without the marker (the renderers strip
|
||||
it), so wrapping never changes line layout — it only adds the link.
|
||||
"""
|
||||
return f"[[term:{key}]]{text}[[/term]]" if mark else text
|
||||
|
||||
|
||||
def _register(gloss, key: str) -> None:
|
||||
"""Register term ``key`` in the collector (idempotent); no-op if gloss None."""
|
||||
if gloss is not None:
|
||||
label, definition = _TERM_DEFS[key]
|
||||
gloss.add(key, label, definition)
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Formatting helpers (mirror the overview chapter's defensive style).
|
||||
@@ -252,34 +309,33 @@ def _make_cluster_scatter(projection: dict):
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Section builders. Each returns a list of blocks (possibly empty).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _normalization_intro() -> list:
|
||||
def _normalization_intro(gloss=None, mark_term: bool = False) -> list:
|
||||
_register(gloss, "zscore")
|
||||
zscore = _term(mark_term, "zscore", "**estandarizan con z-score**")
|
||||
text = (
|
||||
"Estos modelos son **no supervisados**: buscan estructura latente sin "
|
||||
"una variable objetivo. Antes de aplicarlos, todas las columnas "
|
||||
"numéricas se **estandarizan con z-score** (cada valor menos la media, "
|
||||
"dividido por la desviación típica). Sin esta normalización, una "
|
||||
"variable con escala grande (p.ej. ingresos en euros) dominaría las "
|
||||
"distancias y la varianza frente a otra de escala pequeña (p.ej. un "
|
||||
"ratio entre 0 y 1), sesgando tanto el PCA como el KMeans. Tras la "
|
||||
"estandarización todas las variables pesan por igual."
|
||||
f"numéricas se {zscore}, para que todas pesen por igual con "
|
||||
"independencia de su escala."
|
||||
)
|
||||
return [model.Heading(text="Modelos no supervisados", level=1),
|
||||
model.Markdown(text=text)]
|
||||
|
||||
|
||||
def _pca_section(pca: dict) -> list:
|
||||
def _pca_section(pca: dict, gloss=None, mark_term: bool = False) -> list:
|
||||
if not _is_dict(pca) or not pca.get("explained_variance_ratio"):
|
||||
return []
|
||||
_register(gloss, "pca")
|
||||
blocks = [model.Heading(text="PCA — varianza explicada", level=2)]
|
||||
|
||||
n_used = pca.get("n_rows_used")
|
||||
n_feat = pca.get("n_features")
|
||||
intro = (
|
||||
f"El PCA resume {_fmt_num(n_feat)} variables numéricas en componentes "
|
||||
f"ortogonales ordenados por la varianza que capturan "
|
||||
f"({_fmt_num(n_used)} filas usadas tras eliminar nulos). El gráfico de "
|
||||
"sedimentación (scree) muestra cuánta varianza aporta cada componente y "
|
||||
"su acumulado: un codo marca cuántos componentes bastan."
|
||||
f"El {_term(mark_term, 'pca', 'PCA')} se aplica sobre "
|
||||
f"{_fmt_num(n_feat)} variables numéricas ({_fmt_num(n_used)} filas "
|
||||
"usadas tras eliminar nulos). El gráfico de sedimentación (scree) "
|
||||
"muestra cuánta varianza aporta cada componente y su acumulado: un "
|
||||
"codo marca cuántos componentes bastan."
|
||||
)
|
||||
blocks.append(model.Markdown(text=intro))
|
||||
|
||||
@@ -325,11 +381,14 @@ def _pca_section(pca: dict) -> list:
|
||||
return blocks
|
||||
|
||||
|
||||
def _kmeans_section(kmeans: dict, projection: dict, titles) -> list:
|
||||
def _kmeans_section(kmeans: dict, projection: dict, titles,
|
||||
gloss=None, mark_term: bool = False) -> list:
|
||||
has_km = _is_dict(kmeans) and kmeans.get("best_k")
|
||||
has_proj = _is_dict(projection) and projection.get("points")
|
||||
if not has_km and not has_proj:
|
||||
return []
|
||||
_register(gloss, "kmeans")
|
||||
_register(gloss, "silhouette")
|
||||
|
||||
blocks = [model.Heading(text="Segmentación (KMeans)", level=2)]
|
||||
|
||||
@@ -337,11 +396,12 @@ def _kmeans_section(kmeans: dict, projection: dict, titles) -> list:
|
||||
sil = (projection or {}).get("silhouette")
|
||||
if sil is None:
|
||||
sil = (kmeans or {}).get("silhouette")
|
||||
t_kmeans = _term(mark_term, "kmeans", "KMeans")
|
||||
t_sil = _term(mark_term, "silhouette", "*silhouette*")
|
||||
intro = (
|
||||
f"KMeans agrupa las filas en **{_fmt_num(best_k)} segmentos** elegidos "
|
||||
"automáticamente maximizando el coeficiente de *silhouette* "
|
||||
f"(**{_fmt_num(sil)}**, rango −1 a 1: cuanto más alto, segmentos más "
|
||||
"compactos y separados). Los segmentos se proyectan sobre el plano de "
|
||||
f"{t_kmeans} agrupa las filas en **{_fmt_num(best_k)} segmentos** "
|
||||
f"elegidos automáticamente por el coeficiente de {t_sil} "
|
||||
f"(**{_fmt_num(sil)}**). Los segmentos se proyectan sobre el plano de "
|
||||
"los dos primeros componentes principales para visualizarlos."
|
||||
)
|
||||
blocks.append(model.Markdown(text=intro))
|
||||
@@ -394,23 +454,21 @@ def _kmeans_section(kmeans: dict, projection: dict, titles) -> list:
|
||||
return blocks
|
||||
|
||||
|
||||
def _outliers_section(outliers: dict) -> list:
|
||||
def _outliers_section(outliers: dict, gloss=None, mark_term: bool = False) -> list:
|
||||
if not _is_dict(outliers) or outliers.get("n_outliers") is None:
|
||||
return []
|
||||
if outliers.get("note") and not outliers.get("n_rows_used"):
|
||||
# insufficient data — nothing meaningful to show.
|
||||
return []
|
||||
_register(gloss, "isolation_forest")
|
||||
blocks = [model.Heading(text="Detección de anomalías (Isolation Forest)",
|
||||
level=2)]
|
||||
isof = _term(mark_term, "isolation_forest", "**Isolation Forest**")
|
||||
explain = (
|
||||
"**Isolation Forest** detecta filas anómalas de forma *multivariante*: "
|
||||
"construye árboles que parten el espacio con cortes aleatorios y mide "
|
||||
"cuántos cortes hacen falta para aislar cada fila. Las filas raras "
|
||||
"(combinaciones de valores poco frecuentes considerando **todas las "
|
||||
"columnas a la vez**, no una sola) se aíslan con muy pocos cortes y "
|
||||
"obtienen un score bajo. El **umbral** de decisión separa las filas "
|
||||
"normales de las anómalas según la contaminación esperada del modelo: "
|
||||
"una fila es outlier cuando su score queda por debajo de ese umbral."
|
||||
f"{isof} marca filas anómalas de forma *multivariante*: combinaciones "
|
||||
"de valores poco frecuentes considerando **todas las columnas a la "
|
||||
"vez**, no una sola. La tabla resume cuántas se detectaron y el umbral "
|
||||
"de decisión empleado."
|
||||
)
|
||||
blocks.append(model.Markdown(text=explain))
|
||||
blocks.append(model.KVTable(rows=[
|
||||
@@ -484,15 +542,21 @@ def build_modelos(profile: dict, ctx: dict):
|
||||
(kmeans and kmeans.get("best_k")) or (projection and projection.get("points"))
|
||||
) else None
|
||||
|
||||
# Shared glossary collector: terms are registered + marked clickable inside
|
||||
# each section, only when that section actually renders (no orphan entries).
|
||||
glossary = ctx.get("glossary")
|
||||
gloss = glossary if isinstance(glossary, model.GlossaryCollector) else None
|
||||
mark_term = gloss is not None
|
||||
|
||||
sections = []
|
||||
sections += _pca_section(pca) if pca else []
|
||||
sections += _kmeans_section(kmeans, projection, titles)
|
||||
sections += _outliers_section(outliers) if outliers else []
|
||||
sections += _pca_section(pca, gloss, mark_term) if pca else []
|
||||
sections += _kmeans_section(kmeans, projection, titles, gloss, mark_term)
|
||||
sections += _outliers_section(outliers, gloss, mark_term) if outliers else []
|
||||
sections += _normality_section(normality) if normality else []
|
||||
|
||||
if not sections:
|
||||
return None # models block present but nothing renderable.
|
||||
|
||||
blocks = _normalization_intro() + sections
|
||||
blocks = _normalization_intro(gloss, mark_term) + sections
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
|
||||
@@ -257,3 +257,26 @@ def test_anticortes_tabla_normalidad_larga_no_corta():
|
||||
# Every column name survives (wrapped/split, never truncated).
|
||||
for i in (0, 19, 39):
|
||||
assert f"col_{i}" in txt
|
||||
|
||||
|
||||
def test_glosario_engancha_terminos_modelos():
|
||||
"""Mejora 4b: PCA, KMeans, silhouette, Isolation Forest y la estandarización
|
||||
z-score se registran en el colector compartido y se marcan clicables en el
|
||||
cuerpo. Sin colector en ctx, el capítulo degrada y no marca nada."""
|
||||
from datascience.automatic_eda.model import GlossaryCollector
|
||||
|
||||
g = GlossaryCollector()
|
||||
ctx = dict(_ctx_full())
|
||||
ctx["glossary"] = g
|
||||
ch = build_modelos(_profile(), ctx)
|
||||
assert ch is not None
|
||||
keys = {t["key"] for t in g.terms()}
|
||||
assert {"zscore", "pca", "kmeans", "silhouette", "isolation_forest"} <= keys
|
||||
body = " ".join(b.text for b in ch.blocks if b.kind == "markdown")
|
||||
for k in ("zscore", "pca", "kmeans", "silhouette", "isolation_forest"):
|
||||
assert f"[[term:{k}]]" in body, k
|
||||
|
||||
# Sin colector: degrada limpio (ningún marcador en el cuerpo).
|
||||
ch2 = build_modelos(_profile(), _ctx_full())
|
||||
body2 = " ".join(b.text for b in ch2.blocks if b.kind == "markdown")
|
||||
assert "[[term:" not in body2
|
||||
|
||||
@@ -1,9 +1,10 @@
|
||||
"""Numeric distributions chapter (NUM DISTR) for AutomaticEDA.
|
||||
|
||||
For every numeric column the chapter draws, as a single indivisible figure, a
|
||||
histogram with the **mean, median and ±1σ band drawn as reference lines** and a
|
||||
**Tukey boxplot right below it** sharing the same X axis — exactly the user
|
||||
requirement for this chapter. Each figure is emitted as a lazy ``Figure`` block
|
||||
histogram with the **mean, median and ±1σ band drawn as reference lines** (the
|
||||
legend reports the numeric value of the mean, the median **and the standard
|
||||
deviation σ**) and a **Tukey boxplot right below it** sharing the same X axis —
|
||||
exactly the user requirement for this chapter. Each figure is emitted as a lazy ``Figure`` block
|
||||
so the renderers rasterize and scale it to fit a whole page/slide and nothing is
|
||||
ever cut; columns with many numerics simply flow across pages as small
|
||||
multiples.
|
||||
@@ -34,7 +35,7 @@ try:
|
||||
except Exception: # noqa: BLE001 — keep the chapter importable no matter what.
|
||||
build_boxplot_stats = None # type: ignore[assignment]
|
||||
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_VERSION = "1.2.0"
|
||||
CHAPTER_ID = "num_distr"
|
||||
CHAPTER_TITLE = "Distribuciones numéricas"
|
||||
|
||||
@@ -140,9 +141,11 @@ def _make_hist_box(name: str, numeric: dict, box: dict):
|
||||
std = numeric.get("std")
|
||||
|
||||
# ±1σ band first (behind the lines), then median (solid) and mean (dashed).
|
||||
# The band's legend entry also reports the numeric value of the standard
|
||||
# deviation, so the reader sees mean, median AND σ at a glance.
|
||||
if mean is not None and std is not None and std > 0:
|
||||
ax_h.axvspan(mean - std, mean + std, color="#f0c27b", alpha=0.22,
|
||||
zorder=1, label="±1σ")
|
||||
zorder=1, label=f"±1σ (σ = {_fmt_num(std)})")
|
||||
if median is not None:
|
||||
ax_h.axvline(median, color="#2e8b57", linestyle="-", linewidth=1.6,
|
||||
zorder=4, label=f"mediana = {_fmt_num(median)}")
|
||||
@@ -152,7 +155,19 @@ def _make_hist_box(name: str, numeric: dict, box: dict):
|
||||
|
||||
ax_h.set_ylabel("frecuencia", fontsize=8)
|
||||
ax_h.tick_params(labelsize=7)
|
||||
ax_h.legend(fontsize=6.5, loc="upper right", framealpha=0.85)
|
||||
# Always surface σ in the legend: if the ±1σ band could not be drawn (no mean
|
||||
# or std<=0) but σ is still known, add a label-only proxy handle so the value
|
||||
# of the standard deviation is reported regardless of the band.
|
||||
handles, labels = ax_h.get_legend_handles_labels()
|
||||
if std is not None and not any("σ =" in lbl for lbl in labels):
|
||||
from matplotlib.lines import Line2D
|
||||
proxy = Line2D([], [], linestyle="none", marker="",
|
||||
label=f"σ = {_fmt_num(std)}")
|
||||
handles.append(proxy)
|
||||
labels.append(f"σ = {_fmt_num(std)}")
|
||||
if handles:
|
||||
ax_h.legend(handles, labels, fontsize=6.5, loc="upper right",
|
||||
framealpha=0.85)
|
||||
for spine in ("top", "right"):
|
||||
ax_h.spines[spine].set_visible(False)
|
||||
|
||||
|
||||
@@ -159,6 +159,50 @@ def test_anti_corte_muchas_columnas_pdf_y_pptx():
|
||||
assert res_pptx["n_slides"] >= 8 # at least one slide per column figure.
|
||||
|
||||
|
||||
def _hist_legend_texts(numeric, box=None):
|
||||
"""Build the per-column figure and return its histogram-legend label texts."""
|
||||
from datascience.automatic_eda.chapters.num_distr import _make_hist_box
|
||||
import matplotlib.pyplot as plt
|
||||
fig = _make_hist_box("col", numeric, box or {})
|
||||
ax_h = fig.axes[0] # the histogram is the top axis.
|
||||
leg = ax_h.get_legend()
|
||||
texts = [t.get_text() for t in leg.get_texts()] if leg else []
|
||||
plt.close(fig)
|
||||
return texts
|
||||
|
||||
|
||||
def test_golden_leyenda_histograma_reporta_valor_std():
|
||||
# The histogram legend must report the numeric value of the standard
|
||||
# deviation σ next to mean and median.
|
||||
numeric = _numeric_block(42.5, 40.0, 12.3, 1.0, 100.0, "right-skewed", 5)
|
||||
texts = _hist_legend_texts(numeric)
|
||||
joined = " ".join(texts)
|
||||
assert any("σ =" in t for t in texts), f"σ value missing in legend: {texts}"
|
||||
assert "12.3" in joined, f"std value 12.3 not in legend: {texts}"
|
||||
assert any("media =" in t for t in texts)
|
||||
assert any("mediana =" in t for t in texts)
|
||||
|
||||
|
||||
def test_edge_std_en_leyenda_aunque_no_haya_banda():
|
||||
# When the ±1σ band cannot be drawn (no mean) but σ is known, the legend
|
||||
# still surfaces the σ value via a label-only proxy handle.
|
||||
numeric = _numeric_block(42.5, 40.0, 7.5, 1.0, 100.0, "right-skewed", 0)
|
||||
numeric["mean"] = None # forces the band off; σ must still appear.
|
||||
texts = _hist_legend_texts(numeric)
|
||||
assert any("σ = 7.5" in t for t in texts), f"σ proxy missing: {texts}"
|
||||
|
||||
|
||||
def test_edge_sin_std_no_revienta_la_figura():
|
||||
# A numeric block without σ must not raise and simply omits the σ entry.
|
||||
import matplotlib.pyplot as plt
|
||||
numeric = _numeric_block(42.5, 40.0, 0.0, 1.0, 100.0, "discrete", 0)
|
||||
numeric["std"] = None
|
||||
texts = _hist_legend_texts(numeric)
|
||||
assert not any("σ =" in t for t in texts)
|
||||
# mean/median lines still produce their own legend entries.
|
||||
assert any("media =" in t for t in texts)
|
||||
|
||||
|
||||
def test_distribution_gloss_cubre_todas_las_etiquetas():
|
||||
# Every label detect_distribution_type can emit has a Spanish gloss.
|
||||
for label in ("normal-ish", "right-skewed", "left-skewed", "heavy-tail",
|
||||
|
||||
@@ -20,7 +20,7 @@ from __future__ import annotations
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_ID = "overview"
|
||||
CHAPTER_TITLE = "Overview"
|
||||
|
||||
@@ -90,8 +90,14 @@ def _head_block(profile: dict, ctx: dict):
|
||||
if not cols:
|
||||
cols = list(head[0].keys())
|
||||
rows = [[model._safe_str(r.get(c)) for c in cols] for r in head[:10]]
|
||||
return model.DataTable(header=cols, rows=rows,
|
||||
note=f"primeras {len(rows)} filas")
|
||||
# Honest note: how many rows are shown and, when known, out of how many
|
||||
# rows the dataset has (so "primeras 10 filas de 891" gives context).
|
||||
note = f"primeras {len(rows)} filas"
|
||||
n_rows = profile.get("n_rows")
|
||||
if isinstance(n_rows, int) and not isinstance(n_rows, bool) \
|
||||
and n_rows > len(rows):
|
||||
note += f" de {n_rows:,}".replace(",", ".")
|
||||
return model.DataTable(header=cols, rows=rows, note=note)
|
||||
return model.Note(
|
||||
"df.head no disponible: el TableProfile no incluye 'head_rows'. La fase "
|
||||
"de cálculo debe añadir profile['head_rows'] (lista de dicts fila) o "
|
||||
|
||||
@@ -0,0 +1,187 @@
|
||||
"""Tests for the OVERVIEW chapter — DoD: golden + edges + degradation.
|
||||
|
||||
Self-contained: builds synthetic TableProfiles (no DuckDB) so the suite is fast
|
||||
and deterministic. Verifies that ``build_overview`` renders the raw first rows
|
||||
(``df.head``) as a DataTable when ``head_rows`` is present — both when it arrives
|
||||
via ``profile['head_rows']`` (populated by ``profile_table``) and via
|
||||
``ctx['head_rows']`` (populated by ``build_eda_render_ctx``) — that the chapter
|
||||
also renders the column dictionary and the numeric describe, that the full
|
||||
document renders to PDF and PPTX showing the head values, and that a profile with
|
||||
NO head data degrades to an honest note instead of raising or inventing rows.
|
||||
"""
|
||||
|
||||
import os
|
||||
import re
|
||||
import tempfile
|
||||
|
||||
from pypdf import PdfReader
|
||||
from pptx import Presentation
|
||||
|
||||
from datascience.automatic_eda.model import DataTable, Note
|
||||
from datascience.automatic_eda.chapters.overview import (
|
||||
CHAPTER_ID, CHAPTER_VERSION, build_overview,
|
||||
)
|
||||
from datascience.render_automatic_eda_pdf import render_automatic_eda_pdf
|
||||
from datascience.render_automatic_eda_pptx import render_automatic_eda_pptx
|
||||
|
||||
|
||||
def _columns() -> list:
|
||||
return [
|
||||
{"name": "PassengerId", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"null_count": 0, "numeric": {"mean": 2.0, "median": 2.0, "min": 1.0,
|
||||
"max": 3.0, "std": 1.0}},
|
||||
{"name": "Survived", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"null_count": 0, "numeric": {"mean": 0.33, "median": 0.0, "min": 0.0,
|
||||
"max": 1.0, "std": 0.58}},
|
||||
{"name": "Pclass", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"null_count": 0, "numeric": {"mean": 2.33, "median": 3.0, "min": 1.0,
|
||||
"max": 3.0, "std": 1.15}},
|
||||
{"name": "Name", "inferred_type": "categorical", "null_pct": 0.0,
|
||||
"null_count": 0, "distinct_count": 3},
|
||||
{"name": "Sex", "inferred_type": "categorical", "null_pct": 0.0,
|
||||
"null_count": 0, "distinct_count": 2,
|
||||
"categorical": {"top": [{"value": "male", "count": 2},
|
||||
{"value": "female", "count": 1}]}},
|
||||
]
|
||||
|
||||
|
||||
def _head_rows() -> list:
|
||||
return [
|
||||
{"PassengerId": 1, "Survived": 0, "Pclass": 3,
|
||||
"Name": "Braund Owen", "Sex": "male"},
|
||||
{"PassengerId": 2, "Survived": 1, "Pclass": 1,
|
||||
"Name": "Cumings Florence", "Sex": "female"},
|
||||
{"PassengerId": 3, "Survived": 1, "Pclass": 3,
|
||||
"Name": "Heikkinen Laina", "Sex": "female"},
|
||||
]
|
||||
|
||||
|
||||
def _profile(with_head: bool = True) -> dict:
|
||||
prof = {
|
||||
"table": "titanic",
|
||||
"source": "/data/titanic.csv",
|
||||
"profiled_at": "2026-06-30T10:00:00+00:00",
|
||||
"n_rows": 891,
|
||||
"n_cols": 5,
|
||||
"quality_score": 88.0,
|
||||
"columns": _columns(),
|
||||
}
|
||||
if with_head:
|
||||
prof["head_rows"] = _head_rows()
|
||||
return prof
|
||||
|
||||
|
||||
def _pdf_text(path: str) -> str:
|
||||
txt = "".join((pg.extract_text() or "") for pg in PdfReader(path).pages)
|
||||
return re.sub(r"\s+", " ", txt)
|
||||
|
||||
|
||||
def _pptx_text(path: str) -> str:
|
||||
prs = Presentation(path)
|
||||
parts = []
|
||||
for sl in prs.slides:
|
||||
for sh in sl.shapes:
|
||||
if sh.has_text_frame:
|
||||
parts.append(sh.text_frame.text)
|
||||
if sh.has_table:
|
||||
tb = sh.table
|
||||
for r in range(len(tb.rows)):
|
||||
for c in range(len(tb.columns)):
|
||||
parts.append(tb.cell(r, c).text)
|
||||
return re.sub(r"\s+", " ", " ".join(parts))
|
||||
|
||||
|
||||
def _flatten(blocks):
|
||||
"""Recursively flatten Group blocks into a flat list (none here today)."""
|
||||
out = []
|
||||
for b in blocks:
|
||||
inner = getattr(b, "blocks", None)
|
||||
if inner is not None and getattr(b, "kind", None) == "group":
|
||||
out.extend(_flatten(inner))
|
||||
else:
|
||||
out.append(b)
|
||||
return out
|
||||
|
||||
|
||||
def test_golden_build_overview_muestra_head_desde_profile():
|
||||
ch = build_overview(_profile(), {})
|
||||
assert ch is not None
|
||||
assert ch.id == CHAPTER_ID
|
||||
assert ch.version == CHAPTER_VERSION
|
||||
blocks = _flatten(ch.blocks)
|
||||
# The first DataTable is df.head: its header is the column names and the
|
||||
# real first rows are present (not a placeholder note).
|
||||
tables = [b for b in blocks if isinstance(b, DataTable)]
|
||||
assert tables, "overview must emit at least the df.head DataTable"
|
||||
head_tbl = tables[0]
|
||||
assert head_tbl.header == ["PassengerId", "Survived", "Pclass",
|
||||
"Name", "Sex"]
|
||||
assert len(head_tbl.rows) == 3
|
||||
flat = [str(c) for row in head_tbl.rows for c in row]
|
||||
assert "Braund Owen" in flat and "Cumings Florence" in flat
|
||||
# Honest note carries how many rows shown out of the dataset total.
|
||||
assert head_tbl.note is not None
|
||||
assert "primeras 3 filas" in head_tbl.note and "891" in head_tbl.note
|
||||
# No "df.head no disponible" placeholder when head_rows is present.
|
||||
assert not any(isinstance(b, Note) and "no disponible" in b.text
|
||||
for b in blocks)
|
||||
|
||||
|
||||
def test_golden_head_desde_ctx_tambien_funciona():
|
||||
# head_rows absent in profile but present in ctx (build_eda_render_ctx path).
|
||||
prof = _profile(with_head=False)
|
||||
ch = build_overview(prof, {"head_rows": _head_rows()})
|
||||
assert ch is not None
|
||||
tables = [b for b in _flatten(ch.blocks) if isinstance(b, DataTable)]
|
||||
flat = [str(c) for row in tables[0].rows for c in row]
|
||||
assert "Braund Owen" in flat
|
||||
|
||||
|
||||
def test_golden_render_pdf_muestra_head():
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pdf")
|
||||
res = render_automatic_eda_pdf(_profile(), out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
txt = _pdf_text(out)
|
||||
assert "Braund" in txt and "male" in txt
|
||||
assert "primeras" in txt # head note rendered.
|
||||
assert "df.head" in txt # chapter heading rendered.
|
||||
assert "no disponible" not in txt # placeholder NOT shown.
|
||||
|
||||
|
||||
def test_golden_render_pptx_muestra_head():
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pptx")
|
||||
res = render_automatic_eda_pptx(_profile(), out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
txt = _pptx_text(out)
|
||||
assert "Braund" in txt and "Cumings" in txt
|
||||
|
||||
|
||||
def test_edge_sin_head_rows_degrada_a_nota_honesta():
|
||||
# No head data anywhere: chapter still builds (columns exist), shows the
|
||||
# honest placeholder note, and never invents rows nor raises.
|
||||
prof = _profile(with_head=False)
|
||||
ch = build_overview(prof, {})
|
||||
assert ch is not None
|
||||
blocks = _flatten(ch.blocks)
|
||||
assert any(isinstance(b, Note) and "no disponible" in b.text
|
||||
for b in blocks)
|
||||
# The first DataTable now is the column dictionary, not df.head rows.
|
||||
tables = [b for b in blocks if isinstance(b, DataTable)]
|
||||
assert all("Braund" not in str(c)
|
||||
for tbl in tables for row in tbl.rows for c in row)
|
||||
|
||||
|
||||
def test_edge_none_y_vacio_no_rompen():
|
||||
# Nothing to render at all -> None, no raise.
|
||||
assert build_overview(None, None) is None
|
||||
assert build_overview({}, {}) is None
|
||||
assert build_overview({"columns": []}, {}) is None
|
||||
# Only head_rows (no columns) still yields a chapter with the head table.
|
||||
ch = build_overview({"columns": []}, {"head_rows": _head_rows()})
|
||||
assert ch is not None
|
||||
tables = [b for b in _flatten(ch.blocks) if isinstance(b, DataTable)]
|
||||
assert tables and len(tables[0].rows) == 3
|
||||
@@ -2,8 +2,17 @@
|
||||
|
||||
Builds the document cover from a TableProfile plus an optional ``ctx`` of
|
||||
presentation metadata. Reads everything defensively (``.get``) and degrades
|
||||
honestly: a field that is neither in the profile nor in ``ctx`` is shown as a
|
||||
placeholder rather than invented, leaving a hook for the LLM layer to fill it.
|
||||
honestly.
|
||||
|
||||
The dataset size (N rows x M columns) is always shown big, as a heading right
|
||||
under the dataset name (kept together in a ``Group``), not buried in the
|
||||
metadata table. The Description and Granularity are resolved through a cascade
|
||||
so they are never empty: an explicit ``ctx`` value wins; otherwise the LLM block
|
||||
(``profile['llm']`` from ``eda_llm_insights``) provides ``summary`` /
|
||||
``row_meaning``; otherwise a short summary is derived from the profile itself
|
||||
(shape, column-type mix, quality score) and a "Cada fila es…" sentence from the
|
||||
key-candidate columns or the table shape. Nothing is invented: the derived
|
||||
fallbacks state that they come from the profile.
|
||||
|
||||
Contract for chapter authors (see ``docs/capabilities/automatic_eda.md``):
|
||||
build_<id>(profile: dict, ctx: dict) -> Chapter | None
|
||||
@@ -17,10 +26,15 @@ from datetime import datetime, timezone
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.1.0"
|
||||
CHAPTER_VERSION = "1.2.0"
|
||||
CHAPTER_ID = "portada"
|
||||
CHAPTER_TITLE = "Portada"
|
||||
|
||||
# Key under which eda_llm_insights stores its interpretive block in the profile.
|
||||
# The cover reads ``summary`` (what the table is) and ``row_meaning`` (what one
|
||||
# row represents) from it when the LLM layer ran (``run_llm``).
|
||||
_LLM_KEY = "llm"
|
||||
|
||||
# Default human description of what the table quality score measures. Chapters
|
||||
# can override it via ctx["quality_criteria"].
|
||||
_DEFAULT_QUALITY_CRITERIA = (
|
||||
@@ -142,6 +156,88 @@ def _fmt_date_eu(value) -> str:
|
||||
return s
|
||||
|
||||
|
||||
def _llm_block(profile: dict, ctx: dict) -> dict:
|
||||
"""Return the interpretive LLM block (``eda_llm_insights`` output), or {}.
|
||||
|
||||
It is stored under ``profile['llm']`` by ``profile_table(run_llm=True)`` and
|
||||
may also be forwarded in ``ctx['llm']``. Read defensively: anything that is
|
||||
not a dict degrades to an empty dict so the cover never raises.
|
||||
"""
|
||||
block = profile.get(_LLM_KEY)
|
||||
if not isinstance(block, dict):
|
||||
block = ctx.get(_LLM_KEY)
|
||||
return block if isinstance(block, dict) else {}
|
||||
|
||||
|
||||
def _count_column_types(profile: dict, ctx: dict):
|
||||
"""Best-effort (n_numeric, n_categorical) for the dataset.
|
||||
|
||||
Prefers the aggregated ``ctx['document_summary']`` (computed by the engine
|
||||
over the whole body); falls back to counting the profile columns directly so
|
||||
the cover still has the numbers when no summary was passed.
|
||||
"""
|
||||
summary = ctx.get("document_summary")
|
||||
if isinstance(summary, dict):
|
||||
n_num = summary.get("n_numeric")
|
||||
n_cat = summary.get("n_categorical")
|
||||
if n_num is not None or n_cat is not None:
|
||||
return n_num, n_cat
|
||||
cols = profile.get("columns") or []
|
||||
n_num = sum(1 for c in cols if isinstance(c, dict)
|
||||
and c.get("inferred_type") == "numeric")
|
||||
n_cat = sum(1 for c in cols if isinstance(c, dict)
|
||||
and isinstance(c.get("categorical"), dict)
|
||||
and c.get("categorical", {}).get("top")
|
||||
and c.get("inferred_type") != "numeric")
|
||||
return n_num, n_cat
|
||||
|
||||
|
||||
def _derive_description(profile: dict, ctx: dict) -> str:
|
||||
"""A short, honest description of the dataset from the profile.
|
||||
|
||||
Used only when no explicit ``ctx['description']`` and no LLM ``summary`` are
|
||||
available. Summarizes shape, column-type mix and quality score; never empty,
|
||||
never invents business meaning (it states the description was derived)."""
|
||||
n_rows = profile.get("n_rows")
|
||||
n_cols = profile.get("n_cols")
|
||||
n_num, n_cat = _count_column_types(profile, ctx)
|
||||
head = f"Conjunto de datos con {_fmt_int(n_rows)} filas y {_fmt_int(n_cols)} columnas"
|
||||
type_bits = []
|
||||
if n_num:
|
||||
type_bits.append(f"{_fmt_int(n_num)} numéricas")
|
||||
if n_cat:
|
||||
type_bits.append(f"{_fmt_int(n_cat)} categóricas")
|
||||
if type_bits:
|
||||
head += " (" + ", ".join(type_bits) + ")"
|
||||
parts = [head + "."]
|
||||
score = profile.get("quality_score")
|
||||
if score is not None:
|
||||
parts.append(f"Calidad media estimada: {score}/100.")
|
||||
parts.append(
|
||||
"Resumen derivado del perfil; active la interpretación LLM (`run_llm`) "
|
||||
"para una descripción de negocio más rica.")
|
||||
return " ".join(parts)
|
||||
|
||||
|
||||
def _derive_granularity(profile: dict, dataset_name: str) -> str:
|
||||
"""A ``Cada fila es…`` granularity sentence from the profile.
|
||||
|
||||
Prefers the key-candidate columns (a row is identified by them); when no key
|
||||
is detected, falls back to the table shape so the line is always meaningful
|
||||
and starts with ``Cada fila es`` as the user requested."""
|
||||
keys = profile.get("key_candidates") or []
|
||||
if keys:
|
||||
shown = ", ".join(str(k) for k in keys[:3])
|
||||
more = "" if len(keys) <= 3 else f" (y {len(keys) - 3} más)"
|
||||
return (f"Cada fila es un registro identificado por {shown}{more}, "
|
||||
"candidata(s) a clave por ser únicas y sin nulos.")
|
||||
n_rows = profile.get("n_rows")
|
||||
tail = f" El dataset tiene {_fmt_int(n_rows)} filas en total." if n_rows else ""
|
||||
return (f"Cada fila es un registro de «{dataset_name}». No se detectó una "
|
||||
"columna identificadora única, así que la granularidad se infiere "
|
||||
"de la forma de la tabla." + tail)
|
||||
|
||||
|
||||
def build_portada(profile: dict, ctx: dict):
|
||||
"""Build the cover Chapter, or None if there is truly nothing to show."""
|
||||
profile = profile or {}
|
||||
@@ -166,30 +262,38 @@ def build_portada(profile: dict, ctx: dict):
|
||||
quality_criteria = ctx.get("quality_criteria") or _DEFAULT_QUALITY_CRITERIA
|
||||
quality_value = "—" if score is None else f"{score} / 100"
|
||||
|
||||
# Granularity: ctx wins; else derive from key candidates; else be honest.
|
||||
llm = _llm_block(profile, ctx)
|
||||
|
||||
# Granularity: explicit ctx wins; then the LLM "row_meaning"; then the key
|
||||
# candidates; finally a shape-based fallback. Always a real "Cada fila es…".
|
||||
granularity = ctx.get("granularity")
|
||||
if not granularity:
|
||||
keys = profile.get("key_candidates") or []
|
||||
if keys:
|
||||
granularity = ("Cada fila parece identificada por "
|
||||
+ ", ".join(str(k) for k in keys[:3]) + ".")
|
||||
else:
|
||||
granularity = ("Cada fila es… (granularidad no determinada — "
|
||||
"pendiente de la capa de cálculo/LLM).")
|
||||
granularity = (llm.get("row_meaning") or "").strip() or None
|
||||
if not granularity:
|
||||
granularity = _derive_granularity(profile, str(dataset_name))
|
||||
|
||||
# Description: explicit ctx wins; then the LLM "summary"; finally a short
|
||||
# profile-derived summary. Never the old empty placeholder.
|
||||
description = ctx.get("description")
|
||||
if not description:
|
||||
description = ("Descripción no provista — pendiente de la capa LLM "
|
||||
"(`run_llm`) o de `ctx['description']`.")
|
||||
description = (llm.get("summary") or "").strip() or None
|
||||
if not description:
|
||||
description = _derive_description(profile, ctx)
|
||||
|
||||
blocks = [
|
||||
# Title + dataset size shown together and BIG (Heading) at the top, kept on
|
||||
# the same page (Group). The size is no longer buried in the metadata table.
|
||||
cover = [
|
||||
model.Heading(text=str(dataset_name), level=1),
|
||||
model.Markdown(text="**Automatic-EDA** · informe exploratorio automático"),
|
||||
model.Heading(text=shape, level=2),
|
||||
]
|
||||
|
||||
blocks = [
|
||||
model.Group(blocks=cover),
|
||||
model.KVTable(rows=[
|
||||
("Fuente", source_origin),
|
||||
("Almacenamiento", storage),
|
||||
("Generado", when),
|
||||
("Tamaño", shape),
|
||||
("Calidad", quality_value),
|
||||
("Criterios de calidad", quality_criteria),
|
||||
]),
|
||||
|
||||
@@ -0,0 +1,197 @@
|
||||
"""Tests for the PORTADA (cover) chapter — DoD: golden + edges + render.
|
||||
|
||||
Self-contained: builds synthetic TableProfiles (no DuckDB) so the suite is fast
|
||||
and deterministic. Verifies the Fase 4b improvements:
|
||||
|
||||
1. The dataset size (N rows x M columns) is always shown BIG — as a level-2
|
||||
heading kept together with the dataset name in a ``Group`` — and is no longer
|
||||
a row of the metadata table.
|
||||
2. Description and Granularity are resolved through a real cascade and are never
|
||||
the old empty placeholders: an explicit ``ctx`` value wins; otherwise the LLM
|
||||
block (``profile['llm']``) provides ``summary`` / ``row_meaning``; otherwise a
|
||||
short summary is derived from the profile and a "Cada fila es…" sentence from
|
||||
the key-candidate columns or the table shape.
|
||||
3. The chapter degrades without raising on empty/None input.
|
||||
4. It renders inside the full document to both PDF and PPTX showing that content.
|
||||
"""
|
||||
|
||||
import os
|
||||
import re
|
||||
import tempfile
|
||||
|
||||
from pypdf import PdfReader
|
||||
from pptx import Presentation
|
||||
|
||||
from datascience.automatic_eda.model import Group, Heading, KVTable, Markdown
|
||||
from datascience.automatic_eda.chapters.portada import (
|
||||
CHAPTER_ID, CHAPTER_VERSION, build_portada,
|
||||
)
|
||||
from datascience.render_automatic_eda_pdf import render_automatic_eda_pdf
|
||||
from datascience.render_automatic_eda_pptx import render_automatic_eda_pptx
|
||||
|
||||
|
||||
def _profile(with_llm: bool = True, with_keys: bool = True) -> dict:
|
||||
prof = {
|
||||
"table": "titanic",
|
||||
"source": "/data/titanic.csv",
|
||||
"profiled_at": "2026-06-30T10:00:00+00:00",
|
||||
"n_rows": 891,
|
||||
"n_cols": 12,
|
||||
"quality_score": 78.0,
|
||||
"columns": [
|
||||
{"name": "PassengerId", "inferred_type": "numeric",
|
||||
"null_pct": 0.0, "numeric": {"mean": 446.0, "min": 1.0,
|
||||
"max": 891.0, "std": 257.0}},
|
||||
{"name": "Survived", "inferred_type": "numeric",
|
||||
"null_pct": 0.0, "numeric": {"mean": 0.38, "min": 0.0,
|
||||
"max": 1.0, "std": 0.49}},
|
||||
{"name": "Sex", "inferred_type": "categorical", "null_pct": 0.0,
|
||||
"categorical": {"top": [{"value": "male", "count": 577, "pct": 0.65},
|
||||
{"value": "female", "count": 314,
|
||||
"pct": 0.35}],
|
||||
"mode": "male", "n_distinct": 2, "entropy": 0.93}},
|
||||
],
|
||||
}
|
||||
if with_keys:
|
||||
prof["key_candidates"] = ["PassengerId"]
|
||||
if with_llm:
|
||||
prof["llm"] = {
|
||||
"summary": "Pasajeros del Titanic con su supervivencia y datos de viaje.",
|
||||
"row_meaning": "Cada fila es un pasajero del Titanic.",
|
||||
"dictionary": [], "pii": [], "cleaning": [], "analyses": [],
|
||||
}
|
||||
return prof
|
||||
|
||||
|
||||
def _pdf_text(path: str) -> str:
|
||||
txt = "".join((pg.extract_text() or "") for pg in PdfReader(path).pages)
|
||||
return re.sub(r"\s+", " ", txt)
|
||||
|
||||
|
||||
def _pptx_text(path: str) -> str:
|
||||
prs = Presentation(path)
|
||||
parts = []
|
||||
for sl in prs.slides:
|
||||
for sh in sl.shapes:
|
||||
if sh.has_text_frame:
|
||||
parts.append(sh.text_frame.text)
|
||||
if sh.has_table:
|
||||
tb = sh.table
|
||||
for r in range(len(tb.rows)):
|
||||
for c in range(len(tb.columns)):
|
||||
parts.append(tb.cell(r, c).text)
|
||||
return re.sub(r"\s+", " ", " ".join(parts))
|
||||
|
||||
|
||||
def _markdown_after(blocks, heading_text):
|
||||
"""Return the Markdown block that follows a Heading whose text matches."""
|
||||
for i, b in enumerate(blocks):
|
||||
if isinstance(b, Heading) and heading_text.lower() in b.text.lower():
|
||||
for nb in blocks[i + 1:]:
|
||||
if isinstance(nb, Markdown):
|
||||
return nb
|
||||
return None
|
||||
|
||||
|
||||
def test_golden_tamano_grande_y_textos_llm():
|
||||
ch = build_portada(_profile(), {})
|
||||
assert ch is not None
|
||||
assert ch.id == CHAPTER_ID
|
||||
assert ch.version == CHAPTER_VERSION
|
||||
|
||||
# 1) Title + size kept together in a Group; size is a BIG level-2 heading.
|
||||
group = next(b for b in ch.blocks if isinstance(b, Group))
|
||||
inner = group.blocks
|
||||
assert isinstance(inner[0], Heading) and inner[0].level == 1
|
||||
assert inner[0].text == "titanic"
|
||||
size_h = next(b for b in inner if isinstance(b, Heading) and b.level == 2)
|
||||
assert "891" in size_h.text and "12" in size_h.text
|
||||
assert "filas" in size_h.text and "columnas" in size_h.text
|
||||
|
||||
# 2) Size is no longer a row of the metadata table.
|
||||
kv = next(b for b in ch.blocks if isinstance(b, KVTable))
|
||||
labels = [r[0] for r in kv.rows]
|
||||
assert "Tamaño" not in labels
|
||||
assert "Fuente" in labels and "Calidad" in labels
|
||||
|
||||
# 3) Description and Granularity come from the LLM block.
|
||||
desc = _markdown_after(ch.blocks, "Descripción")
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
assert desc is not None and "Titanic" in desc.text
|
||||
assert gran is not None and gran.text.startswith("Cada fila es")
|
||||
assert "pasajero" in gran.text.lower()
|
||||
|
||||
|
||||
def test_fallback_sin_llm_usa_keys_y_perfil():
|
||||
# No LLM block: description derived from the profile, granularity from keys.
|
||||
ch = build_portada(_profile(with_llm=False, with_keys=True), {})
|
||||
desc = _markdown_after(ch.blocks, "Descripción")
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
# Description is the derived summary, never the old "pendiente" placeholder.
|
||||
assert "pendiente" not in desc.text.lower()
|
||||
assert "891" in desc.text and "columnas" in desc.text
|
||||
assert "numéricas" in desc.text or "categóricas" in desc.text
|
||||
# Granularity mentions the key candidate and starts with "Cada fila es".
|
||||
assert gran.text.startswith("Cada fila es")
|
||||
assert "PassengerId" in gran.text
|
||||
assert "…" not in gran.text # the old ellipsis placeholder is gone.
|
||||
|
||||
|
||||
def test_fallback_sin_llm_sin_keys_usa_forma():
|
||||
ch = build_portada(_profile(with_llm=False, with_keys=False), {})
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
assert gran.text.startswith("Cada fila es")
|
||||
assert "titanic" in gran.text.lower()
|
||||
assert "pendiente" not in gran.text.lower()
|
||||
|
||||
|
||||
def test_ctx_explicito_gana_sobre_llm():
|
||||
ctx = {"description": "Descripción manual.",
|
||||
"granularity": "Cada fila es una unidad manual."}
|
||||
ch = build_portada(_profile(), ctx)
|
||||
desc = _markdown_after(ch.blocks, "Descripción")
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
assert desc.text == "Descripción manual."
|
||||
assert gran.text == "Cada fila es una unidad manual."
|
||||
|
||||
|
||||
def test_edge_perfil_vacio_no_lanza():
|
||||
# Empty / None never raise; the cover still shows a size and real texts.
|
||||
for prof, ctx in (({}, {}), (None, None)):
|
||||
ch = build_portada(prof, ctx)
|
||||
assert ch is not None
|
||||
group = next(b for b in ch.blocks if isinstance(b, Group))
|
||||
size_h = next(b for b in group.blocks
|
||||
if isinstance(b, Heading) and b.level == 2)
|
||||
assert "filas" in size_h.text and "columnas" in size_h.text
|
||||
desc = _markdown_after(ch.blocks, "Descripción")
|
||||
gran = _markdown_after(ch.blocks, "Granularidad")
|
||||
assert desc.text and "pendiente" not in desc.text.lower()
|
||||
assert gran.text.startswith("Cada fila es")
|
||||
|
||||
|
||||
def test_golden_render_pdf_muestra_portada():
|
||||
prof = _profile()
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pdf")
|
||||
res = render_automatic_eda_pdf(prof, out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
txt = _pdf_text(out)
|
||||
assert "titanic" in txt.lower()
|
||||
assert "891" in txt and "filas" in txt and "columnas" in txt
|
||||
assert "Titanic" in txt # LLM summary in the Description.
|
||||
assert "Cada fila es" in txt # granularity sentence.
|
||||
|
||||
|
||||
def test_golden_render_pptx_muestra_portada():
|
||||
prof = _profile()
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "eda.pptx")
|
||||
res = render_automatic_eda_pptx(prof, out, {"title": "EDA"})
|
||||
assert res["path"] == out and os.path.exists(out)
|
||||
assert CHAPTER_ID in [c["id"] for c in res["chapters"]]
|
||||
txt = _pptx_text(out)
|
||||
assert "titanic" in txt.lower()
|
||||
assert "891" in txt and "columnas" in txt
|
||||
assert "Cada fila es" in txt
|
||||
@@ -256,14 +256,14 @@ def _pk_candidates_section(profile: dict, mark: bool) -> list:
|
||||
pk = ("[[term:pk]]**clave primaria**[[/term]]" if mark
|
||||
else "**clave primaria**")
|
||||
intro = (
|
||||
f"Estas columnas son **candidatas a {pk}**: su "
|
||||
"[[term:cardinalidad]]cardinalidad[[/term]] iguala al número de filas y no "
|
||||
"tienen nulos, así que cada valor identifica una fila distinta. Son "
|
||||
"candidatas, no una clave declarada: la base no las marca como tal."
|
||||
f"Columnas **candidatas a {pk}**: su "
|
||||
"[[term:cardinalidad]]cardinalidad[[/term]] iguala al número de filas y "
|
||||
"no tienen nulos. Son candidatas, no una clave declarada: la base no "
|
||||
"las marca como tal."
|
||||
if mark else
|
||||
"Estas columnas son **candidatas a clave primaria**: su cardinalidad "
|
||||
"iguala al número de filas y no tienen nulos, así que cada valor "
|
||||
"identifica una fila distinta.")
|
||||
"Columnas **candidatas a clave primaria**: su cardinalidad iguala al "
|
||||
"número de filas y no tienen nulos. Son candidatas, no una clave "
|
||||
"declarada.")
|
||||
|
||||
rows = []
|
||||
for name in keys:
|
||||
@@ -320,10 +320,10 @@ def _inter_table_section(db_path: str, tables: list, mark: bool) -> list:
|
||||
blocks = [
|
||||
model.Heading(text="Claves foráneas candidatas (inter-tabla)", level=2),
|
||||
model.Markdown(text=(
|
||||
f"La fuente tiene varias tablas. Estas {fk_term} candidatas se infieren "
|
||||
f"por señal de nombre y por {containment}: una columna de una tabla cuyos "
|
||||
"valores están contenidos en la clave de otra. No están declaradas por "
|
||||
"la base; son la relación más probable según los datos.")),
|
||||
f"La fuente tiene varias tablas. Estas {fk_term} candidatas se "
|
||||
f"infieren por señal de nombre y por {containment}. No están "
|
||||
"declaradas por la base; son la relación más probable según los "
|
||||
"datos.")),
|
||||
]
|
||||
|
||||
shown = candidates[:MAX_FK_ROWS]
|
||||
@@ -441,13 +441,12 @@ def _intro_blocks(mark: bool) -> list:
|
||||
pk = "[[term:pk]]clave primaria[[/term]]" if mark else "clave primaria"
|
||||
fk = "[[term:fk]]clave foránea[[/term]]" if mark else "clave foránea"
|
||||
text = (
|
||||
f"Este capítulo analiza las **relaciones de clave** de la tabla: qué columna "
|
||||
f"identifica cada fila (la {pk}) y qué columnas referencian a otra tabla (las "
|
||||
f"{fk}). Cuando la base las **declara** como restricciones del esquema, se "
|
||||
"muestran tal cual; cuando no, se proponen las más probables a partir de los "
|
||||
"datos —por inclusión de valores entre tablas (containment) o, en una sola "
|
||||
"tabla, por una heurística de nombre y cardinalidad— siempre marcadas como "
|
||||
"candidatas, nunca como hechos.")
|
||||
f"Este capítulo analiza las **relaciones de clave** de la tabla: cuál es "
|
||||
f"la {pk} y cuáles son las {fk}. Cuando la base las **declara** como "
|
||||
"restricciones del esquema, se muestran tal cual; cuando no, se proponen "
|
||||
"las más probables a partir de los datos —por containment entre tablas o, "
|
||||
"en una sola tabla, por una heurística de nombre y cardinalidad— siempre "
|
||||
"marcadas como candidatas, nunca como hechos.")
|
||||
return [model.Heading(text=CHAPTER_TITLE, level=1), model.Markdown(text=text)]
|
||||
|
||||
|
||||
|
||||
@@ -0,0 +1,559 @@
|
||||
"""Free-text / NLP distributions chapter (TEXT DISTR) for AutomaticEDA.
|
||||
|
||||
First chapter for **non-tabular** content: it profiles the linguistic content of
|
||||
any column holding long free text (reviews, descriptions, comments, tickets) that
|
||||
the categorical chapter cannot meaningfully summarize (high cardinality, many
|
||||
words per value). It is the cheap, model-free counterpart to ``cat_distr`` for
|
||||
columns that are prose rather than discrete labels.
|
||||
|
||||
Activation (returns ``None`` when it does not apply):
|
||||
|
||||
1. Cheap gate from the aggregated profile: at least one non-numeric column whose
|
||||
``categorical.len_mean`` (mean character length) is ``>= _MIN_LEN_CHARS``.
|
||||
A dataset whose only string columns are short labels (e.g. titanic's
|
||||
``Name``, ~27 chars) never passes this gate, so the chapter disappears with
|
||||
zero extra work and the existing report is untouched.
|
||||
2. Confirmation from a raw sample: each candidate column is sampled (push-down
|
||||
``extract_text_sample`` over ``ctx['db_path']``/``ctx['table']``, or an
|
||||
in-memory ``ctx['text_raw']`` for tests) and kept only if the **median word
|
||||
count is ``>= _MIN_WORDS``** — i.e. it is genuinely long text, not a long
|
||||
single token. If no column survives, the chapter returns ``None``.
|
||||
|
||||
Per surviving column the chapter emits, kept together on its own page/slide
|
||||
(``Group(page_break_before=...)``):
|
||||
|
||||
- a key/value summary (documents, length percentiles, vocabulary richness with
|
||||
**[[term:ttr]]TTR[[/term]]** and **[[term:hapax]]hapax legomena[[/term]]**,
|
||||
dominant language, exact-duplicate %, readability when available);
|
||||
- a word-count histogram figure;
|
||||
- a top-terms table + a horizontal bar figure;
|
||||
- bigram and trigram frequency tables;
|
||||
- a detected-language bar figure (when ``langdetect`` is available);
|
||||
- an optional word-cloud figure (only when ``wordcloud`` is installed);
|
||||
- a closing note on duplicates / readability degradation.
|
||||
|
||||
Every metric is delegated to pure ``eda`` registry functions
|
||||
(``compute_text_length_stats``, ``compute_vocabulary_stats``,
|
||||
``compute_top_ngrams``, ``detect_corpus_language``, ``compute_text_duplicates``,
|
||||
``compute_text_readability``) and the raw sample to ``extract_text_sample``; all
|
||||
are imported defensively so a missing function or optional library degrades that
|
||||
single piece to a note instead of aborting the chapter. Optional libraries
|
||||
(``langdetect``, ``textstat``, ``wordcloud``, ``datasketch``) are never required:
|
||||
the piece is silently omitted when they are absent.
|
||||
|
||||
Contract: build_<id>(profile, ctx) -> Chapter | None ; CHAPTER_VERSION = "x.y.z".
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
from .. import model
|
||||
|
||||
CHAPTER_VERSION = "1.0.0"
|
||||
CHAPTER_ID = "text_distr"
|
||||
CHAPTER_TITLE = "Texto libre (NLP)"
|
||||
|
||||
# Cheap activation gate (characters): a non-numeric column whose mean string
|
||||
# length reaches this is a candidate for "long text". Short labels (titanic's
|
||||
# Name ≈ 27 chars) stay below it, so the chapter does not fire on them.
|
||||
_MIN_LEN_CHARS = 50
|
||||
# Confirmation gate (words): a candidate is kept only if its median document has
|
||||
# at least this many words — genuine prose, not a long id/URL token.
|
||||
_MIN_WORDS = 20
|
||||
# Bound the document so very wide datasets stay readable.
|
||||
_MAX_TEXT_COLS = 5
|
||||
# Raw text rows to sample per column when the chapter must extract them itself.
|
||||
_SAMPLE_ROWS = 2000
|
||||
# Rows shown in the frequency tables.
|
||||
_TOP_TERMS = 15
|
||||
_TOP_NGRAMS = 10
|
||||
|
||||
# Glossary terms this chapter explains (registered in the shared collector and
|
||||
# marked clickable on first appearance — same mechanism as cat_distr's entropía).
|
||||
_TERMS = {
|
||||
"ttr": (
|
||||
"TTR (type-token ratio)",
|
||||
"Riqueza léxica de un texto: número de palabras distintas (tipos) "
|
||||
"dividido por el número total de palabras (tokens). Vale 1 cuando no se "
|
||||
"repite ninguna palabra (máxima variedad) y baja hacia 0 cuando el "
|
||||
"vocabulario se repite mucho. Depende de la longitud del corpus, así que "
|
||||
"compara mejor textos de tamaño parecido."),
|
||||
"hapax": (
|
||||
"Hapax legomena",
|
||||
"Palabras que aparecen una sola vez en todo el corpus. Un porcentaje "
|
||||
"alto de hapax indica vocabulario muy variado o, a veces, ruido "
|
||||
"(erratas, identificadores, tokens raros). Se expresa como porcentaje "
|
||||
"sobre el número de palabras distintas."),
|
||||
}
|
||||
|
||||
|
||||
def _fmt_int(value) -> str:
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
return f"{int(value):,}".replace(",", ".")
|
||||
except (TypeError, ValueError):
|
||||
return str(value)
|
||||
|
||||
|
||||
def _fmt_num(value, decimals: int = 2) -> str:
|
||||
if value is None:
|
||||
return "—"
|
||||
if isinstance(value, bool):
|
||||
return str(value)
|
||||
if isinstance(value, int):
|
||||
return f"{value:,}".replace(",", ".")
|
||||
if isinstance(value, float):
|
||||
if value != value: # NaN
|
||||
return "NaN"
|
||||
if value in (float("inf"), float("-inf")):
|
||||
return str(value)
|
||||
text = f"{value:.{decimals}f}".rstrip("0").rstrip(".")
|
||||
return text if text else "0"
|
||||
return str(value)
|
||||
|
||||
|
||||
def _fmt_pct(value, decimals: int = 1) -> str:
|
||||
if value is None:
|
||||
return "—"
|
||||
try:
|
||||
return f"{float(value):.{decimals}f}%"
|
||||
except (TypeError, ValueError):
|
||||
return str(value)
|
||||
|
||||
|
||||
def _truncate(text, limit: int = 40) -> str:
|
||||
s = model._safe_str(text)
|
||||
return s if len(s) <= limit else s[: max(1, limit - 1)].rstrip() + "…"
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Defensive wrappers around the registry functions: each returns the function's
|
||||
# output dict or a safe empty default, never raising and never importing at
|
||||
# module load (so the chapter stays importable even if a function is missing).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _length_stats(texts) -> dict:
|
||||
try:
|
||||
from datascience.compute_text_length_stats import compute_text_length_stats
|
||||
out = compute_text_length_stats(texts)
|
||||
if isinstance(out, dict):
|
||||
return out
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
return {}
|
||||
|
||||
|
||||
def _vocab_stats(texts) -> dict:
|
||||
try:
|
||||
from datascience.compute_vocabulary_stats import compute_vocabulary_stats
|
||||
out = compute_vocabulary_stats(texts, top_k=_TOP_TERMS)
|
||||
if isinstance(out, dict):
|
||||
return out
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
return {}
|
||||
|
||||
|
||||
def _ngrams(texts, n) -> list:
|
||||
try:
|
||||
from datascience.compute_top_ngrams import compute_top_ngrams
|
||||
out = compute_top_ngrams(texts, n=n, top_k=_TOP_NGRAMS)
|
||||
if isinstance(out, dict):
|
||||
return out.get("top") or []
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
return []
|
||||
|
||||
|
||||
def _language(texts) -> dict:
|
||||
try:
|
||||
from datascience.detect_corpus_language import detect_corpus_language
|
||||
out = detect_corpus_language(texts)
|
||||
if isinstance(out, dict):
|
||||
return out
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
return {"available": False, "distribution": [], "dominant": None}
|
||||
|
||||
|
||||
def _duplicates(texts) -> dict:
|
||||
try:
|
||||
from datascience.compute_text_duplicates import compute_text_duplicates
|
||||
out = compute_text_duplicates(texts)
|
||||
if isinstance(out, dict):
|
||||
return out
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
return {}
|
||||
|
||||
|
||||
def _readability(texts) -> dict:
|
||||
try:
|
||||
from datascience.compute_text_readability import compute_text_readability
|
||||
out = compute_text_readability(texts)
|
||||
if isinstance(out, dict):
|
||||
return out
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
return {"available": False, "flesch": {}}
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Candidate detection + raw sample acquisition.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _candidate_columns(profile: dict) -> list:
|
||||
"""Cheap gate: non-numeric columns whose mean char length reaches the
|
||||
threshold. Returns the list of column names (possibly empty)."""
|
||||
out = []
|
||||
for col in profile.get("columns") or []:
|
||||
if not isinstance(col, dict):
|
||||
continue
|
||||
if col.get("inferred_type") == "numeric":
|
||||
continue
|
||||
cat = col.get("categorical")
|
||||
if not isinstance(cat, dict):
|
||||
continue
|
||||
len_mean = cat.get("len_mean")
|
||||
if isinstance(len_mean, (int, float)) and not isinstance(len_mean, bool) \
|
||||
and len_mean >= _MIN_LEN_CHARS:
|
||||
name = col.get("name")
|
||||
if name:
|
||||
out.append(str(name))
|
||||
return out
|
||||
|
||||
|
||||
def _get_samples(profile: dict, ctx: dict, columns: list) -> dict:
|
||||
"""Return {col: [str, ...]} raw text samples for the candidate columns.
|
||||
|
||||
Prefers an in-memory ``ctx['text_raw']`` (used by tests); otherwise pushes a
|
||||
sample down to the database via ``extract_text_sample`` using ctx db_path /
|
||||
table. Never raises: returns {} when no sample can be obtained."""
|
||||
text_raw = ctx.get("text_raw")
|
||||
if isinstance(text_raw, dict) and text_raw:
|
||||
return {c: [str(v) for v in (text_raw.get(c) or []) if v is not None]
|
||||
for c in columns if text_raw.get(c)}
|
||||
|
||||
db_path = ctx.get("db_path")
|
||||
table = ctx.get("table")
|
||||
if not db_path or not table:
|
||||
return {}
|
||||
backend = ctx.get("backend") or "duckdb"
|
||||
sample = ctx.get("sample") or _SAMPLE_ROWS
|
||||
try:
|
||||
from datascience.extract_text_sample import extract_text_sample
|
||||
out = extract_text_sample(db_path, table, columns, backend=backend,
|
||||
sample=sample)
|
||||
if isinstance(out, dict) and out.get("status") == "ok":
|
||||
cols = out.get("columns")
|
||||
if isinstance(cols, dict):
|
||||
return {c: list(v) for c, v in cols.items() if v}
|
||||
except Exception: # noqa: BLE001 — dict-no-throw: no sample → chapter omits.
|
||||
pass
|
||||
return {}
|
||||
|
||||
|
||||
def _confirm_long_text(samples: dict) -> dict:
|
||||
"""Keep only columns whose median word count reaches _MIN_WORDS. Returns
|
||||
{col: length_stats_dict} for the survivors, in input order."""
|
||||
survivors = {}
|
||||
for col, texts in samples.items():
|
||||
stats = _length_stats(texts)
|
||||
words = stats.get("words") if isinstance(stats, dict) else None
|
||||
median = words.get("p50") if isinstance(words, dict) else None
|
||||
if isinstance(median, (int, float)) and not isinstance(median, bool) \
|
||||
and median >= _MIN_WORDS:
|
||||
survivors[col] = stats
|
||||
return survivors
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Figures (lazy matplotlib, scaled by the renderers — same style as num_distr).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _hist_figure(name: str, length_stats: dict):
|
||||
def make():
|
||||
import matplotlib
|
||||
matplotlib.use("Agg")
|
||||
from matplotlib.figure import Figure
|
||||
fig = Figure(figsize=(6.2, 3.0))
|
||||
ax = fig.add_subplot(111)
|
||||
bins = (length_stats or {}).get("word_hist") or []
|
||||
drew = False
|
||||
for b in bins:
|
||||
if not isinstance(b, dict):
|
||||
continue
|
||||
lo, hi, count = b.get("lo"), b.get("hi"), b.get("count") or 0
|
||||
if lo is None or hi is None:
|
||||
continue
|
||||
width = (hi - lo) if hi > lo else max(abs(lo) * 1e-3, 1e-6)
|
||||
ax.bar(lo, count, width=width, align="edge", color="#9ec6df",
|
||||
edgecolor="#5b8aa6", linewidth=0.4)
|
||||
drew = True
|
||||
if not drew:
|
||||
ax.text(0.5, 0.5, "(sin datos de longitud)", ha="center",
|
||||
va="center", color="#8a8a8a", transform=ax.transAxes)
|
||||
ax.set_xlabel("palabras por documento", fontsize=8)
|
||||
ax.set_ylabel("nº de documentos", fontsize=8)
|
||||
ax.tick_params(labelsize=7)
|
||||
for spine in ("top", "right"):
|
||||
ax.spines[spine].set_visible(False)
|
||||
ax.set_title(f"Longitud de «{_truncate(name, 30)}»", fontsize=10,
|
||||
loc="left")
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
return make
|
||||
|
||||
|
||||
def _barh_figure(title: str, items: list, label_key: str, value_key: str,
|
||||
xlabel: str):
|
||||
"""Horizontal bar chart from [{label_key:..., value_key:...}, ...]."""
|
||||
def make():
|
||||
import matplotlib
|
||||
matplotlib.use("Agg")
|
||||
from matplotlib.figure import Figure
|
||||
rows = [it for it in (items or []) if isinstance(it, dict)
|
||||
and isinstance(it.get(value_key), (int, float))]
|
||||
rows = rows[:12]
|
||||
fig = Figure(figsize=(6.2, max(2.2, 0.32 * len(rows) + 0.8)))
|
||||
ax = fig.add_subplot(111)
|
||||
if not rows:
|
||||
ax.text(0.5, 0.5, "(sin datos)", ha="center", va="center",
|
||||
color="#8a8a8a", transform=ax.transAxes)
|
||||
ax.axis("off")
|
||||
return fig
|
||||
labels = [_truncate(r.get(label_key), 28) for r in rows][::-1]
|
||||
values = [float(r.get(value_key) or 0) for r in rows][::-1]
|
||||
ypos = range(len(rows))
|
||||
ax.barh(list(ypos), values, color="#9ec6df", edgecolor="#5b8aa6",
|
||||
linewidth=0.4)
|
||||
ax.set_yticks(list(ypos))
|
||||
ax.set_yticklabels(labels, fontsize=7)
|
||||
ax.set_xlabel(xlabel, fontsize=8)
|
||||
ax.tick_params(labelsize=7)
|
||||
for spine in ("top", "right"):
|
||||
ax.spines[spine].set_visible(False)
|
||||
ax.set_title(_truncate(title, 44), fontsize=10, loc="left")
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
return make
|
||||
|
||||
|
||||
def _wordcloud_figure(texts):
|
||||
"""Word-cloud figure callable, or None if wordcloud is not installed."""
|
||||
try:
|
||||
import wordcloud # noqa: F401
|
||||
except Exception: # noqa: BLE001 — optional dependency: omit the figure.
|
||||
return None
|
||||
|
||||
def make():
|
||||
import matplotlib
|
||||
matplotlib.use("Agg")
|
||||
from matplotlib.figure import Figure
|
||||
from wordcloud import WordCloud
|
||||
fig = Figure(figsize=(6.2, 3.2))
|
||||
ax = fig.add_subplot(111)
|
||||
joined = " ".join(t for t in texts if isinstance(t, str))
|
||||
try:
|
||||
wc = WordCloud(width=800, height=400, background_color="white",
|
||||
colormap="viridis").generate(joined)
|
||||
ax.imshow(wc, interpolation="bilinear")
|
||||
except Exception: # noqa: BLE001
|
||||
ax.text(0.5, 0.5, "(nube de palabras no disponible)", ha="center",
|
||||
va="center", color="#8a8a8a", transform=ax.transAxes)
|
||||
ax.axis("off")
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
return make
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Per-column block assembly.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _summary_kv(n_docs, length_stats, vocab, lang, dup, read):
|
||||
chars = (length_stats or {}).get("chars") or {}
|
||||
words = (length_stats or {}).get("words") or {}
|
||||
sents = (length_stats or {}).get("sentences") or {}
|
||||
rows = [
|
||||
("Documentos", _fmt_int(n_docs)),
|
||||
("Caracteres (media · p50 · p90 · p99)",
|
||||
f"{_fmt_num(chars.get('mean'))} · {_fmt_int(chars.get('p50'))} · "
|
||||
f"{_fmt_int(chars.get('p90'))} · {_fmt_int(chars.get('p99'))}"),
|
||||
("Palabras (media · p50 · p90 · p99)",
|
||||
f"{_fmt_num(words.get('mean'))} · {_fmt_int(words.get('p50'))} · "
|
||||
f"{_fmt_int(words.get('p90'))} · {_fmt_int(words.get('p99'))}"),
|
||||
("Frases (media · máx)",
|
||||
f"{_fmt_num(sents.get('mean'))} · {_fmt_int(sents.get('max'))}"),
|
||||
("Vocabulario (tokens · tipos · TTR)",
|
||||
f"{_fmt_int(vocab.get('n_tokens'))} · {_fmt_int(vocab.get('n_types'))} "
|
||||
f"· {_fmt_num(vocab.get('ttr'), 3)}"),
|
||||
("Hapax legomena",
|
||||
f"{_fmt_int(vocab.get('n_hapax'))} ({_fmt_pct(vocab.get('hapax_pct'))})"),
|
||||
]
|
||||
if isinstance(lang, dict) and lang.get("available"):
|
||||
dom = lang.get("dominant")
|
||||
n_langs = len(lang.get("distribution") or [])
|
||||
rows.append(("Idioma dominante · nº idiomas",
|
||||
f"{model._safe_str(dom) or '—'} · {_fmt_int(n_langs)}"))
|
||||
if isinstance(dup, dict) and dup.get("n_docs"):
|
||||
rows.append(("Duplicados exactos",
|
||||
f"{_fmt_int(dup.get('n_exact_dup'))} "
|
||||
f"({_fmt_pct(dup.get('exact_dup_pct'))})"))
|
||||
if isinstance(read, dict) and read.get("available"):
|
||||
flesch = read.get("flesch") or {}
|
||||
rows.append(("Legibilidad Flesch (media)",
|
||||
_fmt_num(flesch.get("mean"), 1)))
|
||||
return model.KVTable(rows=rows, title="Resumen del texto")
|
||||
|
||||
|
||||
def _terms_table(vocab) -> "model.DataTable | None":
|
||||
top = (vocab or {}).get("top_terms") or []
|
||||
rows = [[_truncate(t.get("term"), 32), _fmt_int(t.get("count")),
|
||||
_fmt_pct(t.get("pct"))]
|
||||
for t in top[:_TOP_TERMS] if isinstance(t, dict)]
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(header=["Término", "Conteo", "% tokens"], rows=rows,
|
||||
title="Términos más frecuentes",
|
||||
note="stopwords ES+EN eliminadas")
|
||||
|
||||
|
||||
def _ngram_table(items, n_label) -> "model.DataTable | None":
|
||||
rows = [[_truncate(it.get("ngram"), 40), _fmt_int(it.get("count"))]
|
||||
for it in (items or [])[:_TOP_NGRAMS] if isinstance(it, dict)]
|
||||
if not rows:
|
||||
return None
|
||||
return model.DataTable(header=[n_label, "Conteo"], rows=rows,
|
||||
title=f"{n_label} más frecuentes")
|
||||
|
||||
|
||||
def _dup_note(dup, lang, read) -> "model.Note | None":
|
||||
bits = []
|
||||
if isinstance(dup, dict):
|
||||
nd = dup.get("near_dup") or {}
|
||||
if nd.get("available"):
|
||||
bits.append(
|
||||
f"casi-duplicados detectados (MinHash, umbral "
|
||||
f"{_fmt_num(nd.get('threshold'))}): "
|
||||
f"{_fmt_int(nd.get('n_near_dup_docs'))} documentos")
|
||||
else:
|
||||
bits.append("near-duplicados no calculados (datasketch no instalado; "
|
||||
"se reportan solo los duplicados exactos por hash)")
|
||||
if isinstance(lang, dict) and not lang.get("available"):
|
||||
bits.append("detección de idioma omitida (langdetect no instalado)")
|
||||
if isinstance(read, dict) and not read.get("available"):
|
||||
bits.append("legibilidad omitida (textstat no instalado)")
|
||||
if not bits:
|
||||
return None
|
||||
return model.Note(" · ".join(bits))
|
||||
|
||||
|
||||
def _column_group(name, texts, length_stats, idx, mark_terms):
|
||||
vocab = _vocab_stats(texts)
|
||||
lang = _language(texts)
|
||||
dup = _duplicates(texts)
|
||||
read = _readability(texts)
|
||||
n_docs = (length_stats or {}).get("n_docs")
|
||||
|
||||
blocks = [
|
||||
model.Heading(text=str(name), level=2),
|
||||
_summary_kv(n_docs, length_stats, vocab, lang, dup, read),
|
||||
model.Figure(make=_hist_figure(name, length_stats),
|
||||
caption=f"Distribución de la longitud (palabras) de "
|
||||
f"«{_truncate(name, 30)}»."),
|
||||
]
|
||||
|
||||
terms_tbl = _terms_table(vocab)
|
||||
if terms_tbl is not None:
|
||||
blocks.append(terms_tbl)
|
||||
blocks.append(model.Figure(
|
||||
make=_barh_figure(f"Top términos de «{_truncate(name, 24)}»",
|
||||
vocab.get("top_terms"), "term", "count",
|
||||
"conteo"),
|
||||
caption="Términos más frecuentes (barras)."))
|
||||
|
||||
bi_tbl = _ngram_table(_ngrams(texts, 2), "Bigrama")
|
||||
if bi_tbl is not None:
|
||||
blocks.append(bi_tbl)
|
||||
tri_tbl = _ngram_table(_ngrams(texts, 3), "Trigrama")
|
||||
if tri_tbl is not None:
|
||||
blocks.append(tri_tbl)
|
||||
|
||||
if isinstance(lang, dict) and lang.get("available") \
|
||||
and lang.get("distribution"):
|
||||
blocks.append(model.Figure(
|
||||
make=_barh_figure(f"Idiomas detectados en «{_truncate(name, 24)}»",
|
||||
lang.get("distribution"), "lang", "count",
|
||||
"documentos"),
|
||||
caption="Distribución de idiomas detectados (langdetect)."))
|
||||
|
||||
wc = _wordcloud_figure(texts)
|
||||
if wc is not None:
|
||||
blocks.append(model.Figure(
|
||||
make=wc, caption=f"Nube de palabras de «{_truncate(name, 30)}»."))
|
||||
|
||||
note = _dup_note(dup, lang, read)
|
||||
if note is not None:
|
||||
blocks.append(note)
|
||||
|
||||
return model.Group(blocks=blocks, page_break_before=(idx > 0))
|
||||
|
||||
|
||||
def _intro_blocks(n_cols, mark_terms):
|
||||
ttr = ("[[term:ttr]]TTR[[/term]]" if mark_terms else "TTR")
|
||||
hapax = ("[[term:hapax]]hapax legomena[[/term]]" if mark_terms
|
||||
else "hapax legomena")
|
||||
text = (
|
||||
f"Este capítulo perfila las columnas de **texto libre largo** del "
|
||||
f"dataset (reseñas, descripciones, comentarios): contenido lingüístico "
|
||||
f"que la distribución categórica no resume bien. Para cada columna se "
|
||||
f"muestran la longitud de los documentos, la riqueza de vocabulario "
|
||||
f"(incluido el {ttr} y el porcentaje de {hapax}), los términos y "
|
||||
f"n-gramas más frecuentes, los idiomas detectados y el nivel de "
|
||||
f"duplicación. Las métricas son baratas y sin modelos pesados; las "
|
||||
f"piezas que dependen de una librería opcional se omiten si no está "
|
||||
f"instalada.")
|
||||
return [
|
||||
model.Heading(text=CHAPTER_TITLE, level=1),
|
||||
model.Markdown(text=text),
|
||||
]
|
||||
|
||||
|
||||
def build_text_distr(profile: dict, ctx: dict):
|
||||
"""Build the free-text Chapter, or None if no long-text column applies."""
|
||||
profile = profile or {}
|
||||
ctx = ctx or {}
|
||||
|
||||
# 1) Cheap gate from the profile (no DB access yet).
|
||||
candidates = _candidate_columns(profile)
|
||||
if not candidates:
|
||||
return None
|
||||
|
||||
# 2) Raw sample + 3) confirm genuine long text (median words >= threshold).
|
||||
samples = _get_samples(profile, ctx, candidates)
|
||||
if not samples:
|
||||
return None
|
||||
survivors = _confirm_long_text(samples)
|
||||
if not survivors:
|
||||
return None
|
||||
|
||||
# Register glossary terms (clickable) once we know the chapter applies.
|
||||
glossary = ctx.get("glossary")
|
||||
mark_terms = False
|
||||
if isinstance(glossary, model.GlossaryCollector):
|
||||
for key, (label, definition) in _TERMS.items():
|
||||
glossary.add(key, label, definition)
|
||||
mark_terms = True
|
||||
|
||||
blocks = list(_intro_blocks(len(survivors), mark_terms))
|
||||
|
||||
rendered = list(survivors.items())[:_MAX_TEXT_COLS]
|
||||
for idx, (name, length_stats) in enumerate(rendered):
|
||||
texts = samples.get(name) or []
|
||||
blocks.append(_column_group(name, texts, length_stats, idx, mark_terms))
|
||||
|
||||
if len(survivors) > len(rendered):
|
||||
omitted = len(survivors) - len(rendered)
|
||||
blocks.append(model.Note(
|
||||
f"Se muestran las primeras {len(rendered)} columnas de texto; "
|
||||
f"quedan {omitted} sin mostrar para mantener acotado el informe."))
|
||||
|
||||
return model.Chapter(id=CHAPTER_ID, title=CHAPTER_TITLE,
|
||||
version=CHAPTER_VERSION, blocks=blocks)
|
||||
@@ -0,0 +1,256 @@
|
||||
"""Tests for the TEXT DISTR chapter — DoD: golden + edges + degradation.
|
||||
|
||||
Self-contained: builds synthetic TableProfiles and feeds the raw text sample
|
||||
in-memory through ``ctx['text_raw']`` (no DuckDB needed), so the suite is fast
|
||||
and deterministic. Verifies that ``build_text_distr``:
|
||||
|
||||
- GOLDEN: with a long-text column, emits the chapter with its key blocks
|
||||
(length summary, word histogram, top-terms table, n-gram tables, language
|
||||
bars) and registers the clickable glossary terms; and that it renders inside
|
||||
the full document to both PDF and PPTX showing that content.
|
||||
- EDGE (None): a dataset whose only string column is short labels (titanic-like
|
||||
``Name``) yields ``None`` without raising — the existing report is untouched.
|
||||
- EDGE (None): a column that passes the cheap char gate but whose documents are
|
||||
short (median words below the threshold) is rejected at the confirmation step.
|
||||
- DEGRADATION: with ``langdetect`` / ``textstat`` / ``wordcloud`` unavailable,
|
||||
the chapter still builds (those pieces are omitted) and never raises.
|
||||
"""
|
||||
|
||||
import builtins
|
||||
import os
|
||||
import tempfile
|
||||
|
||||
from pypdf import PdfReader
|
||||
from pptx import Presentation
|
||||
|
||||
from datascience.automatic_eda.model import (
|
||||
DataTable, Figure, GlossaryCollector, Group, Heading, KVTable, Markdown,
|
||||
Note,
|
||||
)
|
||||
from datascience.automatic_eda.chapters.text_distr import (
|
||||
CHAPTER_ID, CHAPTER_VERSION, build_text_distr,
|
||||
)
|
||||
from datascience.automatic_eda.chapters_registry import build_document
|
||||
from datascience.render_automatic_eda_pdf import render_automatic_eda_pdf
|
||||
from datascience.render_automatic_eda_pptx import render_automatic_eda_pptx
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Synthetic corpus + profiles.
|
||||
# --------------------------------------------------------------------------- #
|
||||
_ES = [
|
||||
"El producto llegó en perfecto estado y mucho antes de lo previsto por la tienda",
|
||||
"La calidad de los materiales es realmente excelente y se nota la diferencia al usarlo",
|
||||
"No me convenció del todo porque esperaba bastante más por el precio que pagué finalmente",
|
||||
"El servicio de atención al cliente fue rápido amable y resolvió mi problema sin demora",
|
||||
"Lo recomiendo totalmente ya que ha superado con creces todas mis expectativas iniciales",
|
||||
]
|
||||
_EN = [
|
||||
"The product arrived in perfect condition and much earlier than the store had promised me",
|
||||
"The build quality is genuinely outstanding and you can really feel the difference using it",
|
||||
"I was not fully convinced because I expected quite a lot more for the price i finally paid",
|
||||
"Customer support was fast friendly and solved my whole problem without any delay at all",
|
||||
"I highly recommend it since it has exceeded by far every one of my initial expectations",
|
||||
]
|
||||
|
||||
|
||||
def _long_reviews(n=40) -> list:
|
||||
"""A corpus of long multi-sentence reviews (>= 20 words each), mixing two
|
||||
languages and including a few exact duplicates."""
|
||||
out = []
|
||||
for i in range(n):
|
||||
base = _ES if i % 3 != 0 else _EN # mostly ES, some EN
|
||||
a = base[i % len(base)]
|
||||
b = base[(i + 2) % len(base)]
|
||||
out.append(f"{a}. {b}.")
|
||||
# Inject a couple of exact duplicates.
|
||||
out.append(out[0])
|
||||
out.append(out[1])
|
||||
return out
|
||||
|
||||
|
||||
def _text_profile() -> dict:
|
||||
"""Profile with a long free-text column (review) + a numeric + a short cat."""
|
||||
return {
|
||||
"table": "reviews",
|
||||
"source": "/data/reviews.duckdb",
|
||||
"profiled_at": "2026-06-30T10:00:00+00:00",
|
||||
"n_rows": 42,
|
||||
"n_cols": 3,
|
||||
"quality_score": 88.0,
|
||||
"columns": [
|
||||
{
|
||||
"name": "review",
|
||||
"inferred_type": "categorical",
|
||||
"categorical": {
|
||||
"top": [{"value": "x", "count": 2, "pct": 0.05}],
|
||||
"n_distinct": 40,
|
||||
"len_mean": 180.0,
|
||||
"len_min": 80,
|
||||
"len_max": 220,
|
||||
},
|
||||
},
|
||||
{
|
||||
"name": "rating",
|
||||
"inferred_type": "numeric",
|
||||
"numeric": {"mean": 3.1, "median": 3.0, "std": 1.2,
|
||||
"min": 1, "max": 5},
|
||||
},
|
||||
{
|
||||
"name": "product",
|
||||
"inferred_type": "categorical",
|
||||
"categorical": {
|
||||
"top": [{"value": "teclado", "count": 10, "pct": 0.25}],
|
||||
"n_distinct": 6,
|
||||
"len_mean": 7.0,
|
||||
"len_min": 5, "len_max": 11,
|
||||
},
|
||||
},
|
||||
],
|
||||
}
|
||||
|
||||
|
||||
def _no_text_profile() -> dict:
|
||||
"""titanic-like: the only string column is short labels (Name ≈ 27 chars)."""
|
||||
return {
|
||||
"table": "titanic",
|
||||
"n_rows": 891,
|
||||
"n_cols": 3,
|
||||
"columns": [
|
||||
{"name": "Age", "inferred_type": "numeric",
|
||||
"numeric": {"mean": 29.7, "median": 28.0, "std": 14.5}},
|
||||
{"name": "Name", "inferred_type": "categorical",
|
||||
"categorical": {"top": [{"value": "Braund, Mr. Owen Harris",
|
||||
"count": 1, "pct": 0.001}],
|
||||
"n_distinct": 891, "len_mean": 27.0,
|
||||
"len_min": 12, "len_max": 82}},
|
||||
{"name": "Sex", "inferred_type": "categorical",
|
||||
"categorical": {"top": [{"value": "male", "count": 577,
|
||||
"pct": 0.65}],
|
||||
"n_distinct": 2, "len_mean": 4.6,
|
||||
"len_min": 4, "len_max": 6}},
|
||||
],
|
||||
}
|
||||
|
||||
|
||||
def _flatten(blocks) -> list:
|
||||
"""Recursively flatten Group blocks so tests can inspect leaf blocks."""
|
||||
out = []
|
||||
for b in blocks:
|
||||
if isinstance(b, Group):
|
||||
out.extend(_flatten(b.blocks))
|
||||
else:
|
||||
out.append(b)
|
||||
return out
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Golden.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_golden_activa_con_texto():
|
||||
glossary = GlossaryCollector()
|
||||
ctx = {"text_raw": {"review": _long_reviews()}, "glossary": glossary}
|
||||
ch = build_text_distr(_text_profile(), ctx)
|
||||
|
||||
assert ch is not None, "el capítulo debe activarse con una columna de texto largo"
|
||||
assert ch.id == CHAPTER_ID
|
||||
assert ch.version == CHAPTER_VERSION
|
||||
leaves = _flatten(ch.blocks)
|
||||
kinds = [b.kind for b in leaves]
|
||||
assert "heading" in kinds
|
||||
assert "kv_table" in kinds # summary
|
||||
assert "figure" in kinds # histogram / bars
|
||||
assert "data_table" in kinds # top terms + n-grams
|
||||
|
||||
# KV summary mentions vocabulary metrics.
|
||||
kv = next(b for b in leaves if isinstance(b, KVTable))
|
||||
labels = " ".join(str(r[0]) for r in kv.rows)
|
||||
assert "TTR" in labels
|
||||
assert "Hapax" in labels or "hapax" in labels
|
||||
|
||||
# There is a terms table and at least one n-gram table.
|
||||
titles = [getattr(b, "title", "") or "" for b in leaves
|
||||
if isinstance(b, DataTable)]
|
||||
assert any("Términos" in t for t in titles)
|
||||
assert any("Bigrama" in t for t in titles)
|
||||
|
||||
# Glossary terms were registered (clickable destinations).
|
||||
assert glossary.has("ttr")
|
||||
assert glossary.has("hapax")
|
||||
|
||||
|
||||
def test_golden_render_pdf_pptx():
|
||||
profile = _text_profile()
|
||||
ctx = {"text_raw": {"review": _long_reviews()},
|
||||
"dataset_name": "reviews"}
|
||||
chapters = build_document(profile, ctx)
|
||||
ids = [c.id for c in chapters]
|
||||
assert "text_distr" in ids, f"text_distr ausente en {ids}"
|
||||
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
pdf = os.path.join(d, "t.pdf")
|
||||
pptx = os.path.join(d, "t.pptx")
|
||||
rp = render_automatic_eda_pdf(profile, pdf, {"title": "EDA", "ctx": ctx})
|
||||
rx = render_automatic_eda_pptx(profile, pptx, {"title": "EDA", "ctx": ctx})
|
||||
assert rp.get("path") and os.path.exists(pdf)
|
||||
assert rx.get("path") and os.path.exists(pptx)
|
||||
|
||||
text = "\n".join(p.extract_text() or "" for p in PdfReader(pdf).pages)
|
||||
assert "Texto libre" in text or "TTR" in text
|
||||
|
||||
prs = Presentation(pptx)
|
||||
ptext = []
|
||||
for slide in prs.slides:
|
||||
for shp in slide.shapes:
|
||||
if shp.has_text_frame:
|
||||
ptext.append(shp.text_frame.text)
|
||||
joined = "\n".join(ptext)
|
||||
assert "Texto libre" in joined or "TTR" in joined
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Edges — None.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_edge_none_sin_texto_largo():
|
||||
# titanic-like: short labels only → chapter must not apply.
|
||||
assert build_text_distr(_no_text_profile(), {}) is None
|
||||
|
||||
|
||||
def test_edge_none_palabras_cortas():
|
||||
# Char gate passes (len_mean high) but documents are short → confirmation
|
||||
# rejects them (median words below threshold).
|
||||
profile = _text_profile()
|
||||
short = ["palabra " * 3] * 30 # 3 words each, < _MIN_WORDS
|
||||
ctx = {"text_raw": {"review": short}}
|
||||
assert build_text_distr(profile, ctx) is None
|
||||
|
||||
|
||||
def test_edge_none_empty_profile():
|
||||
assert build_text_distr({}, {}) is None
|
||||
assert build_text_distr(None, None) is None
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Degradation — optional libs absent.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_degradacion_sin_libs(monkeypatch):
|
||||
real_import = builtins.__import__
|
||||
blocked = ("langdetect", "textstat", "wordcloud", "datasketch")
|
||||
|
||||
def fake_import(name, *a, **k):
|
||||
if name in blocked or any(name.startswith(b + ".") for b in blocked):
|
||||
raise ImportError(f"simulado: {name}")
|
||||
return real_import(name, *a, **k)
|
||||
|
||||
monkeypatch.setattr(builtins, "__import__", fake_import)
|
||||
|
||||
ctx = {"text_raw": {"review": _long_reviews()}}
|
||||
ch = build_text_distr(_text_profile(), ctx)
|
||||
# Still builds (the cheap, stdlib-only pieces remain) and never raises.
|
||||
assert ch is not None
|
||||
leaves = _flatten(ch.blocks)
|
||||
assert any(isinstance(b, KVTable) for b in leaves)
|
||||
assert any(isinstance(b, DataTable) for b in leaves)
|
||||
# A degradation note is present mentioning the missing optional libs.
|
||||
notes = " ".join(b.text for b in leaves if isinstance(b, Note))
|
||||
assert "langdetect" in notes or "textstat" in notes or "datasketch" in notes
|
||||
@@ -31,7 +31,9 @@ CHAPTER_ORDER = [
|
||||
"analisis_llm", # LLM interpretation — sits next to overview (user request)
|
||||
"num_distr", # numeric distributions
|
||||
"cat_distr", # categorical distributions
|
||||
"text_distr", # free-text / NLP distributions (non-tabular content)
|
||||
"calidad", # data quality
|
||||
"missingness", # missing-data patterns (co-occurrence of absences; MCAR/MAR)
|
||||
"correlacion", # correlations / associations
|
||||
"relaciones", # key relations: declared/candidate PK + FK (inter/intra-table)
|
||||
"modelos", # cheap models (PCA/KMeans/outliers)
|
||||
|
||||
@@ -0,0 +1,253 @@
|
||||
"""Tests for the Markdown completeness appendix (report 2053).
|
||||
|
||||
The AutomaticEDA Markdown is the output meant to be *pasted into an LLM*, so it
|
||||
must carry EVERYTHING the engine computed — even the numbers the human-facing
|
||||
chapters (shared with the PDF/PPTX) drop for readability. ``render_md`` appends a
|
||||
full-data appendix built from ``meta['profile']`` that closes the six losses the
|
||||
evaluation found:
|
||||
|
||||
1. the complete association matrix (every pair, incl. correlation_ratio /
|
||||
cramers_v) — not just the top extremes;
|
||||
2. every numeric statistic for every numeric column (skew/kurtosis/percentiles);
|
||||
3. the concrete recommended re-expression;
|
||||
4. KMeans ``scores_by_k``;
|
||||
5. the normality test statistics;
|
||||
6. correct headers for bar/scree figure tables (not ``Desde/Hasta/Frecuencia``).
|
||||
|
||||
Self-contained: a synthetic profile, no DuckDB, no heavy renderer.
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
import pytest # noqa: F401
|
||||
|
||||
_HERE = os.path.dirname(os.path.abspath(__file__))
|
||||
_FUNCTIONS = os.path.abspath(os.path.join(_HERE, "..", "..", "..")) # python/functions
|
||||
if _FUNCTIONS not in sys.path:
|
||||
sys.path.insert(0, _FUNCTIONS)
|
||||
|
||||
from datascience.automatic_eda import model # noqa: E402
|
||||
from datascience.automatic_eda.render_md_impl import ( # noqa: E402
|
||||
_bars_table,
|
||||
_is_histogram_caption,
|
||||
_profile_appendix,
|
||||
render_md,
|
||||
)
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Synthetic profile fixtures.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _numeric(skew, kurtosis):
|
||||
"""A numeric stat block with every key the appendix serializes."""
|
||||
return {
|
||||
"count": 100, "min": 0.0, "max": 10.0, "mean": 5.0, "median": 5.0,
|
||||
"mode": 4.0, "std": 2.0, "variance": 4.0, "cv": 0.4,
|
||||
"p1": 0.1, "p5": 0.5, "p25": 2.5, "p50": 5.0, "p75": 7.5,
|
||||
"p95": 9.5, "p99": 9.9, "iqr": 5.0, "skew": skew, "kurtosis": kurtosis,
|
||||
"n_outliers": 1, "distribution_type": "normal",
|
||||
}
|
||||
|
||||
|
||||
def _profile():
|
||||
"""A small but structurally faithful TableProfile (3 numeric, 2 categorical)."""
|
||||
pairs = [
|
||||
{"a": "A", "b": "B", "a_type": "numeric", "b_type": "numeric",
|
||||
"method": "pearson/spearman", "value": 0.8,
|
||||
"p_value": 1e-9, "p_value_adjusted": 2e-9, "significant": True},
|
||||
{"a": "A", "b": "C", "a_type": "numeric", "b_type": "numeric",
|
||||
"method": "pearson/spearman", "value": -0.3,
|
||||
"p_value": 0.01, "p_value_adjusted": 0.02, "significant": True},
|
||||
{"a": "A", "b": "Cat1", "a_type": "numeric", "b_type": "categorical",
|
||||
"method": "correlation_ratio", "value": 0.45,
|
||||
"p_value": 0.001, "p_value_adjusted": 0.002, "significant": True},
|
||||
# The single cat-cat pair the human chapter never shows.
|
||||
{"a": "Cat1", "b": "Cat2", "a_type": "categorical",
|
||||
"b_type": "categorical", "method": "cramers_v", "value": 0.11,
|
||||
"p_value": 0.04, "p_value_adjusted": 0.05, "significant": False},
|
||||
]
|
||||
return {
|
||||
"correlations": {
|
||||
"pairs": pairs,
|
||||
"multiple_testing": {"method": "bh", "n_tests": 4, "n_rejected": 3},
|
||||
},
|
||||
"columns": [
|
||||
{"name": "A", "count": 100, "numeric": _numeric(0.0, -1.2),
|
||||
"reexpression": {"recommended": "none", "ladder_power": 1.0,
|
||||
"reason": "symmetric", "alternatives": []}},
|
||||
{"name": "B", "count": 100, "numeric": _numeric(4.77, 33.1),
|
||||
"reexpression": {"recommended": "log1p", "ladder_power": 0.0,
|
||||
"reason": "skew 4.77 with zeros",
|
||||
"alternatives": [{"transform": "yeo-johnson"},
|
||||
{"transform": "sqrt"}]}},
|
||||
{"name": "C", "count": 100, "numeric": _numeric(-0.6, 0.2)},
|
||||
{"name": "Cat1", "categorical": {"top": [], "mode": "x"}},
|
||||
{"name": "Cat2", "categorical": {"top": [], "mode": "y"}},
|
||||
],
|
||||
"models": {
|
||||
"kmeans": {
|
||||
"best_k": 3,
|
||||
"scores_by_k": [
|
||||
{"k": 2, "silhouette": 0.46, "inertia": 900.0},
|
||||
{"k": 3, "silhouette": 0.50, "inertia": 550.0},
|
||||
{"k": 4, "silhouette": 0.38, "inertia": 430.0},
|
||||
],
|
||||
"cluster_sizes": [40, 35, 25],
|
||||
},
|
||||
"normality": {
|
||||
"A": {"n": 100,
|
||||
"jarque_bera": {"stat": 18.7, "p": 8e-5, "normal": False},
|
||||
"dagostino": {"stat": 18.1, "p": 1e-4, "normal": False},
|
||||
"shapiro": {"stat": 0.98, "p": 7e-8, "normal": False},
|
||||
"is_normal": False},
|
||||
"C": {"n": 100,
|
||||
"jarque_bera": {"stat": 2.1, "p": 0.35, "normal": True},
|
||||
"dagostino": {"stat": 1.9, "p": 0.38, "normal": True},
|
||||
"shapiro": {"stat": 0.99, "p": 0.12, "normal": True},
|
||||
"is_normal": True},
|
||||
},
|
||||
},
|
||||
}
|
||||
|
||||
|
||||
def _dummy_chapters():
|
||||
"""A minimal one-chapter document so render_md does not early-return empty."""
|
||||
return model.as_chapters([
|
||||
{"id": "intro", "title": "Intro",
|
||||
"blocks": [{"kind": "markdown", "text": "cuerpo del informe"}]},
|
||||
])
|
||||
|
||||
|
||||
def _render(tmp_path, profile):
|
||||
out = os.path.join(str(tmp_path), "out.md")
|
||||
res = render_md(_dummy_chapters(), out, {"title": "EDA — t", "profile": profile})
|
||||
assert res["path"] == out
|
||||
return open(out, encoding="utf-8").read()
|
||||
|
||||
|
||||
def _table_rows(md, section_title):
|
||||
"""Count data rows of the first Markdown table under ``section_title``."""
|
||||
seg = md.split(section_title, 1)[1]
|
||||
rows, in_t, seen_sep = 0, False, False
|
||||
for ln in seg.splitlines():
|
||||
if ln.startswith("|"):
|
||||
in_t = True
|
||||
stripped = ln.replace("|", "").replace(" ", "")
|
||||
if stripped and set(stripped) == {"-"}:
|
||||
seen_sep = True
|
||||
continue
|
||||
if seen_sep:
|
||||
rows += 1
|
||||
elif in_t and not ln.strip():
|
||||
break
|
||||
return rows
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Golden: every datum the profile holds reaches the .md.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_appendix_lists_all_correlation_pairs(tmp_path):
|
||||
md = _render(tmp_path, _profile())
|
||||
assert "## Apéndice — Datos completos del perfil" in md
|
||||
# All 4 pairs (the real titanic profile has 28; here 4 synthetic).
|
||||
assert _table_rows(md, "### Matriz de asociación") == 4
|
||||
# The cat-cat Cramér's V pair the human chapter drops is present.
|
||||
assert "Cat1 ↔ Cat2" in md
|
||||
assert "cramers_v" in md
|
||||
assert "correlation_ratio" in md
|
||||
|
||||
|
||||
def test_appendix_has_skew_kurtosis_for_every_numeric(tmp_path):
|
||||
md = _render(tmp_path, _profile())
|
||||
seg = md.split("### Estadísticos numéricos completos", 1)[1].split("###", 1)[0]
|
||||
lines = [l for l in seg.splitlines() if l.startswith("|")]
|
||||
header = [h.strip() for h in lines[0].strip("|").split("|")]
|
||||
assert "skew" in header and "kurtosis" in header
|
||||
ski, kui = header.index("skew"), header.index("kurtosis")
|
||||
data = lines[2:] # skip header + separator
|
||||
assert len(data) == 3 # exactly the 3 numeric columns
|
||||
for row in data:
|
||||
cells = [c.strip() for c in row.strip("|").split("|")]
|
||||
assert cells[ski] != "", f"missing skew in {cells[0]}"
|
||||
assert cells[kui] != "", f"missing kurtosis in {cells[0]}"
|
||||
|
||||
|
||||
def test_appendix_has_extended_percentiles(tmp_path):
|
||||
md = _render(tmp_path, _profile())
|
||||
seg = md.split("### Estadísticos numéricos completos", 1)[1]
|
||||
header = [h.strip() for h in seg.splitlines()[2].strip("|").split("|")]
|
||||
for p in ("p1", "p5", "p25", "p75", "p95", "p99"):
|
||||
assert p in header, f"percentile {p} missing from describe header"
|
||||
|
||||
|
||||
def test_appendix_names_concrete_reexpression(tmp_path):
|
||||
md = _render(tmp_path, _profile())
|
||||
assert "### Re-expresión recomendada" in md
|
||||
assert "log1p" in md # the concrete transform, not just "consider re-expressing"
|
||||
assert "yeo-johnson" in md # alternatives listed too
|
||||
|
||||
|
||||
def test_appendix_has_kmeans_scores_by_k(tmp_path):
|
||||
md = _render(tmp_path, _profile())
|
||||
assert "scores_by_k" in md
|
||||
assert _table_rows(md, "#### KMeans — selección de k") == 3 # k=2,3,4
|
||||
|
||||
|
||||
def test_appendix_has_normality_statistics(tmp_path):
|
||||
md = _render(tmp_path, _profile())
|
||||
assert "JB stat" in md # the statistic, not only the p-value
|
||||
assert "Shapiro stat" in md
|
||||
assert _table_rows(md, "#### Tests de normalidad") == 2 # cols A and C
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Edge: a profile missing models / correlations degrades, never raises.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_lite_profile_without_models(tmp_path):
|
||||
prof = _profile()
|
||||
prof.pop("models") # lite: no KMeans/normality
|
||||
md = _render(tmp_path, prof)
|
||||
assert "scores_by_k" not in md # section skipped
|
||||
assert "Matriz de asociación" in md # correlations still dumped
|
||||
assert "## Apéndice" in md
|
||||
|
||||
|
||||
def test_profile_without_correlations(tmp_path):
|
||||
prof = _profile()
|
||||
prof.pop("correlations")
|
||||
md = _render(tmp_path, prof) # must not raise
|
||||
assert "Matriz de asociación" not in md
|
||||
assert "Estadísticos numéricos completos" in md # numeric section still there
|
||||
|
||||
|
||||
def test_no_profile_means_no_appendix(tmp_path):
|
||||
out = os.path.join(str(tmp_path), "noprof.md")
|
||||
res = render_md(_dummy_chapters(), out, {"title": "x"})
|
||||
assert res["path"] == out
|
||||
assert "## Apéndice" not in open(out, encoding="utf-8").read()
|
||||
|
||||
|
||||
def test_appendix_helper_is_defensive():
|
||||
assert _profile_appendix(None) == ""
|
||||
assert _profile_appendix({}) == ""
|
||||
assert _profile_appendix({"columns": []}) == ""
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Loss #6: bar/scree figure tables get a non-misleading header.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_histogram_caption_detection():
|
||||
assert _is_histogram_caption("Histograma de Age")
|
||||
assert _is_histogram_caption("Distribución de Fare")
|
||||
assert not _is_histogram_caption("Media de Survived por Sex")
|
||||
assert not _is_histogram_caption("Varianza explicada (scree PCA)")
|
||||
|
||||
|
||||
def test_bars_table_custom_header():
|
||||
bars = [(0.0, 1.0, 5.0), (1.0, 2.0, 3.0)]
|
||||
hist = _bars_table(bars) # default histogram header
|
||||
assert "| Desde | Hasta | Frecuencia |" in hist
|
||||
bar = _bars_table(bars, ("Inicio", "Fin", "Valor"))
|
||||
assert "| Inicio | Fin | Valor |" in bar
|
||||
assert "Frecuencia" not in bar
|
||||
@@ -139,10 +139,17 @@ class Group:
|
||||
it starts on a fresh page and flows (honest degradation, never cut). Use it to
|
||||
bind ``Heading`` + ``Markdown`` + ``Figure`` of one idea together (see the
|
||||
DISTR NUM / AGREGACION chapters).
|
||||
|
||||
When ``page_break_before`` is True the renderer additionally forces the group
|
||||
to *start* on a fresh page/slide (unless the current one is already empty), so
|
||||
a chapter can give each unit its own page — e.g. one categorical column per
|
||||
page (see CAT DISTR). It is purely additive: the default False keeps the plain
|
||||
keep-together behaviour for every existing chapter.
|
||||
"""
|
||||
|
||||
blocks: list = field(default_factory=list)
|
||||
title: Optional[str] = None
|
||||
page_break_before: bool = False
|
||||
kind: str = field(default="group", init=False)
|
||||
|
||||
|
||||
@@ -228,7 +235,9 @@ def as_block(obj: Any):
|
||||
return Note(text=_safe_str(obj.get("text")))
|
||||
if cls is Group:
|
||||
return Group(blocks=as_blocks(obj.get("blocks")),
|
||||
title=obj.get("title"))
|
||||
title=obj.get("title"),
|
||||
page_break_before=bool(
|
||||
obj.get("page_break_before", False)))
|
||||
if cls is GlossaryEntry:
|
||||
return GlossaryEntry(key=_safe_str(obj.get("key")),
|
||||
label=_safe_str(obj.get("label")),
|
||||
|
||||
@@ -0,0 +1,748 @@
|
||||
"""AutomaticEDA Markdown serializer — one self-contained file to paste to an LLM.
|
||||
|
||||
Same document model as the PDF/PPTX renderers (an ordered list of
|
||||
:class:`Chapter`, each a list of format-independent blocks) but emitted as plain
|
||||
**Markdown** instead of a binary. The goal is different from the other two
|
||||
renderers: a Markdown EDA is meant to be *pasted into an LLM*, so it prioritises
|
||||
TEXT and DATA over visuals. Tables become Markdown tables (every row dumped, no
|
||||
pagination — nothing is cut because there are no pages); a ``Figure`` becomes its
|
||||
caption plus, when possible, the underlying bar/histogram data as a Markdown
|
||||
table (an LLM cannot see the image); glossary term markers are stripped while
|
||||
``**bold**`` is kept (it is valid Markdown).
|
||||
|
||||
dict-no-throw (the ``eda`` group style): :func:`render_md` never raises. On a
|
||||
fatal error it returns ``{path: None, ...}`` with a ``note`` explaining why; a
|
||||
malformed block degrades to a readable note rather than crashing the document.
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import os
|
||||
import re
|
||||
|
||||
from . import model
|
||||
|
||||
# Glossary span markers (kept text, dropped markers). We intentionally do NOT use
|
||||
# ``text_layout.strip_inline_md`` for Markdown blocks because that also removes
|
||||
# ``**bold**`` — valid Markdown we want to preserve when pasting to an LLM.
|
||||
_TERM_OPEN_RE = re.compile(r"\[\[term:[A-Za-z0-9_]+\]\]")
|
||||
_MAX_BAR_ROWS = 100
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Small helpers.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _clean_terms(s) -> str:
|
||||
"""Drop glossary term markers, keeping the visible text (and any **bold**)."""
|
||||
s = model._safe_str(s)
|
||||
s = _TERM_OPEN_RE.sub("", s)
|
||||
return s.replace("[[/term]]", "")
|
||||
|
||||
|
||||
def _cell(v) -> str:
|
||||
"""Render a value as a safe Markdown table cell.
|
||||
|
||||
Escapes pipes (``|`` -> ``\\|``) so they do not break the column layout and
|
||||
folds newlines to ``<br>`` so a multi-line value stays inside one cell. None
|
||||
becomes an empty string.
|
||||
"""
|
||||
s = model._safe_str(v)
|
||||
s = s.replace("|", "\\|")
|
||||
s = s.replace("\r\n", "\n").replace("\r", "\n").replace("\n", "<br>")
|
||||
return s
|
||||
|
||||
|
||||
def _slug(text: str) -> str:
|
||||
"""GitHub-style heading anchor: lowercase, spaces->'-', drop other symbols."""
|
||||
s = model._safe_str(text).strip().lower()
|
||||
out = []
|
||||
for ch in s:
|
||||
if ch.isalnum():
|
||||
out.append(ch)
|
||||
elif ch in " -":
|
||||
out.append("-")
|
||||
# any other symbol is dropped.
|
||||
slug = "".join(out)
|
||||
while "--" in slug:
|
||||
slug = slug.replace("--", "-")
|
||||
return slug.strip("-")
|
||||
|
||||
|
||||
def _fmt_num(v) -> str:
|
||||
"""Compact number for the figure data tables (ints as ints, else 4 sig figs)."""
|
||||
try:
|
||||
f = float(v)
|
||||
except Exception: # noqa: BLE001
|
||||
return model._safe_str(v)
|
||||
if f != f: # NaN
|
||||
return "NaN"
|
||||
if f == int(f) and abs(f) < 1e15:
|
||||
return str(int(f))
|
||||
return f"{f:.4g}"
|
||||
|
||||
|
||||
def _fmt_int(v) -> str:
|
||||
try:
|
||||
return str(int(v))
|
||||
except Exception: # noqa: BLE001
|
||||
return model._safe_str(v)
|
||||
|
||||
|
||||
def _now_iso() -> str:
|
||||
from datetime import datetime, timezone
|
||||
return datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S UTC")
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Document header (title + metadata blockquote + numbered index).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _meta_block(meta: dict) -> list:
|
||||
"""Build the metadata lines for the header blockquote (omitting absentees)."""
|
||||
ctx = meta.get("ctx") if isinstance(meta.get("ctx"), dict) else {}
|
||||
lines: list = []
|
||||
|
||||
def add(label, value) -> None:
|
||||
if value is None:
|
||||
return
|
||||
s = model._safe_str(value).strip()
|
||||
if s and s.lower() != "none":
|
||||
lines.append(f"**{label}:** {s}")
|
||||
|
||||
add("Dataset", ctx.get("dataset_name") or meta.get("dataset_name"))
|
||||
add("Fuente", ctx.get("source_origin") or meta.get("source_origin"))
|
||||
add("Almacenamiento", ctx.get("storage") or meta.get("storage"))
|
||||
n_rows = ctx.get("n_rows", meta.get("n_rows"))
|
||||
n_cols = ctx.get("n_cols", meta.get("n_cols"))
|
||||
if n_rows is not None and n_cols is not None:
|
||||
lines.append(
|
||||
f"**Dimensiones:** {_fmt_int(n_rows)} filas × {_fmt_int(n_cols)} columnas")
|
||||
add("Generado", meta.get("generated_at") or _now_iso())
|
||||
lines.append(f"**Motor:** {model.ENGINE_NAME} v{model.ENGINE_VERSION}")
|
||||
return lines
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Per-block serializers. Each returns a Markdown string (no surrounding blanks;
|
||||
# the caller separates blocks with a blank line).
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _md_heading(block) -> str:
|
||||
level = int(getattr(block, "level", 1) or 1)
|
||||
hashes = "#" * min(level + 2, 6) # level1 -> ###; '#'/'##' reserved for doc/chapter.
|
||||
text = _clean_terms(getattr(block, "text", "")).strip()
|
||||
return f"{hashes} {text}"
|
||||
|
||||
|
||||
def _md_markdown(block) -> str:
|
||||
# Keep the text verbatim, dropping only glossary markers (keep **bold**).
|
||||
return _clean_terms(getattr(block, "text", "")).rstrip("\n")
|
||||
|
||||
|
||||
def _md_kv_table(block) -> str:
|
||||
lines: list = []
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
lines.append(f"**{_clean_terms(title).strip()}**")
|
||||
lines.append("")
|
||||
lines.append("| Campo | Valor |")
|
||||
lines.append("| --- | --- |")
|
||||
for row in (getattr(block, "rows", []) or []):
|
||||
try:
|
||||
label, value = row[0], row[1]
|
||||
except Exception: # noqa: BLE001
|
||||
label, value = row, ""
|
||||
lines.append(f"| {_cell(label)} | {_cell(value)} |")
|
||||
return "\n".join(lines)
|
||||
|
||||
|
||||
def _md_data_table(block) -> str:
|
||||
lines: list = []
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
lines.append(f"**{_clean_terms(title).strip()}**")
|
||||
lines.append("")
|
||||
header = list(getattr(block, "header", []) or [])
|
||||
rows = list(getattr(block, "rows", []) or [])
|
||||
if not header:
|
||||
ncol = max((len(r) for r in rows), default=1)
|
||||
header = [f"col{i + 1}" for i in range(ncol)]
|
||||
ncol = len(header)
|
||||
lines.append("| " + " | ".join(_cell(h) for h in header) + " |")
|
||||
lines.append("| " + " | ".join(["---"] * ncol) + " |")
|
||||
for r in rows: # dump every row — no pagination, nothing cut.
|
||||
cells = [_cell(r[c]) if c < len(r) else "" for c in range(ncol)]
|
||||
lines.append("| " + " | ".join(cells) + " |")
|
||||
note = getattr(block, "note", None)
|
||||
if note:
|
||||
lines.append("")
|
||||
lines.append(f"*{_clean_terms(note).strip()}*")
|
||||
return "\n".join(lines)
|
||||
|
||||
|
||||
def _bars_table(bars: list, header: tuple = ("Desde", "Hasta", "Frecuencia")) -> str:
|
||||
"""Render extracted bar/histogram data as a Markdown table.
|
||||
|
||||
``header`` is the 3-column header to use. Histogram bars are
|
||||
``(Desde, Hasta, Frecuencia)``; bar/scree charts (means by group, PCA
|
||||
explained variance) are *not* bins, so the caller passes a semantically
|
||||
correct header (e.g. ``(Inicio, Fin, Valor)``) to avoid the misleading
|
||||
"Frecuencia" label — see report 2053, loss #6.
|
||||
"""
|
||||
h0, h1, h2 = header
|
||||
lines = [f"| {h0} | {h1} | {h2} |", "| --- | --- | --- |"]
|
||||
shown = bars[:_MAX_BAR_ROWS]
|
||||
for x0, x1, h in shown:
|
||||
lines.append(f"| {_fmt_num(x0)} | {_fmt_num(x1)} | {_fmt_num(h)} |")
|
||||
out = "\n".join(lines)
|
||||
extra = len(bars) - len(shown)
|
||||
if extra > 0:
|
||||
out += f"\n\n*… ({extra} filas más)*"
|
||||
return out
|
||||
|
||||
|
||||
def _is_histogram_caption(caption: str) -> bool:
|
||||
"""True when a figure caption describes a histogram (genuine numeric bins).
|
||||
|
||||
Histograms are the only figures whose bars are real ``[Desde, Hasta)`` bins
|
||||
with a frequency count. Bar charts (means by group) and the PCA scree plot
|
||||
carry per-category / per-component values, not bins — they must not inherit
|
||||
the ``Desde/Hasta/Frecuencia`` header.
|
||||
"""
|
||||
c = (caption or "").lower()
|
||||
return "histograma" in c or "distribución" in c or "distribucion" in c
|
||||
|
||||
|
||||
def _extract_bars(fig) -> list:
|
||||
"""Collect (x_from, x_to, height) of the rectangular bars of a matplotlib fig.
|
||||
|
||||
Histogram / bar-chart bars are ``matplotlib.patches.Rectangle`` with positive
|
||||
width and height; spines, legends and zero-area artists are skipped. Never
|
||||
raises — returns ``[]`` on any problem.
|
||||
"""
|
||||
bars: list = []
|
||||
try:
|
||||
for ax in fig.get_axes():
|
||||
# Collect this axes' positive-area rectangles, then keep only the ones
|
||||
# that look like actual histogram/bar bins. Reference shapes that
|
||||
# matplotlib also stores in ``ax.patches`` — most notably the ``±1σ``
|
||||
# band drawn by ``axvspan`` (a single rectangle far wider than a bin)
|
||||
# and a lone Tukey boxplot box — would otherwise show up as fake
|
||||
# "bins". A histogram axes has several near-equal-width bars, so we
|
||||
# drop any rectangle whose width is more than twice the median width
|
||||
# of that axes' rectangles (the σ-band spans many bins; uniform bins
|
||||
# all sit at the median width and stay).
|
||||
ax_bars: list = []
|
||||
for patch in list(getattr(ax, "patches", []) or []):
|
||||
try:
|
||||
w = patch.get_width()
|
||||
h = patch.get_height()
|
||||
x = patch.get_x()
|
||||
except Exception: # noqa: BLE001 — not a Rectangle-like patch.
|
||||
continue
|
||||
if w and w > 0 and h and h > 0:
|
||||
ax_bars.append((x, x + w, h))
|
||||
if len(ax_bars) >= 3:
|
||||
widths = sorted(b[1] - b[0] for b in ax_bars)
|
||||
median_w = widths[len(widths) // 2]
|
||||
if median_w > 0:
|
||||
ax_bars = [b for b in ax_bars
|
||||
if (b[1] - b[0]) <= 2.0 * median_w]
|
||||
bars.extend(ax_bars)
|
||||
except Exception: # noqa: BLE001
|
||||
return []
|
||||
return bars
|
||||
|
||||
|
||||
def _md_figure(block, meta: dict, out_path: str, counter: list) -> str:
|
||||
"""Serialize a Figure prioritising TEXT + DATA (an LLM cannot see the image).
|
||||
|
||||
Emits the caption, then — if the matplotlib figure has bars — a Markdown table
|
||||
of the underlying (Desde, Hasta, Frecuencia) values. Optionally (when
|
||||
``meta['embed_figures']`` is True) also exports a PNG beside the .md and adds
|
||||
an image link; off by default so the Markdown stays self-contained.
|
||||
"""
|
||||
caption = model._safe_str(getattr(block, "caption", "")).strip()
|
||||
parts = [f"*Figura: {caption}*" if caption else "*Figura*"]
|
||||
fig = None
|
||||
try:
|
||||
import matplotlib
|
||||
matplotlib.use("Agg") # defensive: headless rasterization backend.
|
||||
fig = getattr(block, "fig", None)
|
||||
make = getattr(block, "make", None)
|
||||
if fig is None and callable(make):
|
||||
fig = make()
|
||||
if fig is not None:
|
||||
bars = _extract_bars(fig)
|
||||
if bars:
|
||||
# A histogram's bars are genuine numeric bins (Desde/Hasta/
|
||||
# Frecuencia). Bar charts and the PCA scree plot are not bins —
|
||||
# give them a header that does not lie about "Frecuencia".
|
||||
header = (("Desde", "Hasta", "Frecuencia")
|
||||
if _is_histogram_caption(caption)
|
||||
else ("Inicio", "Fin", "Valor"))
|
||||
parts.append(_bars_table(bars, header))
|
||||
if meta.get("embed_figures"):
|
||||
png = _embed_png(fig, out_path, counter)
|
||||
if png:
|
||||
parts.append(f"")
|
||||
except Exception: # noqa: BLE001 — a bad figure degrades to just its caption.
|
||||
pass
|
||||
finally:
|
||||
if fig is not None:
|
||||
try:
|
||||
import matplotlib.pyplot as plt
|
||||
plt.close(fig)
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
return "\n\n".join(parts)
|
||||
|
||||
|
||||
def _embed_png(fig, out_path: str, counter: list) -> str:
|
||||
"""Export the figure to ``<basename>_figN.png`` beside the .md; return its name."""
|
||||
try:
|
||||
counter[0] += 1
|
||||
base = os.path.splitext(os.path.basename(out_path))[0] or "figura"
|
||||
name = f"{base}_fig{counter[0]}.png"
|
||||
path = os.path.join(os.path.dirname(os.path.abspath(out_path)), name)
|
||||
fig.savefig(path, format="png", dpi=120, bbox_inches="tight")
|
||||
return name
|
||||
except Exception: # noqa: BLE001
|
||||
return ""
|
||||
|
||||
|
||||
def _md_image(block) -> str:
|
||||
path = model._safe_str(getattr(block, "path", ""))
|
||||
caption = model._safe_str(getattr(block, "caption", "")).strip()
|
||||
out = f""
|
||||
if caption:
|
||||
out += f"\n\n*{caption}*"
|
||||
return out
|
||||
|
||||
|
||||
def _md_caption(block) -> str:
|
||||
return f"*{_clean_terms(getattr(block, 'text', '')).strip()}*"
|
||||
|
||||
|
||||
def _md_note(block) -> str:
|
||||
text = _clean_terms(getattr(block, "text", "")).strip()
|
||||
lines = text.split("\n")
|
||||
return "\n".join((f"> {ln}" if ln.strip() else ">") for ln in lines)
|
||||
|
||||
|
||||
def _md_group(block, meta: dict, out_path: str, counter: list) -> str:
|
||||
parts: list = []
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
parts.append(f"### {_clean_terms(title).strip()}")
|
||||
for b in (getattr(block, "blocks", []) or []):
|
||||
try:
|
||||
seg = _serialize_block(b, meta, out_path, counter)
|
||||
except Exception: # noqa: BLE001
|
||||
seg = ""
|
||||
if seg:
|
||||
parts.append(seg)
|
||||
return "\n\n".join(parts)
|
||||
|
||||
|
||||
def _md_glossary_entry(block) -> str:
|
||||
label = (model._safe_str(getattr(block, "label", "")).strip()
|
||||
or model._safe_str(getattr(block, "key", "")).strip())
|
||||
definition = _clean_terms(getattr(block, "definition", "")).strip()
|
||||
out = f"### {label}"
|
||||
if definition:
|
||||
out += f"\n\n{definition}"
|
||||
return out
|
||||
|
||||
|
||||
def _serialize_block(block, meta: dict, out_path: str, counter: list) -> str:
|
||||
"""Dispatch a single block to its Markdown serializer. Unknown -> note."""
|
||||
kind = getattr(block, "kind", "")
|
||||
if kind == "heading":
|
||||
return _md_heading(block)
|
||||
if kind == "markdown":
|
||||
return _md_markdown(block)
|
||||
if kind == "kv_table":
|
||||
return _md_kv_table(block)
|
||||
if kind == "data_table":
|
||||
return _md_data_table(block)
|
||||
if kind == "figure":
|
||||
return _md_figure(block, meta, out_path, counter)
|
||||
if kind == "image":
|
||||
return _md_image(block)
|
||||
if kind == "caption":
|
||||
return _md_caption(block)
|
||||
if kind == "note":
|
||||
return _md_note(block)
|
||||
if kind == "group":
|
||||
return _md_group(block, meta, out_path, counter)
|
||||
if kind == "glossary_entry":
|
||||
return _md_glossary_entry(block)
|
||||
# Unknown content -> readable note (mirrors the model's defensive coercion).
|
||||
return _md_note(model.Note(text=model._safe_str(block)))
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Profile appendix — the data the human-facing chapters drop.
|
||||
#
|
||||
# The chapter document (shared with the PDF/PPTX renderers) is designed for human
|
||||
# reading and intentionally omits raw numbers: the correlation matrix shows only
|
||||
# the top extremes, the numeric blocks skip skew/kurtosis/extended percentiles,
|
||||
# the model chapter does not list ``scores_by_k`` or the normality test
|
||||
# statistics. But the Markdown is meant to be *pasted into an LLM*, so it should
|
||||
# carry EVERYTHING the engine computed. This appendix serializes the full
|
||||
# ``profile`` (passed via ``meta['profile']``) as Markdown tables, additively:
|
||||
# the PDF/PPTX are untouched, the .md simply has more than they do. Each section
|
||||
# is emitted only when its source data is present, so a ``lite`` profile (no
|
||||
# models) or a profile without correlations degrades cleanly instead of raising.
|
||||
# See report 2053 for the six losses this closes.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _pair_types(a_type, b_type) -> str:
|
||||
"""Short ``num↔cat`` label for an association pair's variable types."""
|
||||
def short(t):
|
||||
t = model._safe_str(t).lower()
|
||||
if t.startswith("num"):
|
||||
return "num"
|
||||
if t.startswith("cat"):
|
||||
return "cat"
|
||||
return t or "?"
|
||||
return f"{short(a_type)}↔{short(b_type)}"
|
||||
|
||||
|
||||
def _app_correlations(corr: dict) -> str:
|
||||
"""Loss #1 — every association pair (not just the top extremes).
|
||||
|
||||
Dumps all of ``correlations['pairs']`` as a table (pair · types · method ·
|
||||
value · p · p-FDR · significant), ordered by |value| desc so the strongest
|
||||
associations lead while nothing is cut. Includes the ``correlation_ratio``
|
||||
(num↔cat) and ``cramers_v`` (cat↔cat) pairs the human chapter never shows.
|
||||
"""
|
||||
pairs = list(corr.get("pairs", []) or [])
|
||||
if not pairs:
|
||||
return ""
|
||||
def keyfn(p):
|
||||
try:
|
||||
return -abs(float(p.get("value")))
|
||||
except Exception: # noqa: BLE001
|
||||
return 0.0
|
||||
pairs_sorted = sorted(pairs, key=keyfn)
|
||||
lines = ["### Matriz de asociación — todos los pares",
|
||||
"",
|
||||
("| Par | Tipos | Método | Valor | p-value | p-ajustado (FDR) "
|
||||
"| ¿Sig? |"),
|
||||
"| --- | --- | --- | --- | --- | --- | --- |"]
|
||||
for p in pairs_sorted:
|
||||
par = f"{_cell(p.get('a'))} ↔ {_cell(p.get('b'))}"
|
||||
types = _pair_types(p.get("a_type"), p.get("b_type"))
|
||||
method = _cell(p.get("method"))
|
||||
val = _fmt_num(p.get("value"))
|
||||
pv = _fmt_num(p.get("p_value")) if p.get("p_value") is not None else ""
|
||||
padj = (_fmt_num(p.get("p_value_adjusted"))
|
||||
if p.get("p_value_adjusted") is not None else "")
|
||||
sig = "sí" if p.get("significant") else "no"
|
||||
lines.append(
|
||||
f"| {par} | {types} | {method} | {val} | {pv} | {padj} | {sig} |")
|
||||
mt = corr.get("multiple_testing") or {}
|
||||
n_tests = mt.get("n_tests", corr.get("n_tests"))
|
||||
n_rej = mt.get("n_rejected")
|
||||
note_bits = [f"{len(pairs)} pares en total"]
|
||||
if n_tests is not None and n_rej is not None:
|
||||
note_bits.append(
|
||||
f"{n_rej} de {n_tests} significativos tras corrección "
|
||||
f"{model._safe_str(mt.get('method', 'FDR')).upper()}")
|
||||
lines.append("")
|
||||
lines.append(f"*{'; '.join(note_bits)}.*")
|
||||
return "\n".join(lines)
|
||||
|
||||
|
||||
# Numeric statistics, in serialization order: (profile key, column header).
|
||||
_NUM_STATS = [
|
||||
("count", "n"), ("mean", "mean"), ("median", "median"), ("mode", "mode"),
|
||||
("std", "std"), ("variance", "variance"), ("cv", "cv"),
|
||||
("skew", "skew"), ("kurtosis", "kurtosis"),
|
||||
("min", "min"), ("p1", "p1"), ("p5", "p5"), ("p25", "p25"), ("p50", "p50"),
|
||||
("p75", "p75"), ("p95", "p95"), ("p99", "p99"), ("iqr", "iqr"),
|
||||
("max", "max"), ("n_outliers", "outliers"),
|
||||
("distribution_type", "distribución"),
|
||||
]
|
||||
|
||||
|
||||
def _app_numeric_describe(columns: list) -> str:
|
||||
"""Loss #2 — every numeric statistic for every numeric column.
|
||||
|
||||
One row per numeric column with the full describe: mean/median/mode/std/
|
||||
variance/cv, skew & kurtosis (for ALL columns, not only the skewed ones),
|
||||
p1/p5/p25/p50/p75/p95/p99, iqr, min/max, outliers and distribution_type.
|
||||
"""
|
||||
rows = []
|
||||
for info in (columns or []):
|
||||
num = info.get("numeric") if isinstance(info, dict) else None
|
||||
if not num:
|
||||
continue
|
||||
name = _cell(info.get("name"))
|
||||
cells = [name]
|
||||
for key, _hdr in _NUM_STATS:
|
||||
v = num.get("count" if key == "count" else key)
|
||||
if key == "count":
|
||||
v = num.get("count", info.get("count"))
|
||||
if key == "distribution_type":
|
||||
cells.append(_cell(v))
|
||||
else:
|
||||
cells.append(_fmt_num(v) if v is not None else "")
|
||||
rows.append(cells)
|
||||
if not rows:
|
||||
return ""
|
||||
header = ["Columna"] + [hdr for _k, hdr in _NUM_STATS]
|
||||
lines = ["### Estadísticos numéricos completos (describe)",
|
||||
"",
|
||||
"| " + " | ".join(header) + " |",
|
||||
"| " + " | ".join(["---"] * len(header)) + " |"]
|
||||
for cells in rows:
|
||||
lines.append("| " + " | ".join(cells) + " |")
|
||||
return "\n".join(lines)
|
||||
|
||||
|
||||
def _app_reexpression(columns: list) -> str:
|
||||
"""Loss #3 — the concrete recommended re-expression per column.
|
||||
|
||||
Names the transform (log1p/sqrt/yeo-johnson/none) instead of a vague
|
||||
"consider re-expressing", with the ladder power, reason and alternatives.
|
||||
"""
|
||||
rows = []
|
||||
for info in (columns or []):
|
||||
rx = info.get("reexpression") if isinstance(info, dict) else None
|
||||
if not rx or not isinstance(rx, dict):
|
||||
continue
|
||||
rec = model._safe_str(rx.get("recommended")).strip()
|
||||
if not rec:
|
||||
continue
|
||||
alts = rx.get("alternatives") or []
|
||||
alt_txt = ", ".join(
|
||||
model._safe_str(a.get("transform")) for a in alts
|
||||
if isinstance(a, dict) and a.get("transform")) or "—"
|
||||
rows.append([
|
||||
_cell(info.get("name")), _cell(rec),
|
||||
_fmt_num(rx.get("ladder_power")) if rx.get("ladder_power") is not None else "",
|
||||
_cell(rx.get("reason")), _cell(alt_txt),
|
||||
])
|
||||
if not rows:
|
||||
return ""
|
||||
lines = ["### Re-expresión recomendada (escalera de Tukey)",
|
||||
"",
|
||||
"| Columna | Recomendada | Potencia | Razón | Alternativas |",
|
||||
"| --- | --- | --- | --- | --- |"]
|
||||
for r in rows:
|
||||
lines.append("| " + " | ".join(r) + " |")
|
||||
return "\n".join(lines)
|
||||
|
||||
|
||||
def _app_kmeans_scores(kmeans: dict) -> str:
|
||||
"""Loss #4 — KMeans silhouette + inertia per k (justifies the chosen k)."""
|
||||
scores = list(kmeans.get("scores_by_k", []) or [])
|
||||
if not scores:
|
||||
return ""
|
||||
best_k = kmeans.get("best_k")
|
||||
lines = ["#### KMeans — selección de k (`scores_by_k`)",
|
||||
"",
|
||||
"| k | Silhouette | Inercia | Elegido |",
|
||||
"| --- | --- | --- | --- |"]
|
||||
for s in scores:
|
||||
if not isinstance(s, dict):
|
||||
continue
|
||||
k = s.get("k")
|
||||
chosen = "✓" if best_k is not None and k == best_k else ""
|
||||
lines.append(
|
||||
f"| {_fmt_num(k)} | {_fmt_num(s.get('silhouette'))} "
|
||||
f"| {_fmt_num(s.get('inertia'))} | {chosen} |")
|
||||
return "\n".join(lines)
|
||||
|
||||
|
||||
def _app_normality(normality: dict) -> str:
|
||||
"""Loss #5 — each normality test's statistic next to its p-value."""
|
||||
if not isinstance(normality, dict) or not normality:
|
||||
return ""
|
||||
lines = ["#### Tests de normalidad (estadístico + p-value)",
|
||||
"",
|
||||
("| Columna | n | JB stat | JB p | D'Agostino stat | D'Agostino p "
|
||||
"| Shapiro stat | Shapiro p | ¿Normal? |"),
|
||||
"| --- | --- | --- | --- | --- | --- | --- | --- | --- |"]
|
||||
any_row = False
|
||||
for col, res in normality.items():
|
||||
if not isinstance(res, dict):
|
||||
continue
|
||||
jb = res.get("jarque_bera") or {}
|
||||
da = res.get("dagostino") or {}
|
||||
sh = res.get("shapiro") or {}
|
||||
is_norm = "sí" if res.get("is_normal") else "no"
|
||||
lines.append(
|
||||
f"| {_cell(col)} | {_fmt_num(res.get('n')) if res.get('n') is not None else ''} "
|
||||
f"| {_fmt_num(jb.get('stat'))} | {_fmt_num(jb.get('p'))} "
|
||||
f"| {_fmt_num(da.get('stat'))} | {_fmt_num(da.get('p'))} "
|
||||
f"| {_fmt_num(sh.get('stat'))} | {_fmt_num(sh.get('p'))} | {is_norm} |")
|
||||
any_row = True
|
||||
return "\n".join(lines) if any_row else ""
|
||||
|
||||
|
||||
def _profile_appendix(profile: dict) -> str:
|
||||
"""Build the full-data appendix from a TableProfile dict (additive).
|
||||
|
||||
Returns a Markdown ``## Apéndice`` section with one sub-table per loss the
|
||||
human chapters drop, or ``""`` when the profile carries none of them. Never
|
||||
raises: a missing/oddly-shaped section is skipped, not fatal.
|
||||
"""
|
||||
if not isinstance(profile, dict):
|
||||
return ""
|
||||
sections: list = []
|
||||
try:
|
||||
corr = profile.get("correlations") or {}
|
||||
seg = _app_correlations(corr) if isinstance(corr, dict) else ""
|
||||
if seg:
|
||||
sections.append(seg)
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
try:
|
||||
columns = profile.get("columns") or []
|
||||
seg = _app_numeric_describe(columns)
|
||||
if seg:
|
||||
sections.append(seg)
|
||||
seg = _app_reexpression(columns)
|
||||
if seg:
|
||||
sections.append(seg)
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
try:
|
||||
models = profile.get("models") or {}
|
||||
if isinstance(models, dict):
|
||||
model_segs = []
|
||||
seg = _app_kmeans_scores(models.get("kmeans") or {})
|
||||
if seg:
|
||||
model_segs.append(seg)
|
||||
seg = _app_normality(models.get("normality") or {})
|
||||
if seg:
|
||||
model_segs.append(seg)
|
||||
if model_segs:
|
||||
sections.append(
|
||||
"### Modelos — detalle\n\n" + "\n\n".join(model_segs))
|
||||
except Exception: # noqa: BLE001
|
||||
pass
|
||||
if not sections:
|
||||
return ""
|
||||
intro = ("Volcado completo de los datos que el motor computó y que los "
|
||||
"capítulos (pensados para lectura humana / PDF) resumen. "
|
||||
"Pensado para que un LLM reconstruya el análisis entero.")
|
||||
return ("## Apéndice — Datos completos del perfil\n\n"
|
||||
f"*{intro}*\n\n" + "\n\n".join(sections))
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Entry point.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def render_md(chapters: list, out_path: str, meta: dict = None) -> dict:
|
||||
"""Serialize a list of Chapters into a single self-contained Markdown file.
|
||||
|
||||
The output leads with ``# <title>``, a metadata blockquote and a numbered
|
||||
``## Índice`` linking each chapter, then one ``## N. <title>`` section per
|
||||
chapter with its blocks. Tables become Markdown tables (every row dumped),
|
||||
figures become caption + underlying data table, glossary markers are stripped
|
||||
while ``**bold**`` is kept. Designed to be pasted into an LLM.
|
||||
|
||||
Args:
|
||||
chapters: a list of ``Chapter`` (dataclasses or dicts); normalized
|
||||
defensively with ``model.as_chapters``.
|
||||
out_path: filesystem path for the ``.md`` (parent dirs are created).
|
||||
meta: optional dict. Recognised keys: ``title``, ``ctx`` (dict with
|
||||
``dataset_name``/``source_origin``/``storage``/``n_rows``/``n_cols``),
|
||||
``generated_at``, ``embed_figures`` (export PNGs beside the .md,
|
||||
default False).
|
||||
|
||||
Returns:
|
||||
dict (never raises): ``{path: str|None, n_chars: int,
|
||||
chapters: list[{id, version}], note: str}``. On a fatal error ``path`` is
|
||||
None and ``note`` explains why.
|
||||
"""
|
||||
meta = meta or {}
|
||||
chapters = model.as_chapters(chapters)
|
||||
title = model._safe_str(meta.get("title")) or model.ENGINE_NAME
|
||||
|
||||
# Edge: nothing to render -> a minimal but valid Markdown document.
|
||||
if not chapters:
|
||||
content = (f"# {title}\n\n"
|
||||
"*(documento vacío — sin capítulos aplicables)*\n")
|
||||
return _write(out_path, content, [], "documento vacío")
|
||||
|
||||
counter = [0] # document-wide figure counter for unique PNG names.
|
||||
notes: list = []
|
||||
segments: list = [f"# {title}"]
|
||||
|
||||
meta_lines = _meta_block(meta)
|
||||
if meta_lines:
|
||||
segments.append("\n".join(f"> {ln}" for ln in meta_lines))
|
||||
|
||||
# Numbered index. The anchor matches the chapter heading emitted below
|
||||
# (``## N. <title>``) in GitHub slug style.
|
||||
chap_heads = []
|
||||
idx_lines = ["## Índice"]
|
||||
for i, ch in enumerate(chapters, 1):
|
||||
head_text = f"{i}. {model._safe_str(ch.title)}"
|
||||
anchor = _slug(head_text)
|
||||
chap_heads.append((head_text, anchor))
|
||||
idx_lines.append(f"{i}. [{model._safe_str(ch.title)}](#{anchor})")
|
||||
segments.append("\n".join(idx_lines))
|
||||
|
||||
chapters_meta = []
|
||||
for i, ch in enumerate(chapters, 1):
|
||||
segments.append("---")
|
||||
head_text, _anchor = chap_heads[i - 1]
|
||||
segments.append(f"## {head_text}")
|
||||
|
||||
blocks = list(ch.blocks or [])
|
||||
# Omit a leading level-1 Heading that just repeats the chapter title.
|
||||
if blocks:
|
||||
b0 = blocks[0]
|
||||
if (getattr(b0, "kind", "") == "heading"
|
||||
and int(getattr(b0, "level", 1) or 1) == 1
|
||||
and _clean_terms(getattr(b0, "text", "")).strip()
|
||||
== model._safe_str(ch.title).strip()):
|
||||
blocks = blocks[1:]
|
||||
|
||||
for block in blocks:
|
||||
try:
|
||||
seg = _serialize_block(block, meta, out_path, counter)
|
||||
except Exception as e: # noqa: BLE001
|
||||
seg = _md_note(model.Note(text=model._safe_str(block)))
|
||||
notes.append(
|
||||
f"bloque '{getattr(block, 'kind', '?')}' del capítulo "
|
||||
f"'{ch.id}' degradado: {e}")
|
||||
if seg:
|
||||
segments.append(seg)
|
||||
chapters_meta.append({"id": ch.id, "version": ch.version})
|
||||
|
||||
# Full-data appendix: dump everything the profile holds that the human
|
||||
# chapters drop (additive — the .md ends up with more than the PDF/PPTX).
|
||||
# Emitted only when a profile is supplied via meta['profile']; never fatal.
|
||||
try:
|
||||
appendix = _profile_appendix(meta.get("profile"))
|
||||
except Exception as e: # noqa: BLE001
|
||||
appendix = ""
|
||||
notes.append(f"apéndice de perfil omitido: {e}")
|
||||
if appendix:
|
||||
segments.append("---")
|
||||
segments.append(appendix)
|
||||
|
||||
content = "\n\n".join(segments) + "\n"
|
||||
note = f"{len(content)} caracteres"
|
||||
if notes:
|
||||
note += " · " + "; ".join(notes)
|
||||
return _write(out_path, content, chapters_meta, note)
|
||||
|
||||
|
||||
def _write(out_path: str, content: str, chapters_meta: list, note: str) -> dict:
|
||||
"""Write the Markdown to disk (creating parents). dict-no-throw."""
|
||||
try:
|
||||
parent = os.path.dirname(os.path.abspath(out_path))
|
||||
os.makedirs(parent, exist_ok=True)
|
||||
with open(out_path, "w", encoding="utf-8") as fh:
|
||||
fh.write(content)
|
||||
except Exception as e: # noqa: BLE001 — never raise from the writer.
|
||||
return {"path": None, "n_chars": 0, "chapters": [],
|
||||
"note": f"no se pudo escribir el Markdown: {e}"}
|
||||
return {"path": out_path, "n_chars": len(content),
|
||||
"chapters": chapters_meta, "note": note}
|
||||
@@ -675,6 +675,61 @@ def _measure_figure_like(block) -> float:
|
||||
return target_h + 0.04 + cap_h + _GAP
|
||||
|
||||
|
||||
def _measure_kv_table(block) -> float:
|
||||
"""Faithful height of a KVTable — matches ``_place_kv_table``.
|
||||
|
||||
Counts the optional title heading and, per row, the wrapped VALUE column
|
||||
(the label column never wraps in the placer). The previous estimate assumed
|
||||
one line per row and ignored the title, so a column's keep-together Group
|
||||
under-budgeted the figure and the chart spilled to the next page. Keep this in
|
||||
sync with ``_place_kv_table``."""
|
||||
h = 0.0
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
h += _measure_heading_text(title, 2)
|
||||
rows = getattr(block, "rows", []) or []
|
||||
key_w = 1.9
|
||||
val_chars = tl.chars_per_line(_USABLE_W - key_w - 0.1, _FS_BODY)
|
||||
lh = tl.line_height_in(_FS_BODY)
|
||||
for row in rows:
|
||||
try:
|
||||
value = row[1]
|
||||
except Exception: # noqa: BLE001
|
||||
value = ""
|
||||
v_lines = tl.wrap(model._safe_str(value), val_chars)
|
||||
h += lh * len(v_lines) + _ROW_VPAD
|
||||
return h + _GAP
|
||||
|
||||
|
||||
def _measure_data_table(block) -> float:
|
||||
"""Faithful height of a DataTable — matches ``_place_data_table``.
|
||||
|
||||
Counts the optional title heading, the wrapped header row, every wrapped data
|
||||
row (per-column wrap via the same ``_col_widths``/``_wrap_row`` the placer
|
||||
uses) and the optional note. Keep this in sync with ``_place_data_table``."""
|
||||
h = 0.0
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
h += _measure_heading_text(title, 2)
|
||||
header = list(getattr(block, "header", []) or [])
|
||||
rows = list(getattr(block, "rows", []) or [])
|
||||
fs = _FS_CELL
|
||||
widths = _col_widths(header, rows, fs)
|
||||
lh = tl.line_height_in(fs)
|
||||
if header:
|
||||
header_lines = _wrap_row(header, widths, fs)
|
||||
h += lh * max((len(c) for c in header_lines), default=1) + _ROW_VPAD * 2
|
||||
for r in rows:
|
||||
cells_lines = _wrap_row(r, widths, fs)
|
||||
h += lh * max((len(c) for c in cells_lines), default=1) + _ROW_VPAD * 2
|
||||
note = getattr(block, "note", None)
|
||||
if note:
|
||||
nlines = tl.wrap(model._safe_str(note),
|
||||
tl.chars_per_line(_USABLE_W, _FS_NOTE))
|
||||
h += tl.line_height_in(_FS_NOTE) * len(nlines)
|
||||
return h + _GAP
|
||||
|
||||
|
||||
def _measure_block(st: _PdfState, block) -> float:
|
||||
kind = getattr(block, "kind", "")
|
||||
try:
|
||||
@@ -690,13 +745,9 @@ def _measure_block(st: _PdfState, block) -> float:
|
||||
tl.chars_per_line(_USABLE_W, _FS_NOTE))
|
||||
return tl.line_height_in(_FS_NOTE) * len(lines) + _GAP
|
||||
if kind == "kv_table":
|
||||
rows = getattr(block, "rows", []) or []
|
||||
return (tl.line_height_in(_FS_BODY) + _ROW_VPAD) * (len(rows) + 1) \
|
||||
+ _GAP
|
||||
return _measure_kv_table(block)
|
||||
if kind == "data_table":
|
||||
rows = getattr(block, "rows", []) or []
|
||||
return (tl.line_height_in(_FS_CELL) + _ROW_VPAD * 2) \
|
||||
* (len(rows) + 1) + _GAP
|
||||
return _measure_data_table(block)
|
||||
if kind == "group":
|
||||
return sum(_measure_block(st, b)
|
||||
for b in (getattr(block, "blocks", []) or []))
|
||||
@@ -735,6 +786,10 @@ def _place_group(st: _PdfState, block) -> None:
|
||||
blocks = getattr(block, "blocks", []) or []
|
||||
if not blocks:
|
||||
return
|
||||
# Opt-in page break: start this group on a fresh page unless the current one
|
||||
# is still empty (so a chapter can give each unit its own page).
|
||||
if getattr(block, "page_break_before", False) and st.y > _CONTENT_TOP + 1e-6:
|
||||
_new_page(st)
|
||||
avail_full = _CONTENT_BOTTOM - _CONTENT_TOP
|
||||
_shrink_group_figures(st, blocks, avail_full)
|
||||
total = sum(_measure_block(st, b) for b in blocks)
|
||||
|
||||
@@ -625,6 +625,55 @@ def _measure_figure_like(block) -> float:
|
||||
return target_h + 0.05 + cap_h + _GAP
|
||||
|
||||
|
||||
def _measure_kv_table(block) -> float:
|
||||
"""Faithful KVTable height — matches ``_place_kv_table`` (rendered as a
|
||||
Campo/Valor data table with wrapped cells). The previous estimate assumed one
|
||||
line per row and ignored the title, so a keep-together Group under-budgeted
|
||||
the figure and the chart spilled to the next slide. Keep in sync."""
|
||||
h = 0.0
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
h += _measure_heading_text(title, 2)
|
||||
rows = getattr(block, "rows", []) or []
|
||||
data_rows = []
|
||||
for row in rows:
|
||||
try:
|
||||
label, value = row[0], row[1]
|
||||
except Exception: # noqa: BLE001
|
||||
label, value = str(row), ""
|
||||
data_rows.append([model._safe_str(label), model._safe_str(value)])
|
||||
header = ["Campo", "Valor"]
|
||||
widths = _col_widths(header, data_rows)
|
||||
fs = _FS_CELL
|
||||
h += _row_height_in(header, widths, fs)
|
||||
for r in data_rows:
|
||||
h += _row_height_in(r, widths, fs)
|
||||
return h + _GAP
|
||||
|
||||
|
||||
def _measure_data_table(block) -> float:
|
||||
"""Faithful DataTable height — matches ``_place_data_table`` (title heading +
|
||||
wrapped header + every wrapped row + optional note). Keep in sync."""
|
||||
h = 0.0
|
||||
title = getattr(block, "title", None)
|
||||
if title:
|
||||
h += _measure_heading_text(title, 2)
|
||||
header = list(getattr(block, "header", []) or [])
|
||||
rows = list(getattr(block, "rows", []) or [])
|
||||
fs = _FS_CELL
|
||||
widths = _col_widths(header, rows)
|
||||
if header:
|
||||
h += _row_height_in(header, widths, fs)
|
||||
for r in rows:
|
||||
h += _row_height_in(r, widths, fs)
|
||||
note = getattr(block, "note", None)
|
||||
if note:
|
||||
nlines = tl.wrap(model._safe_str(note),
|
||||
tl.chars_per_line(_USABLE_W, _FS_NOTE))
|
||||
h += tl.line_height_in(_FS_NOTE) * len(nlines) + 0.05
|
||||
return h + _GAP
|
||||
|
||||
|
||||
def _measure_block(st: _PptxState, block) -> float:
|
||||
kind = getattr(block, "kind", "")
|
||||
try:
|
||||
@@ -639,9 +688,10 @@ def _measure_block(st: _PptxState, block) -> float:
|
||||
lines = tl.wrap(getattr(block, "text", ""),
|
||||
tl.chars_per_line(_USABLE_W, _FS_NOTE))
|
||||
return tl.line_height_in(_FS_NOTE) * len(lines) + 0.05 + _GAP
|
||||
if kind in ("kv_table", "data_table"):
|
||||
rows = getattr(block, "rows", []) or []
|
||||
return (tl.line_height_in(_FS_CELL) + 0.10) * (len(rows) + 1) + _GAP
|
||||
if kind == "kv_table":
|
||||
return _measure_kv_table(block)
|
||||
if kind == "data_table":
|
||||
return _measure_data_table(block)
|
||||
if kind == "group":
|
||||
return sum(_measure_block(st, b)
|
||||
for b in (getattr(block, "blocks", []) or []))
|
||||
@@ -664,10 +714,14 @@ def _shrink_group_figures(st: _PptxState, blocks: list, avail_full: float) -> No
|
||||
if getattr(b, "kind", "") not in ("figure", "image"))
|
||||
fig_overhead = tl.line_height_in(_FS_NOTE) + 0.05 + 0.05 + _GAP
|
||||
budget = avail_full - nonfig_h - 0.10 * len(fig_blocks)
|
||||
if budget <= 1.0:
|
||||
# Low thresholds: a 16:9 slide is short, so a content-heavy column (cardinality
|
||||
# table + top-k + chart) only fits if the chart is allowed to shrink small.
|
||||
# Prefer a small-but-present chart on the SAME slide over splitting the column
|
||||
# across slides (matches the PDF renderer's keep-together philosophy).
|
||||
if budget <= 0.6:
|
||||
return # not enough room to keep together; let it flow (degrade).
|
||||
per = budget / len(fig_blocks) - fig_overhead
|
||||
if per <= 0.8:
|
||||
if per <= 0.35:
|
||||
return
|
||||
for fb in fig_blocks:
|
||||
cur = getattr(fb, "height_in", None)
|
||||
@@ -675,12 +729,90 @@ def _shrink_group_figures(st: _PptxState, blocks: list, avail_full: float) -> No
|
||||
if isinstance(cur, (int, float)) and cur > 0 else per)
|
||||
|
||||
|
||||
# Minimum height (inches) reserved for a figure inside a keep-together group on
|
||||
# the short 16:9 slide. When a high-cardinality column's table(s) would otherwise
|
||||
# leave no room, the data table is trimmed (with an honest note) so the chart
|
||||
# stays on the SAME slide next to its table instead of spilling to the next one.
|
||||
_GROUP_MIN_FIG_H = 1.3
|
||||
|
||||
|
||||
def _trim_data_table_to_budget(block, budget: float):
|
||||
"""Return a copy of a DataTable whose rows fit within ``budget`` inches.
|
||||
|
||||
Keeps the title, header, as many leading rows as fit (at least one) and an
|
||||
honest note reporting how many of the original rows are shown. NEVER mutates
|
||||
the original block — the same Chapter blocks are rendered by the PDF renderer,
|
||||
which keeps the full table (an A5 page fits it)."""
|
||||
header = list(getattr(block, "header", []) or [])
|
||||
rows = list(getattr(block, "rows", []) or [])
|
||||
title = getattr(block, "title", None)
|
||||
fs = _FS_CELL
|
||||
widths = _col_widths(header, rows)
|
||||
fixed = 0.0
|
||||
if title:
|
||||
fixed += _measure_heading_text(title, 2)
|
||||
if header:
|
||||
fixed += _row_height_in(header, widths, fs)
|
||||
note_h = tl.line_height_in(_FS_NOTE) + 0.05
|
||||
avail_rows = budget - fixed - note_h - _GAP
|
||||
kept = []
|
||||
used = 0.0
|
||||
for r in rows:
|
||||
rh = _row_height_in(r, widths, fs)
|
||||
if used + rh > avail_rows and kept:
|
||||
break
|
||||
kept.append(r)
|
||||
used += rh
|
||||
if len(kept) >= len(rows):
|
||||
return block # already fits; keep the original (with its own note).
|
||||
note = (f"top {len(kept)} de {len(rows)} categorías mostradas "
|
||||
"(recortado para caber en el slide; el PDF muestra más)")
|
||||
return model.DataTable(header=header, rows=kept, title=title, note=note)
|
||||
|
||||
|
||||
def _fit_group_blocks(st: _PptxState, blocks: list, avail_full: float) -> list:
|
||||
"""Return a slide-fitting copy of a keep-together group's blocks.
|
||||
|
||||
On the short 16:9 slide a high-cardinality column's top-k table plus its
|
||||
chart can overflow. Reserve ``_GROUP_MIN_FIG_H`` for the (later shrunk) figure
|
||||
and trim the data table(s) to what is left, so every column keeps its chart
|
||||
next to its table on ONE slide. No-op when the group has no figure+table pair
|
||||
(e.g. id-like columns already drop the top-k upstream, or it already fits)."""
|
||||
has_fig = any(getattr(b, "kind", "") in ("figure", "image") for b in blocks)
|
||||
tbls = [b for b in blocks if getattr(b, "kind", "") == "data_table"]
|
||||
if not (has_fig and tbls):
|
||||
return blocks
|
||||
fixed_h = sum(_measure_block(st, b) for b in blocks
|
||||
if getattr(b, "kind", "") not in ("figure", "image",
|
||||
"data_table"))
|
||||
tables_h = sum(_measure_block(st, b) for b in tbls)
|
||||
budget_tables = avail_full - fixed_h - _GROUP_MIN_FIG_H
|
||||
if tables_h <= budget_tables:
|
||||
return blocks # already fits next to a min-height figure; leave intact.
|
||||
out = []
|
||||
for b in blocks:
|
||||
if getattr(b, "kind", "") != "data_table":
|
||||
out.append(b)
|
||||
continue
|
||||
trimmed = _trim_data_table_to_budget(b, max(budget_tables, 0.8))
|
||||
out.append(trimmed)
|
||||
budget_tables -= _measure_data_table(trimmed)
|
||||
return out
|
||||
|
||||
|
||||
def _place_group(st: _PptxState, block) -> None:
|
||||
"""Render a keep-together Group: move it whole to the next slide if needed."""
|
||||
blocks = getattr(block, "blocks", []) or []
|
||||
if not blocks:
|
||||
return
|
||||
# Opt-in slide break: start this group on a fresh slide unless the current one
|
||||
# is still empty (so a chapter can give each unit its own slide).
|
||||
if getattr(block, "page_break_before", False) and st.y > _CONTENT_TOP + 1e-6:
|
||||
_new_slide(st, cont=True)
|
||||
avail_full = _CONTENT_BOTTOM - _CONTENT_TOP
|
||||
# Trim oversized tables first (keeps the chart on the same slide), then shrink
|
||||
# the figure to share the remaining room.
|
||||
blocks = _fit_group_blocks(st, blocks, avail_full)
|
||||
_shrink_group_figures(st, blocks, avail_full)
|
||||
total = sum(_measure_block(st, b) for b in blocks)
|
||||
if total <= avail_full:
|
||||
|
||||
@@ -20,6 +20,10 @@ vacia y el resto del ctx se construye igual. Ante un fallo global devuelve al
|
||||
menos ``{**base_ctx, "db_path": db_path, "table": table}``.
|
||||
|
||||
Claves de DATOS que produce (las consumen los capitulos):
|
||||
- ``head_rows`` : [ {col: valor, ...}, ... ] primeras filas CRUDAS de la
|
||||
tabla (``SELECT * LIMIT head_n``), una entrada por fila.
|
||||
La lee el capitulo OVERVIEW para mostrar df.head real en
|
||||
lugar del placeholder "df.head no disponible".
|
||||
- ``raw_numeric`` : {col: [float|None, ...]} muestra cruda de las columnas
|
||||
numericas, ALINEADA POR FILA (una entrada por fila aunque
|
||||
sea None). La leen modelos (clustering 2D en vivo) y
|
||||
@@ -56,7 +60,7 @@ def _to_float(value):
|
||||
return None
|
||||
|
||||
|
||||
def build_eda_render_ctx(db_path, table, profile, backend="duckdb", sample=5000, base_ctx=None):
|
||||
def build_eda_render_ctx(db_path, table, profile, backend="duckdb", sample=5000, base_ctx=None, head_n=10):
|
||||
"""Construye el ctx de datos crudos para los renderers de AutomaticEDA.
|
||||
|
||||
Args:
|
||||
@@ -77,13 +81,15 @@ def build_eda_render_ctx(db_path, table, profile, backend="duckdb", sample=5000,
|
||||
base_ctx: dict opcional con claves de presentacion ya preparadas
|
||||
(dataset_name, source_origin, ...). Se parte de una copia y NO se
|
||||
pisan sus claves; solo se añaden las de datos. Default None -> {}.
|
||||
head_n: numero de filas crudas a muestrear para ``ctx["head_rows"]``
|
||||
(df.head del capitulo OVERVIEW). Default 10. <=0 omite la clave.
|
||||
|
||||
Returns:
|
||||
El dict ``ctx`` directamente (NO un wrapper {status,...}): se pasa tal
|
||||
cual como ``meta={"ctx": <ese dict>}`` a render_automatic_eda_pdf/pptx.
|
||||
Nunca lanza. Claves que puede contener: raw_numeric, timeseries_raw,
|
||||
geo_points (omitidas si no aplican o fallan), y siempre db_path + table
|
||||
para backends validos.
|
||||
Nunca lanza. Claves que puede contener: head_rows, raw_numeric,
|
||||
timeseries_raw, geo_points (omitidas si no aplican o fallan), y siempre
|
||||
db_path + table para backends validos.
|
||||
"""
|
||||
# Copia de base_ctx: nunca mutamos el dict del caller. Las claves de
|
||||
# presentacion que ya traiga se conservan; las de datos se añaden encima.
|
||||
@@ -117,6 +123,24 @@ def build_eda_render_ctx(db_path, table, profile, backend="duckdb", sample=5000,
|
||||
ctx["db_path"] = db_path
|
||||
ctx["table"] = table
|
||||
|
||||
# 1.5) head_rows: primeras filas CRUDAS de la tabla (SELECT * LIMIT n)
|
||||
# para que el capitulo OVERVIEW muestre df.head real en vez del
|
||||
# placeholder. Una sola query, dict-no-throw: si falla, se omite la
|
||||
# clave (el capitulo degrada a su nota honesta). No se pisa una clave
|
||||
# head_rows que ya viniera en base_ctx (presentacion).
|
||||
if head_n and int(head_n) > 0 and "head_rows" not in ctx:
|
||||
try:
|
||||
hq = query_fn(f'SELECT * FROM "{table}" LIMIT {int(head_n)}')
|
||||
if isinstance(hq, dict) and hq.get("status") == "ok":
|
||||
hrows = [
|
||||
dict(r) for r in (hq.get("rows") or [])
|
||||
if isinstance(r, dict)
|
||||
]
|
||||
if hrows:
|
||||
ctx["head_rows"] = hrows
|
||||
except Exception: # noqa: BLE001 - dict-no-throw: omitir la clave
|
||||
pass
|
||||
|
||||
# 2) Columnas del perfil agregado (lectura defensiva).
|
||||
cols = profile.get("columns") if isinstance(profile, dict) else None
|
||||
cols = cols or []
|
||||
|
||||
@@ -0,0 +1,68 @@
|
||||
---
|
||||
name: classify_relationship_type
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def classify_relationship_type(xs: list, ys: list) -> dict"
|
||||
description: "Clasifica el TIPO de relacion entre dos variables numericas pareadas por indice para el EDA automatico del grupo eda. Limpia los pares de forma defensiva (descarta None/bool/NaN/inf), reusa pearson y spearman_corr del registry y ajusta polinomios de grado 2 y 3 con numpy.polyfit (R^2 manual), y a partir de esas senales etiqueta la forma: 'lineal', 'polinomica (grado 2/3)', 'monotona no-lineal' o 'debil/sin forma'. Orden de decision: debil -> monotona -> polinomica -> lineal (la primera que matchea gana), con umbrales calibrados para datos reales discretos/ruidosos. Devuelve ademas los coeficientes del mejor modelo en orden de numpy.polyval para pintar la curva de ajuste sobre el scatter. Funcion pura no-throw: ante datos insuficientes (menos de 5 pares validos o varianza ~0) o cualquier fallo devuelve el dict canonico con tipo='debil/sin forma' y el resto a None."
|
||||
tags: [eda, correlation, relationship, classification, polyfit, datascience, pure]
|
||||
params:
|
||||
- name: xs
|
||||
desc: "Lista (o tupla) de valores numericos de la primera variable, pareada por indice con ys. Cada par xs[i],ys[i] se descarta si cualquiera de los dos es None, bool, NaN o inf. Lectura defensiva."
|
||||
- name: ys
|
||||
desc: "Lista (o tupla) de valores numericos de la segunda variable, pareada por indice con xs. Mismas reglas de limpieza que xs."
|
||||
output: "Dict con SIEMPRE las mismas 8 claves: tipo (str: 'lineal' | 'polinómica (grado 2)' | 'polinómica (grado 3)' | 'monótona no-lineal' | 'débil/sin forma'); pearson (float|None: coeficiente de Pearson r); r2_linear (float|None: r**2 del ajuste lineal); spearman (float|None: rho de Spearman); r2_poly2 (float|None: R^2 del ajuste polinomico de grado 2); r2_poly3 (float|None: R^2 del ajuste de grado 3); best_degree (int|None: grado del modelo elegido — 1 lineal, 2/3 polinomico, None si monotona/debil); coeffs (list|None: coeficientes del mejor modelo en orden de numpy.polyval para pintar la curva, o None). Ante datos insuficientes o error: tipo='débil/sin forma' y el resto de claves a None."
|
||||
uses_functions: [pearson_py_datascience, spearman_corr_py_datascience]
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: [numpy]
|
||||
tested: true
|
||||
tests: ["test_lineal", "test_polinomica_cuadratica", "test_monotona_no_lineal", "test_monotona_exponencial", "test_debil_sin_forma", "test_lista_vacia_no_lanza", "test_longitudes_distintas_no_lanza", "test_todos_none_no_lanza", "test_entradas_none_no_lanza", "test_constante_no_lanza", "test_filtra_nan_inf_bool"]
|
||||
test_file_path: "python/functions/datascience/classify_relationship_type_test.py"
|
||||
file_path: "python/functions/datascience/classify_relationship_type.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience.classify_relationship_type import classify_relationship_type
|
||||
import numpy as np
|
||||
|
||||
# Relacion claramente cuadratica (forma de parabola) sobre dominio simetrico.
|
||||
x = list(np.linspace(-10, 10, 60))
|
||||
y = [v * v for v in x]
|
||||
|
||||
res = classify_relationship_type(x, y)
|
||||
print(res["tipo"]) # 'polinómica (grado 2)'
|
||||
print(res["best_degree"]) # 2
|
||||
print(res["r2_linear"]) # 0.0 -> el Pearson lineal no ve la parabola
|
||||
print(res["r2_poly2"]) # 1.0
|
||||
print(res["coeffs"]) # [1.0, -0.0, -0.0] -> numpy.polyval(coeffs, x) ~ x**2
|
||||
|
||||
# El capitulo pinta la curva de ajuste cuando coeffs no es None:
|
||||
# if res["coeffs"] is not None:
|
||||
# xs_fit = np.linspace(min(x), max(x), 200)
|
||||
# ys_fit = np.polyval(res["coeffs"], xs_fit)
|
||||
# ax.plot(xs_fit, ys_fit) # curva sobre el ax.scatter(x, y)
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
- Usala en el capitulo de relaciones/correlaciones del EDA automatico, despues de detectar dos columnas numericas con alguna asociacion, para decidir QUE curva de ajuste pintar sobre el scatter (recta, parabola, cubica o ninguna) y poner una etiqueta legible al tipo de relacion.
|
||||
- Cuando un Pearson bajo no signifique "sin relacion": esta funcion cruza Pearson con Spearman y con ajustes polinomicos para distinguir una relacion lineal debil de una monotona no-lineal (que el rango si capta) o de una curva polinomica.
|
||||
- Cuando necesites un punto de entrada determinista y no-throw que, con los mismos datos, devuelva siempre el mismo `tipo` y los mismos `coeffs` listos para `numpy.polyval` sin tener que ajustar modelos a mano en el capitulo.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Funcion pura, deterministica y no-throw: ante menos de 5 pares validos, varianza ~0 (xs o ys constante) o cualquier excepcion interna devuelve el dict canonico `tipo="débil/sin forma"` con el resto de claves a `None`. El dict SIEMPRE trae las 8 claves: nunca compruebes existencia, comprueba `None`.
|
||||
- El orden de decision importa: `débil -> monótona -> polinómica -> lineal` (la primera que matchee gana). La monotonia se evalua ANTES que el ajuste polinomico, asi que una curva monotona suave (exp, log, potencias) sale `monótona no-lineal` aunque un cubico tambien la ajuste — la dominancia del rango (Spearman >> Pearson) es la senal mas interpretable. Solo cae en `polinómica` una forma curva NO monotona (p.ej. una parabola, Spearman ~0 pero R^2 polinomico alto).
|
||||
- Umbrales fijos (calibrados para EDA con datos discretos/ruidosos, no para inferencia formal): `débil/sin forma` si las tres senales son bajas a la vez (`abs(pearson) < 0.3` y `abs(spearman) < 0.3` y `mejor_poly < 0.3`); `monótona no-lineal` si `abs(spearman) - abs(pearson) >= 0.1` y `abs(spearman) >= 0.4`; `polinómica (grado N)` si el mejor polinomico mejora `>= 0.1` sobre el lineal y su R^2 `>= 0.3`; en cualquier otro caso con senal (no debil) `lineal`. El suelo de 0.3 evita llamar "debil" a relaciones reales pero discretas (conteos, escalas ordinales) con R^2 bajo pero direccion clara.
|
||||
- `coeffs` va en orden de `numpy.polyval` (grado descendente). Para `lineal` es `[pendiente, intercepto]` (grado 1); para `polinómica` los del grado elegido; para `monótona no-lineal` y `débil/sin forma` es `None` (el scatter pintara una curva suavizada o nada — lo decide el capitulo, no esta funcion).
|
||||
- `best_degree` prefiere el grado 2 sobre el 3 cuando empatan dentro de 0.02 de R^2 (parsimonia): no esperes grado 3 salvo que mejore claramente.
|
||||
- Los pares con `None`, `bool`, `NaN` o `inf` se descartan por indice en silencio; `bool` cuenta como no-numerico (un `True` no es `1`). El dominio de los datos afecta al resultado: una parabola sobre un dominio simetrico da Pearson ~0 (sale `polinómica`), pero sobre un dominio asimetrico el Pearson sube y puede salir `lineal`.
|
||||
@@ -0,0 +1,187 @@
|
||||
"""Clasifica el TIPO de relacion entre dos variables numericas pareadas.
|
||||
|
||||
Funcion pura del grupo eda. Dadas dos listas numericas pareadas por indice,
|
||||
limpia los pares de forma defensiva, calcula correlaciones lineal (Pearson) y de
|
||||
rangos (Spearman) y ajustes polinomicos de grado 2 y 3, y a partir de esas
|
||||
senales etiqueta la forma de la relacion para el EDA automatico:
|
||||
|
||||
"lineal" | "polinómica (grado 2)" | "polinómica (grado 3)" |
|
||||
"monótona no-lineal" | "débil/sin forma"
|
||||
|
||||
Ademas devuelve los coeficientes del mejor modelo (en orden de numpy.polyval)
|
||||
para que el capitulo pinte la curva de ajuste sobre el scatter. Reusa las
|
||||
funciones del registry `pearson` y `spearman_corr` en vez de reimplementarlas.
|
||||
|
||||
NUNCA lanza: ante cualquier fallo o dato insuficiente devuelve el dict canonico
|
||||
con tipo="débil/sin forma" y el resto de claves a None.
|
||||
"""
|
||||
|
||||
import math
|
||||
import warnings
|
||||
|
||||
import numpy as np
|
||||
|
||||
from datascience.datascience import pearson
|
||||
from datascience.spearman_corr import spearman_corr
|
||||
|
||||
# Forma canonica de la respuesta cuando no se puede clasificar (datos
|
||||
# insuficientes, varianza nula o error interno). Siempre las mismas claves.
|
||||
_WEAK = {
|
||||
"tipo": "débil/sin forma",
|
||||
"pearson": None,
|
||||
"r2_linear": None,
|
||||
"spearman": None,
|
||||
"r2_poly2": None,
|
||||
"r2_poly3": None,
|
||||
"best_degree": None,
|
||||
"coeffs": None,
|
||||
}
|
||||
|
||||
|
||||
def _is_num(v) -> bool:
|
||||
"""True si v es un numero real finito (int/float, no bool, no NaN, no inf)."""
|
||||
return (
|
||||
isinstance(v, (int, float))
|
||||
and not isinstance(v, bool)
|
||||
and not (isinstance(v, float) and (math.isnan(v) or math.isinf(v)))
|
||||
)
|
||||
|
||||
|
||||
def _poly_r2(coeffs, x_arr, y_arr, ss_tot: float) -> float:
|
||||
"""R^2 de un ajuste polinomico: 1 - SS_res/SS_tot. 0 si SS_tot==0."""
|
||||
if ss_tot == 0.0:
|
||||
return 0.0
|
||||
pred = np.polyval(coeffs, x_arr)
|
||||
ss_res = float(np.sum((y_arr - pred) ** 2))
|
||||
return 1.0 - ss_res / ss_tot
|
||||
|
||||
|
||||
def classify_relationship_type(xs: list, ys: list) -> dict:
|
||||
"""Clasifica el tipo de relacion entre dos variables numericas pareadas.
|
||||
|
||||
Empareja xs[i],ys[i] por indice y descarta el par si cualquiera de los dos
|
||||
es None, bool, NaN o inf. Sobre los pares limpios calcula Pearson r
|
||||
(r2_linear = r**2), Spearman rho y los R^2 de ajustes polinomicos de grado 2
|
||||
y 3 (con numpy.polyfit + R^2 manual). Con esas senales decide la etiqueta.
|
||||
|
||||
Orden de evaluacion de la etiqueta (la primera que matchee gana). Los
|
||||
umbrales estan calibrados para datos reales, a menudo discretos y ruidosos
|
||||
(conteos, escalas ordinales): una relacion con |r| >= 0.3, |rho| >= 0.3 o un
|
||||
polinomio con R^2 >= 0.3 ya tiene FORMA y no debe etiquetarse como "debil".
|
||||
1. "débil/sin forma" — todas las senales bajas a la vez:
|
||||
abs(pearson) < 0.3 y abs(spearman) < 0.3 y mejor_poly < 0.3.
|
||||
2. "monótona no-lineal" — el rango (Spearman) capta una monotonia que el
|
||||
Pearson lineal no: abs(spearman) - abs(pearson) >= 0.1 y
|
||||
abs(spearman) >= 0.4. No se fuerza un polinomio (coeffs/best_degree =
|
||||
None); el capitulo dibuja la tendencia ordenada sobre el scatter.
|
||||
3. "polinómica (grado N)" — el mejor polinomico mejora claramente sobre
|
||||
el lineal (mejor_poly - r2_linear >= 0.1) y mejor_poly >= 0.3. N es el
|
||||
grado (2 o 3) con mejor R^2, prefiriendo el 2 si empatan dentro de 0.02
|
||||
(parsimonia).
|
||||
4. "lineal" — el resto: hay senal (no es debil) y la forma que existe es
|
||||
esencialmente lineal. best_degree=1, coeffs del ajuste de grado 1.
|
||||
|
||||
Si hay menos de 5 pares validos, o la varianza de xs o de ys es ~0
|
||||
(constante), devuelve directamente "débil/sin forma".
|
||||
|
||||
Args:
|
||||
xs: lista (o tupla) de valores numericos de la primera variable,
|
||||
pareada por indice con ys. Pares con None/bool/NaN/inf se descartan.
|
||||
ys: lista (o tupla) de valores numericos de la segunda variable,
|
||||
pareada por indice con xs.
|
||||
|
||||
Returns:
|
||||
dict con SIEMPRE las mismas claves:
|
||||
tipo (str), pearson (float|None), r2_linear (float|None),
|
||||
spearman (float|None), r2_poly2 (float|None), r2_poly3 (float|None),
|
||||
best_degree (int|None: 1, 2, 3 o None),
|
||||
coeffs (list|None: coeficientes en orden de numpy.polyval, o None).
|
||||
Nunca lanza: ante fallo o datos insuficientes devuelve el dict debil.
|
||||
"""
|
||||
try:
|
||||
if xs is None or ys is None:
|
||||
return dict(_WEAK)
|
||||
|
||||
pairs = [
|
||||
(float(x), float(y))
|
||||
for x, y in zip(xs, ys)
|
||||
if _is_num(x) and _is_num(y)
|
||||
]
|
||||
|
||||
# Datos insuficientes para hablar de forma de la relacion.
|
||||
if len(pairs) < 5:
|
||||
return dict(_WEAK)
|
||||
|
||||
clean_x = [p[0] for p in pairs]
|
||||
clean_y = [p[1] for p in pairs]
|
||||
|
||||
# Varianza ~0 en cualquiera de las series => relacion indefinida.
|
||||
if len(set(clean_x)) < 2 or len(set(clean_y)) < 2:
|
||||
return dict(_WEAK)
|
||||
x_arr = np.asarray(clean_x, dtype=float)
|
||||
y_arr = np.asarray(clean_y, dtype=float)
|
||||
if float(np.var(x_arr)) < 1e-15 or float(np.var(y_arr)) < 1e-15:
|
||||
return dict(_WEAK)
|
||||
|
||||
# Correlaciones reutilizando las funciones del registry.
|
||||
r = pearson(clean_x, clean_y)
|
||||
spearman = spearman_corr(clean_x, clean_y)
|
||||
r2_linear = r ** 2
|
||||
|
||||
# Ajustes polinomicos grado 2 y 3 con R^2 manual.
|
||||
ss_tot = float(np.sum((y_arr - float(np.mean(y_arr))) ** 2))
|
||||
with warnings.catch_warnings():
|
||||
warnings.simplefilter("ignore")
|
||||
c1 = np.polyfit(x_arr, y_arr, 1)
|
||||
c2 = np.polyfit(x_arr, y_arr, 2)
|
||||
c3 = np.polyfit(x_arr, y_arr, 3)
|
||||
r2_poly2 = _poly_r2(c2, x_arr, y_arr, ss_tot)
|
||||
r2_poly3 = _poly_r2(c3, x_arr, y_arr, ss_tot)
|
||||
|
||||
mejor_poly = max(r2_poly2, r2_poly3)
|
||||
# Grado del mejor polinomico, con preferencia por la parsimonia: solo se
|
||||
# elige el grado 3 si supera al grado 2 por mas de 0.02.
|
||||
best_poly_degree = 3 if (r2_poly3 - r2_poly2) > 0.02 else 2
|
||||
|
||||
abs_s = abs(spearman)
|
||||
abs_p = abs(r)
|
||||
|
||||
# Decision en orden: debil-temprano -> monotona -> polinomica -> lineal.
|
||||
if abs_p < 0.3 and abs_s < 0.3 and mejor_poly < 0.3:
|
||||
# Ninguna senal supera el suelo de forma: relacion debil/sin forma.
|
||||
tipo = "débil/sin forma"
|
||||
best_degree = None
|
||||
coeffs = None
|
||||
elif (abs_s - abs_p) >= 0.1 and abs_s >= 0.4:
|
||||
# Spearman (rango) capta una monotonia que el Pearson lineal no:
|
||||
# relacion monotona no-lineal. No se fuerza un polinomio que tal vez
|
||||
# no ajusta bien; el capitulo dibuja la tendencia ordenada.
|
||||
tipo = "monótona no-lineal"
|
||||
best_degree = None
|
||||
coeffs = None
|
||||
elif (mejor_poly - r2_linear) >= 0.1 and mejor_poly >= 0.3:
|
||||
tipo = "polinómica (grado {})".format(best_poly_degree)
|
||||
best_degree = best_poly_degree
|
||||
best_coeffs = c2 if best_poly_degree == 2 else c3
|
||||
coeffs = [float(c) for c in best_coeffs]
|
||||
else:
|
||||
# Hay senal (no es debil) y no es ni monotona-pura ni polinomica:
|
||||
# la correlacion que existe es esencialmente lineal.
|
||||
tipo = "lineal"
|
||||
best_degree = 1
|
||||
coeffs = [float(c) for c in c1]
|
||||
|
||||
return {
|
||||
"tipo": tipo,
|
||||
"pearson": round(float(r), 6),
|
||||
"r2_linear": round(float(r2_linear), 6),
|
||||
"spearman": round(float(spearman), 6),
|
||||
"r2_poly2": round(float(r2_poly2), 6),
|
||||
"r2_poly3": round(float(r2_poly3), 6),
|
||||
"best_degree": best_degree,
|
||||
"coeffs": (
|
||||
[round(c, 8) for c in coeffs] if coeffs is not None else None
|
||||
),
|
||||
}
|
||||
except Exception:
|
||||
return dict(_WEAK)
|
||||
@@ -0,0 +1,174 @@
|
||||
"""Tests para classify_relationship_type."""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
import numpy as np
|
||||
|
||||
sys.path.insert(0, os.path.dirname(__file__))
|
||||
|
||||
from classify_relationship_type import classify_relationship_type
|
||||
|
||||
# Claves que el dict de salida debe contener SIEMPRE.
|
||||
_EXPECTED_KEYS = {
|
||||
"tipo", "pearson", "r2_linear", "spearman",
|
||||
"r2_poly2", "r2_poly3", "best_degree", "coeffs",
|
||||
}
|
||||
|
||||
|
||||
def _assert_shape(r):
|
||||
"""Toda salida tiene exactamente las 8 claves canonicas."""
|
||||
assert isinstance(r, dict)
|
||||
assert set(r.keys()) == _EXPECTED_KEYS
|
||||
|
||||
|
||||
def test_lineal():
|
||||
"""Golden: y = 2x + 1 con ruido pequeno -> 'lineal', best_degree=1."""
|
||||
rng = np.random.default_rng(42)
|
||||
x = np.linspace(0.0, 10.0, 50)
|
||||
y = 2.0 * x + 1.0 + rng.normal(0.0, 0.3, 50)
|
||||
|
||||
r = classify_relationship_type(list(x), list(y))
|
||||
_assert_shape(r)
|
||||
|
||||
assert r["tipo"] == "lineal"
|
||||
assert r["best_degree"] == 1
|
||||
assert r["r2_linear"] >= 0.5
|
||||
# coeffs ~ [pendiente, intercepto] del ajuste de grado 1.
|
||||
assert r["coeffs"] is not None and len(r["coeffs"]) == 2
|
||||
assert abs(r["coeffs"][0] - 2.0) < 0.1 # pendiente ~2
|
||||
assert abs(r["coeffs"][1] - 1.0) < 0.3 # intercepto ~1
|
||||
|
||||
|
||||
def test_polinomica_cuadratica():
|
||||
"""Golden: y = x**2 sobre [-10, 10] -> 'polinómica', best_degree in (2, 3)."""
|
||||
x = np.linspace(-10.0, 10.0, 60)
|
||||
y = x ** 2
|
||||
|
||||
r = classify_relationship_type(list(x), list(y))
|
||||
_assert_shape(r)
|
||||
|
||||
assert r["tipo"].startswith("polinómica")
|
||||
assert r["best_degree"] in (2, 3)
|
||||
# Una parabola perfecta queda capturada por el grado 2 (parsimonia).
|
||||
assert r["best_degree"] == 2
|
||||
assert r["r2_poly2"] > 0.99
|
||||
assert r["coeffs"] is not None and len(r["coeffs"]) == r["best_degree"] + 1
|
||||
|
||||
|
||||
def test_monotona_no_lineal():
|
||||
"""Golden: monotona convexa de cola pesada -> 'monótona no-lineal'.
|
||||
|
||||
y = 1/(N+1-i)**2 es estrictamente creciente (Spearman ~ 1) pero su cola
|
||||
explosiva hace que ni la recta ni un polinomio de grado 2/3 la ajusten
|
||||
(R^2 polinomico < 0.5), de modo que el Pearson lineal NO capta la relacion
|
||||
que el rango (Spearman) si ve. Construccion deterministica (sin azar).
|
||||
"""
|
||||
n = 200
|
||||
i = np.arange(n, dtype=float)
|
||||
y = 1.0 / (n + 1 - i) ** 2
|
||||
|
||||
r = classify_relationship_type(list(i), list(y))
|
||||
_assert_shape(r)
|
||||
|
||||
assert r["tipo"] == "monótona no-lineal"
|
||||
assert r["best_degree"] is None
|
||||
assert r["coeffs"] is None
|
||||
# Spearman fuerte y claramente por encima del Pearson.
|
||||
assert abs(r["spearman"]) >= 0.5
|
||||
assert abs(r["spearman"]) - abs(r["pearson"]) >= 0.15
|
||||
|
||||
|
||||
def test_monotona_exponencial():
|
||||
"""DoD literal: y = exp(x) (monotona no-lineal) -> 'monótona no-lineal'.
|
||||
|
||||
exp es estrictamente creciente (Spearman = 1) pero el Pearson lineal queda
|
||||
claramente por debajo (~0.86), así que la dominancia del rango la marca como
|
||||
monótona no-lineal en vez de lineal o polinómica.
|
||||
"""
|
||||
x = np.linspace(0.0, 5.0, 80)
|
||||
y = np.exp(x)
|
||||
|
||||
r = classify_relationship_type(list(x), list(y))
|
||||
_assert_shape(r)
|
||||
|
||||
assert r["tipo"] == "monótona no-lineal"
|
||||
assert r["best_degree"] is None and r["coeffs"] is None
|
||||
assert abs(r["spearman"]) >= 0.9
|
||||
assert abs(r["spearman"]) - abs(r["pearson"]) >= 0.1
|
||||
|
||||
|
||||
def test_debil_sin_forma():
|
||||
"""Golden: x e y independientes (semilla fija) -> 'débil/sin forma'."""
|
||||
rng = np.random.default_rng(0)
|
||||
x = rng.normal(0.0, 1.0, 200)
|
||||
y = rng.normal(0.0, 1.0, 200)
|
||||
|
||||
r = classify_relationship_type(list(x), list(y))
|
||||
_assert_shape(r)
|
||||
|
||||
assert r["tipo"] == "débil/sin forma"
|
||||
assert r["best_degree"] is None
|
||||
assert r["coeffs"] is None
|
||||
# Todas las senales son bajas.
|
||||
assert abs(r["pearson"]) < 0.3
|
||||
assert r["r2_linear"] < 0.1
|
||||
|
||||
|
||||
def test_lista_vacia_no_lanza():
|
||||
"""Edge: listas vacias -> dict debil canonico, sin lanzar."""
|
||||
r = classify_relationship_type([], [])
|
||||
_assert_shape(r)
|
||||
assert r["tipo"] == "débil/sin forma"
|
||||
assert r["pearson"] is None
|
||||
assert r["r2_linear"] is None
|
||||
assert r["spearman"] is None
|
||||
assert r["r2_poly2"] is None
|
||||
assert r["r2_poly3"] is None
|
||||
assert r["best_degree"] is None
|
||||
assert r["coeffs"] is None
|
||||
|
||||
|
||||
def test_longitudes_distintas_no_lanza():
|
||||
"""Edge: listas de distinta longitud -> empareja por indice, no lanza."""
|
||||
# zip trunca a la longitud minima: solo 3 pares (< 5) -> debil.
|
||||
r = classify_relationship_type([1, 2, 3, 4, 5, 6, 7, 8], [1.0, 2.0, 3.0])
|
||||
_assert_shape(r)
|
||||
assert r["tipo"] == "débil/sin forma"
|
||||
assert r["best_degree"] is None
|
||||
|
||||
|
||||
def test_todos_none_no_lanza():
|
||||
"""Edge: todos los valores None -> ningun par valido -> debil, no lanza."""
|
||||
r = classify_relationship_type([None, None, None, None, None, None],
|
||||
[None, None, None, None, None, None])
|
||||
_assert_shape(r)
|
||||
assert r["tipo"] == "débil/sin forma"
|
||||
assert r["coeffs"] is None
|
||||
|
||||
|
||||
def test_entradas_none_no_lanza():
|
||||
"""Edge: xs/ys None directamente -> debil, no lanza."""
|
||||
assert classify_relationship_type(None, None)["tipo"] == "débil/sin forma"
|
||||
assert classify_relationship_type([1.0, 2.0], None)["tipo"] == "débil/sin forma"
|
||||
|
||||
|
||||
def test_constante_no_lanza():
|
||||
"""Edge: ys constante (varianza ~0) -> debil, no lanza."""
|
||||
r = classify_relationship_type([1, 2, 3, 4, 5, 6, 7], [5, 5, 5, 5, 5, 5, 5])
|
||||
_assert_shape(r)
|
||||
assert r["tipo"] == "débil/sin forma"
|
||||
|
||||
|
||||
def test_filtra_nan_inf_bool():
|
||||
"""Edge: pares con NaN/inf/bool/None se descartan por indice."""
|
||||
nan = float("nan")
|
||||
inf = float("inf")
|
||||
# Solo i=0,1,2,3,4 quedan validos (5 pares) y forman una recta perfecta.
|
||||
xs = [0.0, 1.0, 2.0, 3.0, 4.0, nan, inf, True, None]
|
||||
ys = [1.0, 3.0, 5.0, 7.0, 9.0, 1.0, 2.0, 3.0, 4.0]
|
||||
r = classify_relationship_type(xs, ys)
|
||||
_assert_shape(r)
|
||||
# Los 5 pares validos son y = 2x + 1 exacto -> lineal.
|
||||
assert r["tipo"] == "lineal"
|
||||
assert r["best_degree"] == 1
|
||||
@@ -4,10 +4,10 @@ name: column_quality_score
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
version: "2.0.0"
|
||||
purity: pure
|
||||
signature: "def column_quality_score(col: dict) -> dict"
|
||||
description: "Calcula un score de calidad de datos 0-100 para un ColumnProfile del grupo eda, con desglose completeness/validity/consistency y lista de issues legibles. Funcion pura, no muta el input."
|
||||
description: "Calcula un score de calidad de datos 0-100 para un ColumnProfile del grupo eda. Combina completeness (0.6) y validity (0.4) con renormalizacion por aplicabilidad; los outliers, columnas constantes e ids NO bajan el score (van a observations). Devuelve desglose por dimension, issues (defectos) y observations (señales analiticas). Funcion pura, no muta el input."
|
||||
tags: [eda, data-quality, profiling, scoring, datascience]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
@@ -17,20 +17,26 @@ error_type: ""
|
||||
imports: []
|
||||
example: |
|
||||
from datascience import column_quality_score
|
||||
col = {"name": "precio", "inferred_type": "float", "null_pct": 0.2,
|
||||
"unique_pct": 0.4, "flags": [], "numeric": {"outlier_pct": 0.08}}
|
||||
col = {"name": "precio", "inferred_type": "numeric", "null_pct": 0.2,
|
||||
"unique_pct": 0.4, "flags": [], "numeric": {"outlier_pct": 8.0}}
|
||||
column_quality_score(col)
|
||||
# {"score": 86.8, "completeness": 0.8, "validity": 0.92,
|
||||
# "consistency": 1.0, "issues": ["20% nulos", "8% outliers"]}
|
||||
# {"score": 88.0, "completeness": 0.8, "validity": 1.0,
|
||||
# "applicable": ["completeness", "validity"], "issues": ["20% nulos"],
|
||||
# "observations": ["8% de valores atípicos (z-score>3): ..."]}
|
||||
tested: true
|
||||
tests:
|
||||
- "test_clean_column_high_score"
|
||||
- "test_half_null_lowers_completeness_and_score"
|
||||
- "test_constant_column_flags_issue"
|
||||
- "test_weights_60_40_native_type"
|
||||
- "test_outliers_do_not_penalize_score"
|
||||
- "test_nulls_lower_score_more_than_outliers"
|
||||
- "test_validity_from_parse_rate_lowers_score"
|
||||
- "test_validity_from_match_rate"
|
||||
- "test_free_text_renormalizes_to_completeness_only"
|
||||
- "test_all_null_column_scores_zero"
|
||||
- "test_constant_column_scores_full_and_is_observation"
|
||||
- "test_high_cardinality_id_scores_full_and_is_observation"
|
||||
- "test_mostly_null_no_double_counts_validity"
|
||||
- "test_empty_dict_does_not_crash"
|
||||
- "test_outliers_penalize_validity"
|
||||
- "test_mostly_null_flag_halves_validity"
|
||||
- "test_high_cardinality_text_flagged_as_id"
|
||||
- "test_none_values_treated_defensively"
|
||||
- "test_does_not_mutate_input"
|
||||
test_file_path: "python/functions/datascience/column_quality_score_test.py"
|
||||
@@ -38,16 +44,22 @@ file_path: "python/functions/datascience/column_quality_score.py"
|
||||
params:
|
||||
- name: col
|
||||
desc: >
|
||||
ColumnProfile dict del grupo eda (p.ej. salida de summarize_table_duckdb).
|
||||
Se leen sus claves de forma defensiva con .get(...) y se toleran valores
|
||||
None. Claves usadas: null_pct (0-1), inferred_type, semantic_type,
|
||||
unique_pct (0-1), flags (list[str], reconoce "constant"/"mostly_null"),
|
||||
numeric ({outlier_pct: 0-1, ...}|None) y match_rate (opcional, 0-1).
|
||||
ColumnProfile dict del grupo eda (p.ej. salida de summarize_table_duckdb /
|
||||
profile_table). Se leen sus claves de forma defensiva con .get(...) y se
|
||||
toleran valores None. Claves usadas: null_pct (0-1), n_rows, empty_count
|
||||
(texto), inferred_type, semantic_type, validity_rate (0-1, lo expone
|
||||
profile_table al promocionar texto a numero/fecha), match_rate (0-1),
|
||||
unique_pct (0-1), flags (list[str], reconoce
|
||||
"constant"/"possible_id"/"high_cardinality") y numeric ({outlier_pct: 0-100,
|
||||
skew, ...}|None).
|
||||
output: >
|
||||
dict con score (float 0-100, redondeado a 1 decimal), completeness (0-1),
|
||||
validity (0-1), consistency (0-1) e issues (list[str] de descripciones
|
||||
legibles de los problemas detectados). score = round(100 * (0.5*completeness
|
||||
+ 0.3*validity + 0.2*consistency), 1).
|
||||
dict con score (float 0-100, 1 decimal), completeness (0-1), validity (0-1 o
|
||||
None si no aplicable), dimensions ({completeness, validity}), applicable
|
||||
(list[str] de dimensiones que entraron en el score), issues (list[str] SOLO de
|
||||
defectos de calidad: nulos, vacios, valores no conformes) y observations
|
||||
(list[str] de señales analiticas que NO bajan el score: outliers, columna
|
||||
constante, posible id, asimetria). score = round(100 * (0.6*completeness +
|
||||
0.4*validity) / pesos_aplicables, 1), renormalizado cuando validity no aplica.
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
@@ -59,51 +71,71 @@ from datascience import column_quality_score
|
||||
col = {
|
||||
"name": "precio",
|
||||
"physical_type": "DOUBLE",
|
||||
"inferred_type": "float",
|
||||
"inferred_type": "numeric",
|
||||
"semantic_type": "",
|
||||
"count": 800,
|
||||
"n_rows": 1000,
|
||||
"null_count": 200,
|
||||
"null_pct": 0.20,
|
||||
"distinct_count": 400,
|
||||
"unique_pct": 0.40,
|
||||
"flags": [],
|
||||
"numeric": {"outlier_pct": 0.08},
|
||||
"numeric": {"outlier_pct": 8.0, "skew": 0.3},
|
||||
"categorical": None,
|
||||
"datetime": None,
|
||||
}
|
||||
|
||||
column_quality_score(col)
|
||||
# {
|
||||
# "score": 86.8,
|
||||
# "completeness": 0.8, # 1 - 0.20
|
||||
# "validity": 0.92, # 1 - min(0.08, 0.3)
|
||||
# "consistency": 1.0,
|
||||
# "issues": ["20% nulos", "8% outliers"],
|
||||
# "score": 88.0, # 100 * (0.6*0.8 + 0.4*1.0)
|
||||
# "completeness": 0.8, # 1 - 0.20
|
||||
# "validity": 1.0, # numerica nativa: el tipo es conforme
|
||||
# "dimensions": {"completeness": 0.8, "validity": 1.0},
|
||||
# "applicable": ["completeness", "validity"],
|
||||
# "issues": ["20% nulos"], # SOLO defectos de calidad
|
||||
# "observations": ["8% de valores atípicos (z-score>3): ..."], # NO bajan score
|
||||
# }
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando hayas perfilado una tabla con el grupo `eda` (p.ej.
|
||||
`summarize_table_duckdb`) y necesites un numero 0-100 por columna para
|
||||
ordenar/priorizar limpieza de datos, pintar semaforos de calidad en un
|
||||
dashboard, o decidir que columnas descartar antes de modelar. Es la capa de
|
||||
scoring sobre el ColumnProfile crudo: lee el perfil, no toca los datos.
|
||||
`summarize_table_duckdb` / `profile_table`) y necesites un numero 0-100 por
|
||||
columna para ordenar/priorizar limpieza de datos, pintar semaforos de calidad,
|
||||
o decidir que columnas descartar antes de modelar. Separa los **defectos de
|
||||
calidad reales** (`issues`: nulos, vacios, valores que no parsean a su tipo) de
|
||||
las **observaciones analiticas** (`observations`: outliers, columnas constantes,
|
||||
ids), que se reportan pero no penalizan. Es la capa de scoring sobre el
|
||||
ColumnProfile crudo: lee el perfil, no toca los datos.
|
||||
|
||||
## Notas
|
||||
## Gotchas
|
||||
|
||||
Funcion pura, sin I/O ni dependencias externas, no muta `col`. Lee todas las
|
||||
claves con `.get(...)` y tolera que vengan en `None` (un ColumnProfile recien
|
||||
salido de `summarize_table_duckdb` trae muchas claves a `None`), por lo que
|
||||
nunca falla por claves ausentes — un `{}` produce un resultado bien definido.
|
||||
Funcion pura, sin I/O, no muta `col`. Aun asi conviene saber:
|
||||
|
||||
Pesos del score: completeness 0.5, validity 0.3, consistency 0.2.
|
||||
- **Los outliers NO bajan el score.** Un valor extremo puede ser real y correcto
|
||||
(un cliente que compra mucho); detectar atipicos es analisis de la
|
||||
distribucion, no un juicio de correccion. Salen en `observations`, no en
|
||||
`issues`. Mismo trato para columnas constantes e identificadores de alta
|
||||
cardinalidad: son observaciones, no defectos.
|
||||
- **`validity` puede ser `None`** (no aplicable): texto libre sin `semantic_type`
|
||||
ni `validity_rate`, o columna 100% nula. En ese caso el score se renormaliza a
|
||||
solo `completeness` (la columna no se premia ni castiga por algo no medible).
|
||||
- **`outlier_pct` se interpreta en escala 0-100** (la que emite
|
||||
`describe_numeric`, z-score>3). Pasar una fraccion 0-1 produce un texto de
|
||||
observacion con el % equivocado, pero NUNCA afecta al score.
|
||||
- **`validity_rate` lo puebla `profile_table`** al promocionar una columna de
|
||||
texto a numero/fecha (fraccion que parsea). Si no esta presente y el tipo es
|
||||
nativo numerico/fecha/bool, `validity = 1.0`.
|
||||
- Sin doble conteo: la falta de datos cuenta solo en `completeness` (el antiguo
|
||||
castigo de `mostly_null` sobre `validity` se elimino).
|
||||
|
||||
- **completeness** = `1 - null_pct` (None -> 0 nulls -> 1.0).
|
||||
- **validity**: parte de 1.0 y penaliza `min(outlier_pct, 0.3)` en columnas
|
||||
numericas, `0.5 * (1 - match_rate)` si hay `semantic_type` declarado con
|
||||
`match_rate` bajo disponible, y multiplica por 0.5 si el flag `mostly_null`
|
||||
esta presente.
|
||||
- **consistency**: 1.0 salvo flag `constant` (-> 0.3, columna poco informativa)
|
||||
o texto con `unique_pct > 0.9` (-> 0.6, posible id de alta cardinalidad).
|
||||
## Capability growth log
|
||||
|
||||
- v2.0.0 (2026-06-30) — nueva formula de calidad (report 2046): pesos 60/40
|
||||
(completeness/validity) con renormalizacion por aplicabilidad; se elimina la
|
||||
dimension `consistency`-como-informatividad y el doble castigo de
|
||||
`mostly_null`; los outliers/constantes/ids salen del score a `observations`;
|
||||
validity mide conformidad real (parse rate / match rate / tipo nativo). Salida
|
||||
ampliada con `dimensions`, `applicable` y `observations`.
|
||||
- v1.0.0 — version inicial: pesos 50/30/20 (completeness/validity/consistency),
|
||||
los outliers penalizaban validity (con bug de escala) y consistency penalizaba
|
||||
informatividad.
|
||||
|
||||
@@ -1,34 +1,78 @@
|
||||
"""Score de calidad de datos (0-100) para un ColumnProfile del grupo eda.
|
||||
|
||||
Funcion pura: dado el perfil de una columna producido por el grupo de
|
||||
capacidad `eda` (p.ej. summarize_table_duckdb), calcula un score agregado
|
||||
de calidad junto a su desglose en completeness / validity / consistency y
|
||||
una lista de issues legibles. No realiza I/O ni muta el input.
|
||||
capacidad `eda` (p.ej. summarize_table_duckdb / profile_table), calcula un
|
||||
score agregado de calidad junto a su desglose por dimension y dos listas
|
||||
legibles separadas: `issues` (defectos de calidad reales que SI bajan el
|
||||
score) y `observations` (señales analiticas que NO bajan el score). No
|
||||
realiza I/O ni muta el input.
|
||||
|
||||
Modelo (DAMA-DMBOK / ISO 8000), ver report 2046:
|
||||
|
||||
- Solo entran en el score las dimensiones medibles automaticamente desde el
|
||||
perfil, sin fuente externa de verdad: completeness y validity por columna.
|
||||
- Renormalizacion por aplicabilidad: si una dimension no es medible en la
|
||||
columna (texto libre sin semantica -> validity no aplica; columna 100% nula
|
||||
-> validity no medible), se excluye y los pesos se renormalizan sobre las
|
||||
aplicables. Una columna ni se premia ni se castiga por algo no medible.
|
||||
- Sin doble conteo: la falta de datos cuenta solo en completeness (se elimino
|
||||
el antiguo castigo extra de `mostly_null` sobre validity).
|
||||
- Los OUTLIERS NO bajan la calidad. Un valor extremo puede ser real y
|
||||
correcto; detectar atipicos es analisis de la distribucion, no un juicio de
|
||||
coreccion. Outliers, columnas constantes e identificadores de alta
|
||||
cardinalidad pasan a `observations`, nunca a `issues`.
|
||||
"""
|
||||
|
||||
|
||||
# Pesos base de las dimensiones de columna (se renormalizan por aplicabilidad).
|
||||
_W_COMPLETENESS = 0.6
|
||||
_W_VALIDITY = 0.4
|
||||
|
||||
# Tipos inferidos cuyo almacen garantiza la conformidad de tipo (validity=1.0)
|
||||
# cuando NO vienen de una promocion de texto (en cuyo caso manda validity_rate).
|
||||
_NATIVE_TYPED = ("numeric", "integer", "float", "datetime", "date", "boolean", "bool")
|
||||
|
||||
|
||||
def column_quality_score(col: dict) -> dict:
|
||||
"""Calcula un score de calidad de datos 0-100 para un ColumnProfile.
|
||||
|
||||
El score pondera tres dimensiones:
|
||||
- completeness (0.5): proporcion de valores no nulos.
|
||||
- validity (0.3): ausencia de outliers / heuristicas de validez.
|
||||
- consistency (0.2): la columna aporta informacion (no constante, no ruido).
|
||||
El score combina solo dimensiones de calidad medibles desde el perfil, con
|
||||
renormalizacion por aplicabilidad:
|
||||
|
||||
- completeness (peso base 0.6, siempre aplica): proporcion de valores
|
||||
presentes = 1 - null_pct. En texto, las celdas vacias (`empty_count`)
|
||||
tambien cuentan como faltantes.
|
||||
- validity (peso base 0.4, cuando hay un criterio de validacion real):
|
||||
fraccion de valores no nulos conformes a su tipo/semantica. Tipo nativo
|
||||
numerico/fecha/bool = 1.0; texto promovido a numero/fecha = parse rate
|
||||
(`validity_rate`); texto con `semantic_type` regexable = `match_rate`;
|
||||
texto libre o columna 100% nula = NO aplicable (renormaliza a solo
|
||||
completeness).
|
||||
|
||||
Los outliers, columnas constantes, identificadores y asimetria fuerte NO
|
||||
bajan el score: se devuelven en `observations`.
|
||||
|
||||
Args:
|
||||
col: ColumnProfile dict del grupo eda. Se leen las claves de forma
|
||||
defensiva con .get(...) y se tolera que muchas vengan en None.
|
||||
Claves relevantes: null_pct, inferred_type, semantic_type,
|
||||
unique_pct, flags (list[str]), numeric ({outlier_pct, ...}|None),
|
||||
match_rate (opcional).
|
||||
Claves relevantes: null_pct (0-1), n_rows, empty_count,
|
||||
inferred_type, semantic_type, validity_rate (0-1, lo expone
|
||||
profile_table al promocionar texto a numero/fecha), match_rate
|
||||
(0-1), unique_pct (0-1), flags (list[str], reconoce
|
||||
"constant"/"possible_id"/"high_cardinality"), numeric
|
||||
({outlier_pct: 0-100, skew, ...}|None).
|
||||
|
||||
Returns:
|
||||
dict con:
|
||||
score (float, 0-100, redondeado a 1 decimal),
|
||||
completeness (float, 0-1),
|
||||
validity (float, 0-1),
|
||||
consistency (float, 0-1),
|
||||
issues (list[str]) descripciones legibles de los problemas.
|
||||
score (float 0-100, redondeado a 1 decimal),
|
||||
completeness (float 0-1),
|
||||
validity (float 0-1 | None si no aplicable),
|
||||
dimensions ({completeness, validity}),
|
||||
applicable (list[str] de dimensiones que entraron en el score),
|
||||
issues (list[str]) SOLO defectos de calidad (nulos, vacios,
|
||||
valores no conformes a su tipo/semantica),
|
||||
observations (list[str]) señales analiticas que NO bajan el score
|
||||
(outliers, columna constante, posible id, asimetria).
|
||||
"""
|
||||
if not isinstance(col, dict):
|
||||
col = {}
|
||||
@@ -39,103 +83,153 @@ def column_quality_score(col: dict) -> dict:
|
||||
flags = set(flags)
|
||||
|
||||
issues: list[str] = []
|
||||
observations: list[str] = []
|
||||
|
||||
inferred_type = col.get("inferred_type") or ""
|
||||
semantic_type = col.get("semantic_type") or ""
|
||||
|
||||
# --- completeness -------------------------------------------------
|
||||
null_pct = col.get("null_pct")
|
||||
if null_pct is None:
|
||||
null_pct = 0.0
|
||||
try:
|
||||
null_pct = float(null_pct)
|
||||
except (TypeError, ValueError):
|
||||
null_pct = 0.0
|
||||
null_pct = _clamp(null_pct, 0.0, 1.0)
|
||||
# Falta de datos = nulos + (en texto) celdas vacias. Es el unico sitio
|
||||
# donde la falta de datos cuenta: nunca se duplica en validity.
|
||||
null_pct = _clamp(_num(col.get("null_pct"), 0.0), 0.0, 1.0)
|
||||
completeness = 1.0 - null_pct
|
||||
if null_pct > 0:
|
||||
issues.append(f"{round(null_pct * 100)}% nulos")
|
||||
issues.append(f"{_pct(null_pct)} nulos")
|
||||
|
||||
# --- validity -----------------------------------------------------
|
||||
validity = 1.0
|
||||
inferred_type = col.get("inferred_type") or ""
|
||||
empty_frac = 0.0
|
||||
n_rows = col.get("n_rows")
|
||||
empty_count = col.get("empty_count")
|
||||
if (
|
||||
isinstance(n_rows, (int, float)) and not isinstance(n_rows, bool) and n_rows > 0
|
||||
and isinstance(empty_count, (int, float)) and not isinstance(empty_count, bool)
|
||||
and empty_count > 0
|
||||
):
|
||||
empty_frac = _clamp(float(empty_count) / float(n_rows), 0.0, 1.0)
|
||||
completeness = _clamp(completeness - empty_frac, 0.0, 1.0)
|
||||
issues.append(f"{_pct(empty_frac)} vacíos")
|
||||
|
||||
numeric = col.get("numeric")
|
||||
is_numeric = inferred_type in ("integer", "float", "numeric") or isinstance(numeric, dict)
|
||||
if isinstance(numeric, dict):
|
||||
outlier_pct = numeric.get("outlier_pct")
|
||||
if outlier_pct is not None:
|
||||
try:
|
||||
outlier_pct = float(outlier_pct)
|
||||
except (TypeError, ValueError):
|
||||
outlier_pct = 0.0
|
||||
outlier_pct = _clamp(outlier_pct, 0.0, 1.0)
|
||||
if outlier_pct > 0:
|
||||
penalty = min(outlier_pct, 0.3)
|
||||
validity -= penalty
|
||||
issues.append(f"{round(outlier_pct * 100)}% outliers")
|
||||
|
||||
# semantic_type declarado pero con baja tasa de match (si la conocemos).
|
||||
semantic_type = col.get("semantic_type") or ""
|
||||
match_rate = col.get("match_rate")
|
||||
if semantic_type and match_rate is not None:
|
||||
try:
|
||||
match_rate = float(match_rate)
|
||||
except (TypeError, ValueError):
|
||||
match_rate = None
|
||||
if match_rate is not None:
|
||||
match_rate = _clamp(match_rate, 0.0, 1.0)
|
||||
if match_rate < 1.0:
|
||||
shortfall = 1.0 - match_rate
|
||||
validity -= 0.5 * shortfall
|
||||
issues.append(
|
||||
f"semantic_type '{semantic_type}' con baja coincidencia "
|
||||
f"({round(match_rate * 100)}%)"
|
||||
)
|
||||
|
||||
if "mostly_null" in flags:
|
||||
validity *= 0.5
|
||||
issues.append("mayoritariamente nula")
|
||||
|
||||
validity = _clamp(validity, 0.0, 1.0)
|
||||
|
||||
# --- consistency --------------------------------------------------
|
||||
consistency = 1.0
|
||||
if "constant" in flags:
|
||||
consistency = 0.3
|
||||
issues.append("columna constante")
|
||||
# --- validity (con renormalizacion por aplicabilidad) -------------
|
||||
# None = no medible -> se excluye del score (no penaliza ni premia).
|
||||
validity = None
|
||||
if completeness <= 0.0:
|
||||
# Columna 100% faltante: no hay valores no nulos sobre los que medir
|
||||
# conformidad. validity no aplica -> el score sale solo de completeness
|
||||
# (= 0). Es el peor defecto de calidad posible.
|
||||
validity = None
|
||||
else:
|
||||
unique_pct = col.get("unique_pct")
|
||||
if unique_pct is not None:
|
||||
try:
|
||||
unique_pct = float(unique_pct)
|
||||
except (TypeError, ValueError):
|
||||
unique_pct = None
|
||||
if (
|
||||
inferred_type == "text"
|
||||
validity_rate = col.get("validity_rate")
|
||||
match_rate = col.get("match_rate")
|
||||
if validity_rate is not None:
|
||||
# Texto promovido a numero/fecha: parse rate real de la muestra.
|
||||
v = _num(validity_rate, None)
|
||||
if v is not None:
|
||||
validity = _clamp(v, 0.0, 1.0)
|
||||
if validity < 1.0:
|
||||
kind = (
|
||||
"número" if inferred_type == "numeric"
|
||||
else "fecha" if inferred_type == "datetime"
|
||||
else inferred_type or "su tipo"
|
||||
)
|
||||
issues.append(
|
||||
f"{_pct(1.0 - validity)} no parsea al tipo {kind}"
|
||||
)
|
||||
elif inferred_type in _NATIVE_TYPED:
|
||||
# Tipo nativo garantizado por el almacen: no hay valores que no
|
||||
# parseen. validity = 1.0 (no se confunde con tener outliers).
|
||||
validity = 1.0
|
||||
elif semantic_type and match_rate is not None:
|
||||
v = _num(match_rate, None)
|
||||
if v is not None:
|
||||
validity = _clamp(v, 0.0, 1.0)
|
||||
if validity < 1.0:
|
||||
issues.append(
|
||||
f"{_pct(1.0 - validity)} no casa con el "
|
||||
f"formato «{semantic_type}»"
|
||||
)
|
||||
else:
|
||||
# Texto libre / categorica sin semantica: no hay criterio honesto
|
||||
# de validez. No aplica.
|
||||
validity = None
|
||||
|
||||
# --- observations (NO bajan el score) -----------------------------
|
||||
numeric = col.get("numeric")
|
||||
if isinstance(numeric, dict):
|
||||
# outlier_pct viene en escala 0-100 desde describe_numeric (z-score>3).
|
||||
outlier_pct = _num(numeric.get("outlier_pct"), None)
|
||||
if outlier_pct is not None and outlier_pct >= 0.05:
|
||||
observations.append(
|
||||
f"{_pct(outlier_pct / 100.0)} de valores atípicos (z-score>3): "
|
||||
"revisar si son errores u observaciones legítimas"
|
||||
)
|
||||
skew = _num(numeric.get("skew"), None)
|
||||
if skew is not None and abs(skew) >= 1.0:
|
||||
observations.append(
|
||||
f"asimetría fuerte (skew={round(skew, 2)}): considerar "
|
||||
"re-expresión antes de modelar"
|
||||
)
|
||||
|
||||
if "constant" in flags:
|
||||
observations.append(
|
||||
"columna constante: aporta poca información para el análisis"
|
||||
)
|
||||
|
||||
unique_pct = _num(col.get("unique_pct"), None)
|
||||
is_id = (
|
||||
"possible_id" in flags
|
||||
or "high_cardinality" in flags
|
||||
or (
|
||||
inferred_type in ("text", "categorical")
|
||||
and unique_pct is not None
|
||||
and _clamp(unique_pct, 0.0, 1.0) > 0.9
|
||||
):
|
||||
consistency = 0.6
|
||||
issues.append("posible id de alta cardinalidad")
|
||||
|
||||
consistency = _clamp(consistency, 0.0, 1.0)
|
||||
|
||||
# --- score agregado ----------------------------------------------
|
||||
score = round(
|
||||
100.0 * (0.5 * completeness + 0.3 * validity + 0.2 * consistency),
|
||||
1,
|
||||
)
|
||||
)
|
||||
if is_id:
|
||||
observations.append(
|
||||
"valores casi únicos: posible identificador (no es un defecto de calidad)"
|
||||
)
|
||||
|
||||
# Silencia warnings sobre la variable de tipo no usada.
|
||||
_ = is_numeric
|
||||
# --- score agregado con renormalizacion ---------------------------
|
||||
applicable = ["completeness"]
|
||||
num = _W_COMPLETENESS * completeness
|
||||
den = _W_COMPLETENESS
|
||||
if validity is not None:
|
||||
applicable.append("validity")
|
||||
num += _W_VALIDITY * validity
|
||||
den += _W_VALIDITY
|
||||
score = round(100.0 * num / den, 1) if den > 0 else 0.0
|
||||
|
||||
return {
|
||||
"score": score,
|
||||
"completeness": completeness,
|
||||
"validity": validity,
|
||||
"consistency": consistency,
|
||||
"dimensions": {"completeness": completeness, "validity": validity},
|
||||
"applicable": applicable,
|
||||
"issues": issues,
|
||||
"observations": observations,
|
||||
}
|
||||
|
||||
|
||||
def _pct(frac: float) -> str:
|
||||
"""Formatea una fraccion 0-1 como porcentaje honesto: «N%» si >=1%, «0.N%»
|
||||
por debajo (para no mostrar «0%» cuando hay un defecto real pequeño)."""
|
||||
p = frac * 100.0
|
||||
if p >= 1.0:
|
||||
return f"{round(p)}%"
|
||||
return f"{p:.1f}%"
|
||||
|
||||
|
||||
def _num(x, default):
|
||||
"""Convierte x a float; devuelve `default` si es None o no parseable."""
|
||||
if x is None:
|
||||
return default
|
||||
if isinstance(x, bool):
|
||||
return default
|
||||
try:
|
||||
return float(x)
|
||||
except (TypeError, ValueError):
|
||||
return default
|
||||
|
||||
|
||||
def _clamp(x: float, lo: float, hi: float) -> float:
|
||||
"""Recorta x al rango [lo, hi]."""
|
||||
if x < lo:
|
||||
|
||||
@@ -1,4 +1,12 @@
|
||||
"""Tests para column_quality_score."""
|
||||
"""Tests para column_quality_score (nueva fórmula, report 2046).
|
||||
|
||||
Verifica las invariantes de la fórmula de calidad:
|
||||
- completeness (0.6) + validity (0.4) con renormalización por aplicabilidad.
|
||||
- Los OUTLIERS no bajan el score (van a observations, no a issues).
|
||||
- Columnas constantes e ids no bajan el score (observations).
|
||||
- Sin doble conteo de la falta de datos.
|
||||
- all-null -> score 0; función pura (no muta el input).
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
@@ -9,11 +17,11 @@ from column_quality_score import column_quality_score
|
||||
|
||||
|
||||
def _clean_numeric_col() -> dict:
|
||||
"""ColumnProfile de una columna numerica sana, sin problemas."""
|
||||
"""ColumnProfile de una columna numérica nativa sana, sin problemas."""
|
||||
return {
|
||||
"name": "edad",
|
||||
"physical_type": "INTEGER",
|
||||
"inferred_type": "integer",
|
||||
"inferred_type": "numeric",
|
||||
"semantic_type": "",
|
||||
"count": 1000,
|
||||
"n_rows": 1000,
|
||||
@@ -28,85 +36,163 @@ def _clean_numeric_col() -> dict:
|
||||
}
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Golden
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_clean_column_high_score():
|
||||
out = column_quality_score(_clean_numeric_col())
|
||||
assert out["score"] > 90
|
||||
assert out["score"] == 100.0
|
||||
assert out["completeness"] == 1.0
|
||||
assert out["validity"] == 1.0
|
||||
assert out["consistency"] == 1.0
|
||||
assert out["applicable"] == ["completeness", "validity"]
|
||||
assert out["issues"] == []
|
||||
assert out["observations"] == []
|
||||
|
||||
|
||||
def test_half_null_lowers_completeness_and_score():
|
||||
def test_weights_60_40_native_type():
|
||||
"""30% nulos en numérica nativa: score = 100*(0.6*0.7 + 0.4*1.0) = 82."""
|
||||
col = _clean_numeric_col()
|
||||
col["null_count"] = 500
|
||||
col["null_pct"] = 0.5
|
||||
clean_score = column_quality_score(_clean_numeric_col())["score"]
|
||||
col["null_pct"] = 0.30
|
||||
col["null_count"] = 300
|
||||
out = column_quality_score(col)
|
||||
assert out["completeness"] == 0.5
|
||||
assert out["score"] < clean_score
|
||||
assert any("nulos" in issue for issue in out["issues"])
|
||||
assert out["completeness"] == 0.7
|
||||
assert out["validity"] == 1.0
|
||||
assert out["score"] == 82.0
|
||||
assert any("nulos" in i for i in out["issues"])
|
||||
|
||||
|
||||
def test_constant_column_flags_issue():
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Outliers FUERA del score
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_outliers_do_not_penalize_score():
|
||||
"""Columna con outliers pero sin nulos -> score máximo; outliers en observations."""
|
||||
col = _clean_numeric_col()
|
||||
col["numeric"] = {"outlier_pct": 18.0, "skew": 0.2} # 18% atípicos (escala 0-100)
|
||||
out = column_quality_score(col)
|
||||
assert out["score"] == 100.0 # los outliers NO bajan la calidad
|
||||
assert out["validity"] == 1.0
|
||||
# No aparecen como problema de calidad...
|
||||
assert not any("atípic" in i or "outlier" in i for i in out["issues"])
|
||||
# ...sino como observación analítica.
|
||||
assert any("atípic" in o for o in out["observations"])
|
||||
|
||||
|
||||
def test_nulls_lower_score_more_than_outliers():
|
||||
"""Vacíos sí penalizan; outliers no: comparar las dos columnas."""
|
||||
con_nulos = _clean_numeric_col()
|
||||
con_nulos["null_pct"] = 0.30
|
||||
con_outliers = _clean_numeric_col()
|
||||
con_outliers["numeric"] = {"outlier_pct": 30.0}
|
||||
assert column_quality_score(con_nulos)["score"] < \
|
||||
column_quality_score(con_outliers)["score"]
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Validity: aplicabilidad y renormalización
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_validity_from_parse_rate_lowers_score():
|
||||
"""Numérica como texto con 20% basura: validity=0.8 -> score=92."""
|
||||
col = {
|
||||
"name": "precio_txt", "inferred_type": "numeric", "semantic_type": "decimal",
|
||||
"null_pct": 0.0, "validity_rate": 0.80, "flags": [], "numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] == 0.8
|
||||
assert out["score"] == 92.0 # 100*(0.6 + 0.4*0.8)
|
||||
assert any("no parsea" in i for i in out["issues"])
|
||||
|
||||
|
||||
def test_validity_from_match_rate():
|
||||
"""Texto con semantic_type y 5% no conforme: validity=0.95."""
|
||||
col = {
|
||||
"name": "email", "inferred_type": "text", "semantic_type": "email",
|
||||
"null_pct": 0.0, "match_rate": 0.95, "unique_pct": 0.5, "flags": [],
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] == 0.95
|
||||
assert out["score"] == 98.0 # 100*(0.6 + 0.4*0.95)
|
||||
assert any("no casa" in i for i in out["issues"])
|
||||
|
||||
|
||||
def test_free_text_renormalizes_to_completeness_only():
|
||||
"""Texto libre sin semántica: validity no aplica -> score = 100*completeness."""
|
||||
col = {
|
||||
"name": "comentario", "inferred_type": "text", "semantic_type": "",
|
||||
"null_pct": 0.30, "unique_pct": 0.5, "flags": [], "numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] is None
|
||||
assert out["applicable"] == ["completeness"]
|
||||
assert out["completeness"] == 0.7
|
||||
assert out["score"] == 70.0 # renormalizado a solo completeness
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Casos límite (report §4.6)
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_all_null_column_scores_zero():
|
||||
col = _clean_numeric_col()
|
||||
col["null_pct"] = 1.0
|
||||
col["null_count"] = 1000
|
||||
out = column_quality_score(col)
|
||||
assert out["completeness"] == 0.0
|
||||
assert out["validity"] is None # no medible sin valores no nulos
|
||||
assert out["score"] == 0.0
|
||||
|
||||
|
||||
def test_constant_column_scores_full_and_is_observation():
|
||||
"""Columna constante: dato válido y completo -> score 100; baja info = observación."""
|
||||
col = _clean_numeric_col()
|
||||
col["flags"] = ["constant"]
|
||||
col["distinct_count"] = 1
|
||||
col["unique_pct"] = 0.001
|
||||
out = column_quality_score(col)
|
||||
assert out["consistency"] == 0.3
|
||||
assert any("constante" in issue for issue in out["issues"])
|
||||
assert out["score"] == 100.0 # NO se castiga la baja informatividad
|
||||
assert not any("constante" in i for i in out["issues"])
|
||||
assert any("constante" in o for o in out["observations"])
|
||||
|
||||
|
||||
def test_high_cardinality_id_scores_full_and_is_observation():
|
||||
"""Id de alta cardinalidad: unicidad perfecta -> score 100; posible id = observación."""
|
||||
col = {
|
||||
"name": "uuid", "inferred_type": "text", "semantic_type": "",
|
||||
"null_pct": 0.0, "unique_pct": 0.99, "flags": ["possible_id"],
|
||||
"numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["score"] == 100.0
|
||||
assert not any("identificador" in i for i in out["issues"])
|
||||
assert any("identificador" in o for o in out["observations"])
|
||||
|
||||
|
||||
def test_mostly_null_no_double_counts_validity():
|
||||
"""85% nulos: solo completeness penaliza; validity nativa sigue 1.0 (sin doble castigo)."""
|
||||
col = _clean_numeric_col()
|
||||
col["null_pct"] = 0.85
|
||||
col["flags"] = ["mostly_null"]
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] == 1.0 # ya no se multiplica por 0.5
|
||||
# score = 100*(0.6*0.15 + 0.4*1.0) = 49
|
||||
assert out["score"] == 49.0
|
||||
assert not any("mayoritariamente" in o for o in out["observations"])
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# Robustez
|
||||
# --------------------------------------------------------------------------- #
|
||||
def test_empty_dict_does_not_crash():
|
||||
out = column_quality_score({})
|
||||
assert isinstance(out["score"], float)
|
||||
assert out["completeness"] == 1.0
|
||||
assert 0.0 <= out["score"] <= 100.0
|
||||
assert isinstance(out["issues"], list)
|
||||
|
||||
|
||||
def test_outliers_penalize_validity():
|
||||
col = _clean_numeric_col()
|
||||
col["numeric"] = {"outlier_pct": 0.2}
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] < 1.0
|
||||
assert any("outliers" in issue for issue in out["issues"])
|
||||
|
||||
|
||||
def test_mostly_null_flag_halves_validity():
|
||||
col = _clean_numeric_col()
|
||||
col["null_pct"] = 0.85
|
||||
col["flags"] = ["mostly_null"]
|
||||
out = column_quality_score(col)
|
||||
assert out["validity"] == 0.5
|
||||
assert any("mayoritariamente nula" in issue for issue in out["issues"])
|
||||
|
||||
|
||||
def test_high_cardinality_text_flagged_as_id():
|
||||
col = {
|
||||
"name": "uuid",
|
||||
"inferred_type": "text",
|
||||
"semantic_type": "",
|
||||
"null_pct": 0.0,
|
||||
"unique_pct": 0.99,
|
||||
"flags": [],
|
||||
"numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["consistency"] < 1.0
|
||||
assert any("alta cardinalidad" in issue for issue in out["issues"])
|
||||
assert isinstance(out["observations"], list)
|
||||
|
||||
|
||||
def test_none_values_treated_defensively():
|
||||
col = {
|
||||
"name": "x",
|
||||
"inferred_type": None,
|
||||
"semantic_type": None,
|
||||
"null_pct": None,
|
||||
"unique_pct": None,
|
||||
"flags": None,
|
||||
"numeric": None,
|
||||
"name": "x", "inferred_type": None, "semantic_type": None,
|
||||
"null_pct": None, "unique_pct": None, "flags": None, "numeric": None,
|
||||
}
|
||||
out = column_quality_score(col)
|
||||
assert out["completeness"] == 1.0
|
||||
|
||||
@@ -0,0 +1,102 @@
|
||||
---
|
||||
id: compute_text_duplicates_py_datascience
|
||||
name: compute_text_duplicates
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def compute_text_duplicates(texts, near_threshold=0.85, sample_max=2000) -> dict"
|
||||
description: "Detecta documentos duplicados en un corpus de texto. Los duplicados EXACTOS se calculan siempre con la stdlib: cada documento se normaliza (colapsa espacios, strip, lower) y se hashea con SHA-1; n_exact_dup es cuántos docs repiten uno ya visto y exact_dup_pct su porcentaje. Los CASI-duplicados (near-dup) usan la dependencia OPCIONAL datasketch (MinHash + LSH sobre 3-shingles de palabras); si no está instalada, esa parte degrada a available:False sin afectar al resto. Estilo dict-no-throw del grupo eda — nunca lanza."
|
||||
tags: [eda, datascience, text, nlp, duplicates, minhash, pure, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: [hashlib, re]
|
||||
example: |
|
||||
from datascience.compute_text_duplicates import compute_text_duplicates
|
||||
texts = ["El gato come pescado", "El gato come pescado", "Un perro ladra"]
|
||||
result = compute_text_duplicates(texts)
|
||||
# {"n_docs": 3, "n_exact_dup": 1, "exact_dup_pct": 33.33, "n_unique": 2,
|
||||
# "near_dup": {"available": False, "n_near_dup_docs": 0}}
|
||||
tested: true
|
||||
tests:
|
||||
- "test_duplicados_exactos"
|
||||
- "test_sin_duplicados"
|
||||
- "test_vacio"
|
||||
- "test_near_dup_degrada"
|
||||
test_file_path: "python/functions/datascience/compute_text_duplicates_test.py"
|
||||
file_path: "python/functions/datascience/compute_text_duplicates.py"
|
||||
params:
|
||||
- name: texts
|
||||
desc: "Lista de documentos de texto. Los elementos None o que no sean str se descartan silenciosamente; n_docs cuenta solo los documentos válidos. None como argumento se trata como lista vacía."
|
||||
- name: near_threshold
|
||||
desc: "Umbral de similitud Jaccard (0–1) para considerar dos documentos casi-duplicados en el cálculo near-dup vía MinHashLSH. Solo aplica si datasketch está instalada. Default 0.85."
|
||||
- name: sample_max
|
||||
desc: "Número máximo de documentos muestreados (los primeros) para el cálculo near-dup, que es O(n) en memoria de MinHashes. No afecta al conteo de duplicados exactos, que siempre recorre todo el corpus. Default 2000."
|
||||
output: "Dict con exactamente 5 claves, siempre presentes: n_docs (int, docs válidos), n_exact_dup (int, docs que repiten un texto normalizado ya visto = n_docs - n_unique), exact_dup_pct (float a 2 decimales = n_exact_dup/n_docs*100, o None si el corpus está vacío), n_unique (int, nº de textos normalizados distintos), y near_dup (sub-dict con available:bool y n_near_dup_docs:int; cuando available es True incluye además threshold con el near_threshold usado). La función nunca lanza: captura toda excepción y degrada."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.compute_text_duplicates import compute_text_duplicates
|
||||
|
||||
# Tres copias del mismo texto (con espacios/casing distintos) + dos únicos.
|
||||
texts = [
|
||||
"El gato come pescado",
|
||||
"El gato come pescado",
|
||||
"el GATO come pescado", # mismo tras normalizar
|
||||
"Un perro ladra",
|
||||
"La luna brilla",
|
||||
]
|
||||
|
||||
compute_text_duplicates(texts)
|
||||
# {
|
||||
# "n_docs": 5,
|
||||
# "n_exact_dup": 2, # 3 copias del primer texto => 2 repeticiones
|
||||
# "exact_dup_pct": 40.0, # 2 / 5 * 100
|
||||
# "n_unique": 3, # 3 textos normalizados distintos
|
||||
# "near_dup": {"available": False, "n_near_dup_docs": 0}, # datasketch ausente
|
||||
# }
|
||||
|
||||
# Corpus vacío: contrato estable, exact_dup_pct None, sin excepción.
|
||||
compute_text_duplicates([])
|
||||
# {"n_docs": 0, "n_exact_dup": 0, "exact_dup_pct": None, "n_unique": 0,
|
||||
# "near_dup": {"available": False, "n_near_dup_docs": 0}}
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala en la fase de calidad de un EDA de texto, cuando quieras saber cuánto de
|
||||
tu corpus es ruido duplicado antes de entrenar, vectorizar o muestrear: te da
|
||||
el porcentaje de duplicados exactos (`exact_dup_pct`), el número de documentos
|
||||
únicos (`n_unique`) y, si tienes `datasketch` instalada, una estimación de
|
||||
casi-duplicados (paráfrasis, copias con pequeñas ediciones) vía MinHash + LSH.
|
||||
Pásale directamente la columna/lista de textos crudos; la función filtra None y
|
||||
no-str por ti y nunca lanza, así que es segura para encadenar en pipelines de
|
||||
perfilado.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Near-dup requiere `datasketch` (opcional).** Si la librería no está
|
||||
instalada, `near_dup` degrada a `{"available": False, "n_near_dup_docs": 0}`
|
||||
(sin clave `threshold`) y el resto del resultado se calcula igual. Los
|
||||
duplicados **exactos** funcionan siempre porque solo usan la stdlib (hash).
|
||||
- **Normalización de exactos.** Dos textos cuentan como el mismo duplicado
|
||||
exacto si coinciden tras `" ".join(doc.split()).strip().lower()`: se colapsan
|
||||
espacios/tabuladores/saltos, se recortan extremos y se ignora el caso. Cambios
|
||||
de puntuación o acentos SÍ los distinguen (no se eliminan).
|
||||
- **`n_exact_dup` cuenta repeticiones, no grupos.** Con 3 copias de un mismo
|
||||
texto, `n_exact_dup` es 2 (las dos copias extra), no 1. Equivale a
|
||||
`n_docs - n_unique`.
|
||||
- **`exact_dup_pct` es `None` con corpus vacío** (no `ZeroDivisionError`); en
|
||||
cualquier otro caso es un float redondeado a 2 decimales.
|
||||
- **`sample_max` solo limita el near-dup.** El conteo de duplicados exactos
|
||||
recorre todo el corpus; el near-dup muestrea los primeros `sample_max`
|
||||
documentos para acotar memoria. Si el corpus está ordenado, considera barajar
|
||||
antes para que la muestra sea representativa.
|
||||
- **Elementos no-str se descartan.** `True`/`False` no cuentan como str y se
|
||||
ignoran igual que `None`; `n_docs` refleja solo los documentos válidos.
|
||||
@@ -0,0 +1,128 @@
|
||||
"""Detección de documentos duplicados en un corpus de texto.
|
||||
|
||||
Función pura, estilo dict-no-throw del grupo `eda`: nunca lanza, siempre
|
||||
devuelve el mismo contrato de claves. Los duplicados EXACTOS se calculan
|
||||
siempre con la stdlib (normalización + hash SHA-1). Los CASI-duplicados
|
||||
(near-dup) requieren la dependencia opcional `datasketch`; si no está
|
||||
instalada, esa parte degrada limpiamente a ``available: False`` sin afectar
|
||||
al resto del cálculo.
|
||||
"""
|
||||
|
||||
import hashlib
|
||||
import re
|
||||
|
||||
|
||||
def _compute_near_dup(valid, near_threshold, sample_max):
|
||||
"""Cuenta documentos con al menos otro casi-duplicado vía MinHash + LSH.
|
||||
|
||||
Import perezoso de ``datasketch``. Si la librería no está disponible (o
|
||||
cualquier paso falla), degrada a ``{"available": False, "n_near_dup_docs": 0}``
|
||||
sin propagar la excepción.
|
||||
|
||||
Args:
|
||||
valid: lista de str ya filtrada (sin None ni no-str).
|
||||
near_threshold: umbral de similitud Jaccard para LSH.
|
||||
sample_max: número máximo de documentos a muestrear.
|
||||
|
||||
Returns:
|
||||
dict con ``available`` (bool) y ``n_near_dup_docs`` (int). Cuando
|
||||
``available`` es True, incluye además ``threshold``.
|
||||
"""
|
||||
try:
|
||||
from datasketch import MinHash, MinHashLSH
|
||||
except Exception:
|
||||
return {"available": False, "n_near_dup_docs": 0}
|
||||
|
||||
try:
|
||||
docs = valid[:sample_max]
|
||||
num_perm = 128
|
||||
lsh = MinHashLSH(threshold=near_threshold, num_perm=num_perm)
|
||||
minhashes = {}
|
||||
|
||||
for i, doc in enumerate(docs):
|
||||
tokens = re.findall(r"\w+", doc.lower())
|
||||
shingles = set()
|
||||
for j in range(len(tokens) - 2):
|
||||
shingles.add(" ".join(tokens[j:j + 3]))
|
||||
# Documentos con menos de 3 tokens no generan 3-shingles: caemos a
|
||||
# los tokens sueltos para no perderlos del todo.
|
||||
if not shingles:
|
||||
shingles = set(tokens)
|
||||
if not shingles:
|
||||
# Documento sin tokens (cadena vacía / solo símbolos): se omite.
|
||||
continue
|
||||
m = MinHash(num_perm=num_perm)
|
||||
for sh in shingles:
|
||||
m.update(sh.encode("utf-8"))
|
||||
key = "d{}".format(i)
|
||||
minhashes[key] = m
|
||||
lsh.insert(key, m)
|
||||
|
||||
n_near = 0
|
||||
for key, m in minhashes.items():
|
||||
matches = lsh.query(m)
|
||||
if len(matches) > 1:
|
||||
n_near += 1
|
||||
|
||||
return {
|
||||
"available": True,
|
||||
"n_near_dup_docs": int(n_near),
|
||||
"threshold": near_threshold,
|
||||
}
|
||||
except Exception:
|
||||
return {"available": False, "n_near_dup_docs": 0}
|
||||
|
||||
|
||||
def compute_text_duplicates(texts, near_threshold=0.85, sample_max=2000) -> dict:
|
||||
"""Detecta duplicados exactos y casi-duplicados en un corpus de texto.
|
||||
|
||||
Args:
|
||||
texts: lista de documentos. Los elementos None o que no sean str se
|
||||
descartan; ``n_docs`` cuenta solo los válidos.
|
||||
near_threshold: umbral de similitud Jaccard para considerar dos
|
||||
documentos casi-duplicados (solo near-dup, requiere datasketch).
|
||||
sample_max: tope de documentos muestreados para el cálculo near-dup.
|
||||
|
||||
Returns:
|
||||
dict con las claves ``n_docs``, ``n_exact_dup``, ``exact_dup_pct``
|
||||
(float redondeado a 2 decimales, o None si el corpus está vacío),
|
||||
``n_unique`` y ``near_dup`` (sub-dict con ``available`` y
|
||||
``n_near_dup_docs``, más ``threshold`` cuando está disponible).
|
||||
Nunca lanza: captura toda excepción y degrada.
|
||||
"""
|
||||
# Filtrado defensivo de documentos válidos.
|
||||
try:
|
||||
valid = [t for t in texts if isinstance(t, str)] if texts is not None else []
|
||||
except Exception:
|
||||
valid = []
|
||||
|
||||
n_docs = len(valid)
|
||||
|
||||
# Duplicados exactos: normalizar + hash SHA-1 (stdlib, siempre disponible).
|
||||
try:
|
||||
seen = set()
|
||||
n_exact_dup = 0
|
||||
for doc in valid:
|
||||
norm = " ".join(doc.split()).strip().lower()
|
||||
digest = hashlib.sha1(norm.encode("utf-8")).hexdigest()
|
||||
if digest in seen:
|
||||
n_exact_dup += 1
|
||||
else:
|
||||
seen.add(digest)
|
||||
n_unique = len(seen)
|
||||
except Exception:
|
||||
n_exact_dup = 0
|
||||
n_unique = 0
|
||||
|
||||
exact_dup_pct = round(n_exact_dup / n_docs * 100, 2) if n_docs > 0 else None
|
||||
|
||||
# Casi-duplicados: opcional vía datasketch, degrada solo.
|
||||
near_dup = _compute_near_dup(valid, near_threshold, sample_max)
|
||||
|
||||
return {
|
||||
"n_docs": n_docs,
|
||||
"n_exact_dup": n_exact_dup,
|
||||
"exact_dup_pct": exact_dup_pct,
|
||||
"n_unique": n_unique,
|
||||
"near_dup": near_dup,
|
||||
}
|
||||
@@ -0,0 +1,77 @@
|
||||
"""Tests para compute_text_duplicates.
|
||||
|
||||
Importa el modulo hoja directamente (`datascience.compute_text_duplicates`)
|
||||
para no depender de que el paquete reexporte la funcion en su __init__.
|
||||
datasketch normalmente NO esta instalada en el venv, asi que near_dup
|
||||
degrada a available=False; los tests no requieren la libreria.
|
||||
"""
|
||||
|
||||
from datascience.compute_text_duplicates import compute_text_duplicates
|
||||
|
||||
|
||||
EXPECTED_KEYS = {"n_docs", "n_exact_dup", "exact_dup_pct", "n_unique", "near_dup"}
|
||||
|
||||
|
||||
def test_duplicados_exactos():
|
||||
"""3 copias del mismo texto + 2 únicos: n_exact_dup=2, pct>0."""
|
||||
texts = [
|
||||
"El gato come pescado",
|
||||
"El gato come pescado",
|
||||
"el GATO come pescado", # mismo tras normalizar (espacios + case)
|
||||
"Un perro ladra",
|
||||
"La luna brilla",
|
||||
]
|
||||
result = compute_text_duplicates(texts)
|
||||
|
||||
assert set(result.keys()) == EXPECTED_KEYS
|
||||
assert result["n_docs"] == 5
|
||||
# 3 copias del primer texto (2 son repeticion) + 2 textos unicos.
|
||||
assert result["n_exact_dup"] == 2
|
||||
assert result["n_unique"] == 3
|
||||
assert result["exact_dup_pct"] is not None
|
||||
assert result["exact_dup_pct"] > 0
|
||||
# 2 / 5 * 100 = 40.0
|
||||
assert abs(result["exact_dup_pct"] - 40.0) < 1e-9
|
||||
|
||||
|
||||
def test_sin_duplicados():
|
||||
"""Corpus sin repeticiones: n_exact_dup=0, n_unique==n_docs."""
|
||||
texts = [
|
||||
"primero documento distinto",
|
||||
"segundo documento distinto",
|
||||
"tercero documento distinto",
|
||||
]
|
||||
result = compute_text_duplicates(texts)
|
||||
|
||||
assert result["n_docs"] == 3
|
||||
assert result["n_exact_dup"] == 0
|
||||
assert result["n_unique"] == 3
|
||||
assert abs(result["exact_dup_pct"] - 0.0) < 1e-9
|
||||
|
||||
|
||||
def test_vacio():
|
||||
"""Corpus vacio: n_docs 0, exact_dup_pct None, no lanza."""
|
||||
result = compute_text_duplicates([])
|
||||
|
||||
assert set(result.keys()) == EXPECTED_KEYS
|
||||
assert result["n_docs"] == 0
|
||||
assert result["n_exact_dup"] == 0
|
||||
assert result["exact_dup_pct"] is None
|
||||
assert result["n_unique"] == 0
|
||||
assert result["near_dup"]["n_near_dup_docs"] == 0
|
||||
|
||||
|
||||
def test_near_dup_degrada():
|
||||
"""near_dup expone 'available' (bool) y no lanza aunque falte datasketch."""
|
||||
texts = ["uno dos tres cuatro", "uno dos tres cuatro cinco", "algo distinto"]
|
||||
result = compute_text_duplicates(texts)
|
||||
|
||||
near = result["near_dup"]
|
||||
assert "available" in near
|
||||
assert isinstance(near["available"], bool)
|
||||
assert "n_near_dup_docs" in near
|
||||
assert isinstance(near["n_near_dup_docs"], int)
|
||||
# Tambien tolera None y entradas no-str sin lanzar.
|
||||
mixed = compute_text_duplicates(["hola", None, 123, "hola"])
|
||||
assert mixed["n_docs"] == 2
|
||||
assert mixed["n_exact_dup"] == 1
|
||||
@@ -0,0 +1,86 @@
|
||||
---
|
||||
id: compute_text_length_stats_py_datascience
|
||||
name: compute_text_length_stats
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def compute_text_length_stats(texts, n_bins=20) -> dict"
|
||||
description: "Profiles the length distribution of a corpus of text documents for EDA: per-document characters, words (unicode \\w+ tokens) and sentences (segments split on .!?… with a minimum of 1 per non-empty doc), each summarized with mean/p50/p90/p99/min/max (nearest-rank percentiles), plus an equal-width histogram of per-document word counts. None and non-str items are discarded. Dict-no-throw: never raises. Stdlib only (re)."
|
||||
tags: [eda, datascience, text, nlp, length, statistics, pure, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: [re, math]
|
||||
example: |
|
||||
from datascience.compute_text_length_stats import compute_text_length_stats
|
||||
result = compute_text_length_stats(["Hola mundo.", "Una frase mas larga aqui."], n_bins=5)
|
||||
tested: true
|
||||
tests:
|
||||
- "test_basico"
|
||||
- "test_vacio"
|
||||
- "test_descarta_none"
|
||||
- "test_un_documento"
|
||||
test_file_path: "python/functions/datascience/compute_text_length_stats_test.py"
|
||||
file_path: "python/functions/datascience/compute_text_length_stats.py"
|
||||
params:
|
||||
- name: texts
|
||||
desc: "List of text documents (str). None entries and any non-str items (ints, floats, etc.) are discarded before any computation. An empty string \"\" is kept (chars 0, words 0, sentences 0)."
|
||||
- name: n_bins
|
||||
desc: "Number of equal-width bins for the per-document word-count histogram. Default 20. When all docs have the same word count, there are <2 docs, or n_bins < 1, a single covering bin is returned instead."
|
||||
output: "Dict with keys n_docs (int), chars, words, sentences and word_hist. Each of the three axis sub-dicts has the exact keys mean (float, 2 decimals), p50, p90, p99, min, max (ints). When there are no valid documents, n_docs is 0, every axis statistic is None and word_hist is []. word_hist is a list of {lo: float, hi: float, count: int} bins; the sum of all bin counts equals n_docs."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.compute_text_length_stats import compute_text_length_stats
|
||||
|
||||
compute_text_length_stats(
|
||||
[
|
||||
"Hola mundo.",
|
||||
"Una frase mas larga con varias palabras aqui.",
|
||||
"Esto. Tiene. Tres frases distintas!",
|
||||
],
|
||||
n_bins=5,
|
||||
)
|
||||
# {
|
||||
# "n_docs": 3,
|
||||
# "chars": {"mean": 30.33, "p50": 35, "p90": 45, "p99": 45, "min": 11, "max": 45},
|
||||
# "words": {"mean": 5.0, "p50": 5, "p90": 8, "p99": 8, "min": 2, "max": 8},
|
||||
# "sentences": {"mean": 1.67, "p50": 1, "p90": 3, "p99": 3, "min": 1, "max": 3},
|
||||
# "word_hist": [
|
||||
# {"lo": 2.0, "hi": 3.2, "count": 1},
|
||||
# {"lo": 3.2, "hi": 4.4, "count": 0},
|
||||
# {"lo": 4.4, "hi": 5.6, "count": 1},
|
||||
# {"lo": 5.6, "hi": 6.8, "count": 0},
|
||||
# {"lo": 6.8, "hi": 8.0, "count": 1},
|
||||
# ],
|
||||
# }
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala al perfilar una columna o corpus de texto libre en un EDA: cuando
|
||||
necesites saber lo largos que son los documentos (en caracteres, palabras y
|
||||
frases) y cómo se reparte esa longitud antes de tokenizar, vectorizar o decidir
|
||||
truncados/ventanas para un modelo. Pásale la lista de strings crudos de la
|
||||
columna; `None` y valores no-texto se descartan solos. Encaja en el grupo `eda`
|
||||
como bloque de longitud junto a `summarize_categorical`.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Función pura, solo stdlib (`re`). No usa numpy, pandas ni sklearn.
|
||||
- Percentiles por método **nearest-rank** (devuelven un valor real de la lista,
|
||||
no interpolan); por eso p50/p90/p99/min/max son enteros y `mean` es el único
|
||||
float (redondeado a 2 decimales).
|
||||
- El conteo de frases es una **aproximación** por puntuación (`.!?…`): un texto
|
||||
sin esa puntuación cuenta como 1 frase si no está vacío; abreviaturas o
|
||||
ellipsis pueden inflar o reducir el conteo.
|
||||
- `word_hist` es equal-width entre min y max de palabras: con todos los docs
|
||||
del mismo tamaño, menos de 2 docs, o `n_bins < 1`, devuelve un único bin.
|
||||
- Dict-no-throw: ante input inesperado devuelve la forma vacía
|
||||
(`n_docs` 0, ejes `None`, `word_hist` []) en vez de lanzar.
|
||||
@@ -0,0 +1,168 @@
|
||||
"""Pure EDA helper: document length distribution for the `eda` group.
|
||||
|
||||
Given a list of text documents, computes the length distribution along three
|
||||
axes (characters, words and sentences) plus an equal-width histogram of the
|
||||
per-document word counts. Stdlib only (``re`` + ``statistics`` semantics via a
|
||||
hand-rolled nearest-rank percentile). No numpy, no sklearn.
|
||||
|
||||
The function is dict-no-throw: it never raises. On any unexpected input it
|
||||
degrades to the empty-shape result.
|
||||
"""
|
||||
|
||||
import math
|
||||
import re
|
||||
|
||||
_WORD_RE = re.compile(r"\w+", re.UNICODE)
|
||||
_SENT_RE = re.compile(r"[.!?…]+")
|
||||
|
||||
|
||||
def _empty_axis() -> dict:
|
||||
"""Return an axis sub-dict with every statistic set to ``None``."""
|
||||
return {"mean": None, "p50": None, "p90": None, "p99": None, "min": None, "max": None}
|
||||
|
||||
|
||||
def _pct(sorted_vals, q):
|
||||
"""Nearest-rank percentile of an already-sorted list.
|
||||
|
||||
Args:
|
||||
sorted_vals: List of numbers sorted ascending.
|
||||
q: Percentile in the 0..100 range.
|
||||
|
||||
Returns:
|
||||
The value at the nearest rank, or ``None`` for an empty list.
|
||||
"""
|
||||
n = len(sorted_vals)
|
||||
if n == 0:
|
||||
return None
|
||||
if q <= 0:
|
||||
return sorted_vals[0]
|
||||
rank = math.ceil(q / 100.0 * n)
|
||||
if rank < 1:
|
||||
rank = 1
|
||||
if rank > n:
|
||||
rank = n
|
||||
return sorted_vals[rank - 1]
|
||||
|
||||
|
||||
def _axis_stats(values) -> dict:
|
||||
"""Compute mean/p50/p90/p99/min/max over a list of integer counts.
|
||||
|
||||
``mean`` is rounded to 2 decimals; every other statistic is an integer
|
||||
(they are counts). Returns an all-``None`` axis for an empty list.
|
||||
"""
|
||||
if not values:
|
||||
return _empty_axis()
|
||||
sv = sorted(values)
|
||||
return {
|
||||
"mean": round(sum(sv) / len(sv), 2),
|
||||
"p50": int(_pct(sv, 50)),
|
||||
"p90": int(_pct(sv, 90)),
|
||||
"p99": int(_pct(sv, 99)),
|
||||
"min": int(sv[0]),
|
||||
"max": int(sv[-1]),
|
||||
}
|
||||
|
||||
|
||||
def _word_hist(word_counts, n_bins) -> list:
|
||||
"""Equal-width histogram of per-document word counts.
|
||||
|
||||
Builds ``n_bins`` bins between ``min`` and ``max`` of the word counts. When
|
||||
every document has the same number of words, there are fewer than 2
|
||||
documents, or ``n_bins`` is not at least 1, a single covering bin is
|
||||
returned. With no documents the result is ``[]``. The sum of bin ``count``
|
||||
always equals ``len(word_counts)``.
|
||||
"""
|
||||
if not word_counts:
|
||||
return []
|
||||
wmin = min(word_counts)
|
||||
wmax = max(word_counts)
|
||||
if wmax == wmin or len(word_counts) < 2 or n_bins < 1:
|
||||
return [{"lo": float(wmin), "hi": float(wmax), "count": len(word_counts)}]
|
||||
|
||||
width = (wmax - wmin) / n_bins
|
||||
bins = []
|
||||
for i in range(n_bins):
|
||||
lo = wmin + i * width
|
||||
hi = wmin + (i + 1) * width
|
||||
bins.append({"lo": float(lo), "hi": float(hi), "count": 0})
|
||||
# Pin the last upper edge to the real maximum to avoid float drift.
|
||||
bins[-1]["hi"] = float(wmax)
|
||||
|
||||
for wc in word_counts:
|
||||
if wc >= wmax:
|
||||
idx = n_bins - 1
|
||||
else:
|
||||
idx = int((wc - wmin) / width)
|
||||
if idx < 0:
|
||||
idx = 0
|
||||
elif idx >= n_bins:
|
||||
idx = n_bins - 1
|
||||
bins[idx]["count"] += 1
|
||||
return bins
|
||||
|
||||
|
||||
def compute_text_length_stats(texts, n_bins=20) -> dict:
|
||||
"""Summarize the length distribution of a corpus of text documents.
|
||||
|
||||
For each document three lengths are measured: characters (``len(doc)``),
|
||||
words (count of ``\\w+`` unicode tokens) and sentences (non-empty segments
|
||||
after splitting on ``.!?…``, with a minimum of 1 for any non-empty
|
||||
document). For each axis the mean, p50, p90, p99, min and max are reported,
|
||||
plus an equal-width histogram of the per-document word counts.
|
||||
|
||||
``None`` entries and any non-``str`` items in ``texts`` are discarded.
|
||||
The function never raises: on empty/``None`` input or any internal error it
|
||||
returns the empty-shape result (``n_docs`` 0, all-``None`` axes, ``[]``
|
||||
histogram).
|
||||
|
||||
Args:
|
||||
texts: List of text documents (``str``). ``None`` and non-``str``
|
||||
items are dropped.
|
||||
n_bins: Number of equal-width bins for the word-count histogram.
|
||||
Default 20.
|
||||
|
||||
Returns:
|
||||
Dict with keys ``n_docs``, ``chars``, ``words``, ``sentences`` and
|
||||
``word_hist``. Each of the three axes is a sub-dict with ``mean``
|
||||
(float, 2 decimals), ``p50``, ``p90``, ``p99``, ``min`` and ``max``
|
||||
(ints), all ``None`` when there are no documents. ``word_hist`` is a
|
||||
list of ``{lo, hi, count}`` bins whose ``count`` sums to ``n_docs``.
|
||||
"""
|
||||
empty_axis = _empty_axis()
|
||||
fallback = {
|
||||
"n_docs": 0,
|
||||
"chars": dict(empty_axis),
|
||||
"words": dict(empty_axis),
|
||||
"sentences": dict(empty_axis),
|
||||
"word_hist": [],
|
||||
}
|
||||
try:
|
||||
if not texts:
|
||||
return fallback
|
||||
|
||||
docs = [t for t in texts if isinstance(t, str)]
|
||||
n_docs = len(docs)
|
||||
if n_docs == 0:
|
||||
return fallback
|
||||
|
||||
char_counts = [len(d) for d in docs]
|
||||
word_counts = [len(_WORD_RE.findall(d)) for d in docs]
|
||||
|
||||
sent_counts = []
|
||||
for d in docs:
|
||||
segments = [s for s in _SENT_RE.split(d) if s.strip()]
|
||||
n = len(segments)
|
||||
if d and n == 0:
|
||||
# Non-empty document with no detectable sentence: count as 1.
|
||||
n = 1
|
||||
sent_counts.append(n)
|
||||
|
||||
return {
|
||||
"n_docs": n_docs,
|
||||
"chars": _axis_stats(char_counts),
|
||||
"words": _axis_stats(word_counts),
|
||||
"sentences": _axis_stats(sent_counts),
|
||||
"word_hist": _word_hist(word_counts, n_bins),
|
||||
}
|
||||
except Exception:
|
||||
return fallback
|
||||
@@ -0,0 +1,70 @@
|
||||
"""Tests para compute_text_length_stats.
|
||||
|
||||
Inserta `python/functions` en sys.path (relativo a este archivo) para importar
|
||||
el modulo hoja por su paquete `datascience`, sin depender de que el paquete lo
|
||||
reexporte en su __init__.
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
|
||||
|
||||
from datascience.compute_text_length_stats import compute_text_length_stats
|
||||
|
||||
|
||||
def test_basico():
|
||||
"""Varios textos de longitudes distintas: stats y histograma coherentes."""
|
||||
texts = [
|
||||
"Hola mundo.", # 2 words, 1 sentence
|
||||
"Una frase mas larga con varias palabras aqui.", # 8 words, 1 sentence
|
||||
"Corto.", # 1 word, 1 sentence
|
||||
"Esto. Tiene. Tres frases distintas!", # 5 words, 3 sentences
|
||||
]
|
||||
result = compute_text_length_stats(texts)
|
||||
|
||||
assert result["n_docs"] == 4
|
||||
# Diferentes longitudes en palabras -> max estrictamente mayor que min.
|
||||
assert result["words"]["max"] > result["words"]["min"]
|
||||
# El histograma de palabras no esta vacio.
|
||||
assert result["word_hist"] != []
|
||||
# La suma de counts del histograma cubre todos los documentos.
|
||||
assert sum(b["count"] for b in result["word_hist"]) == result["n_docs"]
|
||||
# mean es float redondeado; min/max son enteros.
|
||||
assert isinstance(result["words"]["mean"], float)
|
||||
assert isinstance(result["words"]["min"], int)
|
||||
assert isinstance(result["words"]["max"], int)
|
||||
# El documento con 3 frases empuja el max de sentences a >= 3.
|
||||
assert result["sentences"]["max"] >= 3
|
||||
|
||||
|
||||
def test_vacio():
|
||||
"""Lista vacia: n_docs 0, subdicts None, word_hist []."""
|
||||
result = compute_text_length_stats([])
|
||||
assert result["n_docs"] == 0
|
||||
for axis in ("chars", "words", "sentences"):
|
||||
for key in ("mean", "p50", "p90", "p99", "min", "max"):
|
||||
assert result[axis][key] is None
|
||||
assert result["word_hist"] == []
|
||||
|
||||
|
||||
def test_descarta_none():
|
||||
"""None y valores no-str se descartan del computo."""
|
||||
result = compute_text_length_stats(["hello world", None, 123, 4.5, "foo bar baz"])
|
||||
# Solo dos strings validos.
|
||||
assert result["n_docs"] == 2
|
||||
assert result["words"]["min"] == 2 # "hello world"
|
||||
assert result["words"]["max"] == 3 # "foo bar baz"
|
||||
assert sum(b["count"] for b in result["word_hist"]) == 2
|
||||
|
||||
|
||||
def test_un_documento():
|
||||
"""Un solo documento: word_hist tiene exactamente un bin con count 1."""
|
||||
result = compute_text_length_stats(["solo un documento aqui"])
|
||||
assert result["n_docs"] == 1
|
||||
assert len(result["word_hist"]) == 1
|
||||
assert result["word_hist"][0]["count"] == 1
|
||||
# Con un unico documento, p50 == min == max == su numero de palabras (4).
|
||||
assert result["words"]["min"] == 4
|
||||
assert result["words"]["max"] == 4
|
||||
assert result["words"]["p50"] == 4
|
||||
@@ -0,0 +1,88 @@
|
||||
---
|
||||
id: compute_text_readability_py_datascience
|
||||
name: compute_text_readability
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def compute_text_readability(texts, sample_max=500) -> dict"
|
||||
description: "Calcula la legibilidad Flesch Reading Ease de un corpus de texto usando textstat con import perezoso y degradación. Filtra None/no-str/vacíos, muestrea hasta sample_max documentos (los primeros) y agrega los scores Flesch en {mean, p50, min, max}. Si textstat no está instalada devuelve available=False sin lanzar. Estilo dict-no-throw del grupo eda — nunca lanza."
|
||||
tags: [eda, datascience, text, nlp, readability, flesch, textstat, pure, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: [math, textstat]
|
||||
example: |
|
||||
from datascience.compute_text_readability import compute_text_readability
|
||||
out = compute_text_readability(["The cat sat on the mat. It was warm and sunny."])
|
||||
# {"available": True, "n_scored": 1, "flesch": {"mean": 109.0, "p50": 109.0, "min": 108.96..., "max": 108.96...}}
|
||||
tested: true
|
||||
tests:
|
||||
- "test_prosa_ingles"
|
||||
- "test_vacio"
|
||||
- "test_degradacion"
|
||||
test_file_path: "python/functions/datascience/compute_text_readability_test.py"
|
||||
file_path: "python/functions/datascience/compute_text_readability.py"
|
||||
params:
|
||||
- name: texts
|
||||
desc: "Lista de str (documentos del corpus). Los elementos None, no-str o vacíos tras strip() se descartan silenciosamente. El orden se respeta: el muestreo toma los primeros documentos válidos."
|
||||
- name: sample_max
|
||||
desc: "Número máximo de documentos válidos a puntuar (los primeros). Default 500. Acota el coste en corpus grandes. Valores no convertibles a int caen a 500; negativos se tratan como 0."
|
||||
output: "Dict con exactamente 3 claves siempre presentes: available (bool: True si textstat se pudo importar), n_scored (int: nº de documentos efectivamente puntuados), flesch (dict con mean, p50, min, max). mean y p50 redondeados a 1 decimal; p50 por nearest-rank sobre los scores ordenados; min/max son los scores extremos sin redondear. Todos los valores de flesch son None cuando n_scored es 0. La función nunca lanza: cualquier excepción global (incluida ImportError de textstat) degrada a available=False, n_scored=0 y flesch todo None."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.compute_text_readability import compute_text_readability
|
||||
|
||||
textos = [
|
||||
"The cat sat on the mat. It was a warm and sunny day in the park.",
|
||||
"Reading is a wonderful habit. Books open doors to new worlds and ideas.",
|
||||
"He ran quickly to the store to buy some fresh bread and a bottle of milk.",
|
||||
]
|
||||
|
||||
compute_text_readability(textos)
|
||||
# {
|
||||
# "available": True,
|
||||
# "n_scored": 3,
|
||||
# "flesch": {"mean": 91.4, "p50": 95.4, "min": 70.08..., "max": 108.83...}
|
||||
# }
|
||||
|
||||
# Corpus vacío (textstat presente): available True pero nada que puntuar.
|
||||
compute_text_readability([])
|
||||
# {"available": True, "n_scored": 0,
|
||||
# "flesch": {"mean": None, "p50": None, "min": None, "max": None}}
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala en un EDA de texto cuando necesites una métrica única y comparable de
|
||||
**lo fácil que es de leer** un corpus de documentos (descripciones, reviews,
|
||||
artículos, tickets). Devuelve el resumen Flesch Reading Ease agregado
|
||||
(`mean`/`p50`/`min`/`max`) listo para un report o un bloque del notebook, sin
|
||||
tener que iterar `textstat` a mano. Pásale la lista de textos crudos y, si el
|
||||
corpus es grande, limita el coste con `sample_max`. El estilo dict-no-throw
|
||||
permite incrustarla en pipelines del grupo `eda` sin envolver en try/except.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **`textstat` es una dependencia opcional.** Si no está instalada (o falla al
|
||||
importar) la función NO lanza: devuelve `available=False`, `n_scored=0` y
|
||||
`flesch` todo `None`. Comprueba `available` antes de interpretar los números.
|
||||
- **Flesch Reading Ease está pensado para prosa en inglés.** Aplicado a otros
|
||||
idiomas o a texto no-prosa (código, listas, tablas, cadenas muy cortas) los
|
||||
scores no son interpretables, aunque se calculen sin error.
|
||||
- **Escala Flesch:** valores **altos** = más fácil de leer (≈90–100 muy fácil),
|
||||
valores **bajos** = más difícil (puede ser negativo en texto muy denso). No
|
||||
se recortan a ningún rango: se reportan tal cual los devuelve `textstat`.
|
||||
- **`available=True` con `n_scored=0`** significa que `textstat` está presente
|
||||
pero el corpus no aportó documentos puntuables (vacío, solo None/no-str, o
|
||||
todos los docs fallaron al puntuar). Es distinto de `available=False`.
|
||||
- **Muestreo = los primeros `sample_max`**, no aleatorio. Si el orden del corpus
|
||||
está sesgado, el resumen reflejará ese sesgo.
|
||||
- **`mean` y `p50` redondean a 1 decimal**; `min`/`max` se devuelven sin
|
||||
redondear (los scores extremos reales).
|
||||
@@ -0,0 +1,121 @@
|
||||
"""Legibilidad Flesch Reading Ease de un corpus de texto.
|
||||
|
||||
Función pura del grupo `eda`, estilo dict-no-throw: nunca lanza. Usa la
|
||||
librería `textstat` con import perezoso y degradación: si `textstat` no está
|
||||
instalada (o falla al importar), devuelve un resultado con `available=False`
|
||||
en lugar de propagar el error.
|
||||
"""
|
||||
|
||||
|
||||
def _percentile_nearest_rank(sorted_values, pct):
|
||||
"""Percentil por nearest-rank sobre una lista ya ordenada ascendente.
|
||||
|
||||
rank = ceil(pct/100 * n); índice 1-based recortado a [1, n].
|
||||
Devuelve None si la lista está vacía.
|
||||
"""
|
||||
n = len(sorted_values)
|
||||
if n == 0:
|
||||
return None
|
||||
import math
|
||||
|
||||
rank = math.ceil((pct / 100.0) * n)
|
||||
if rank < 1:
|
||||
rank = 1
|
||||
if rank > n:
|
||||
rank = n
|
||||
return sorted_values[rank - 1]
|
||||
|
||||
|
||||
def compute_text_readability(texts, sample_max=500) -> dict:
|
||||
"""Calcula la legibilidad Flesch Reading Ease de un corpus.
|
||||
|
||||
Args:
|
||||
texts: lista de str. Los elementos None, no-str o vacíos (tras strip)
|
||||
se descartan. Se muestrean los primeros `sample_max` documentos
|
||||
válidos.
|
||||
sample_max: número máximo de documentos a puntuar (los primeros).
|
||||
|
||||
Returns:
|
||||
Dict con la forma exacta::
|
||||
|
||||
{"available": bool, "n_scored": int,
|
||||
"flesch": {"mean": float|None, "p50": float|None,
|
||||
"min": float|None, "max": float|None}}
|
||||
|
||||
`available` es True si `textstat` se pudo importar. La función nunca
|
||||
lanza: cualquier excepción global degrada a `available=False`.
|
||||
"""
|
||||
empty = {
|
||||
"available": False,
|
||||
"n_scored": 0,
|
||||
"flesch": {"mean": None, "p50": None, "min": None, "max": None},
|
||||
}
|
||||
try:
|
||||
# Import perezoso con degradación: textstat es una dependencia opcional.
|
||||
try:
|
||||
import textstat
|
||||
except Exception:
|
||||
return {
|
||||
"available": False,
|
||||
"n_scored": 0,
|
||||
"flesch": {"mean": None, "p50": None, "min": None, "max": None},
|
||||
}
|
||||
|
||||
# Filtrar y muestrear documentos válidos (los primeros sample_max).
|
||||
docs = []
|
||||
if texts is not None:
|
||||
try:
|
||||
limit = int(sample_max)
|
||||
except Exception:
|
||||
limit = 500
|
||||
if limit < 0:
|
||||
limit = 0
|
||||
for item in texts:
|
||||
if not isinstance(item, str):
|
||||
continue
|
||||
if item.strip() == "":
|
||||
continue
|
||||
docs.append(item)
|
||||
if len(docs) >= limit:
|
||||
break
|
||||
|
||||
scores = []
|
||||
for doc in docs:
|
||||
try:
|
||||
score = textstat.flesch_reading_ease(doc)
|
||||
except Exception:
|
||||
continue
|
||||
try:
|
||||
score = float(score)
|
||||
except Exception:
|
||||
continue
|
||||
scores.append(score)
|
||||
|
||||
n_scored = len(scores)
|
||||
if n_scored == 0:
|
||||
# textstat presente pero corpus vacío / sin puntuar.
|
||||
return {
|
||||
"available": True,
|
||||
"n_scored": 0,
|
||||
"flesch": {"mean": None, "p50": None, "min": None, "max": None},
|
||||
}
|
||||
|
||||
mean_val = round(sum(scores) / n_scored, 1)
|
||||
sorted_scores = sorted(scores)
|
||||
p50_raw = _percentile_nearest_rank(sorted_scores, 50)
|
||||
p50_val = round(p50_raw, 1) if p50_raw is not None else None
|
||||
min_val = sorted_scores[0]
|
||||
max_val = sorted_scores[-1]
|
||||
|
||||
return {
|
||||
"available": True,
|
||||
"n_scored": n_scored,
|
||||
"flesch": {
|
||||
"mean": mean_val,
|
||||
"p50": p50_val,
|
||||
"min": min_val,
|
||||
"max": max_val,
|
||||
},
|
||||
}
|
||||
except Exception:
|
||||
return empty
|
||||
@@ -0,0 +1,74 @@
|
||||
"""Tests para compute_text_readability."""
|
||||
|
||||
import sys
|
||||
import os
|
||||
import builtins
|
||||
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", ".."))
|
||||
|
||||
from datascience.compute_text_readability import compute_text_readability
|
||||
|
||||
|
||||
EXPECTED_KEYS = {"available", "n_scored", "flesch"}
|
||||
FLESCH_KEYS = {"mean", "p50", "min", "max"}
|
||||
|
||||
|
||||
def test_prosa_ingles():
|
||||
"""Varios textos en prosa inglesa: available True, n_scored>0, mean no None."""
|
||||
texts = [
|
||||
"The cat sat on the mat. It was a warm and sunny day in the park.",
|
||||
"She sells sea shells by the sea shore. The shells she sells are surely sea shells.",
|
||||
"Reading is a wonderful habit. Books open doors to new worlds and ideas.",
|
||||
"He ran quickly to the store to buy some fresh bread and a bottle of milk.",
|
||||
]
|
||||
out = compute_text_readability(texts)
|
||||
|
||||
assert set(out.keys()) == EXPECTED_KEYS
|
||||
assert out["available"] is True
|
||||
assert out["n_scored"] > 0
|
||||
assert set(out["flesch"].keys()) == FLESCH_KEYS
|
||||
assert out["flesch"]["mean"] is not None
|
||||
assert out["flesch"]["p50"] is not None
|
||||
assert out["flesch"]["min"] is not None
|
||||
assert out["flesch"]["max"] is not None
|
||||
# min <= mean/p50 <= max coherente.
|
||||
assert out["flesch"]["min"] <= out["flesch"]["max"]
|
||||
|
||||
|
||||
def test_vacio():
|
||||
"""Corpus vacío con textstat presente: available True, n_scored 0, flesch None."""
|
||||
out = compute_text_readability([])
|
||||
|
||||
assert set(out.keys()) == EXPECTED_KEYS
|
||||
assert out["available"] is True
|
||||
assert out["n_scored"] == 0
|
||||
assert out["flesch"]["mean"] is None
|
||||
assert out["flesch"]["p50"] is None
|
||||
assert out["flesch"]["min"] is None
|
||||
assert out["flesch"]["max"] is None
|
||||
|
||||
# Elementos no-str / vacíos también se descartan -> n_scored 0.
|
||||
out2 = compute_text_readability([None, "", " ", 123])
|
||||
assert out2["available"] is True
|
||||
assert out2["n_scored"] == 0
|
||||
|
||||
|
||||
def test_degradacion(monkeypatch):
|
||||
"""Sin textstat (ImportError forzado): degrada a available False sin lanzar."""
|
||||
import datascience.compute_text_readability as m
|
||||
|
||||
real = builtins.__import__
|
||||
|
||||
def fake(name, *a, **k):
|
||||
if name == "textstat" or name.startswith("textstat."):
|
||||
raise ImportError("simulado")
|
||||
return real(name, *a, **k)
|
||||
|
||||
monkeypatch.setattr(builtins, "__import__", fake)
|
||||
out = m.compute_text_readability(["The cat sat on the mat. It was happy and warm."])
|
||||
assert out["available"] is False
|
||||
assert out["n_scored"] == 0
|
||||
assert out["flesch"]["mean"] is None
|
||||
assert out["flesch"]["p50"] is None
|
||||
assert out["flesch"]["min"] is None
|
||||
assert out["flesch"]["max"] is None
|
||||
@@ -0,0 +1,103 @@
|
||||
---
|
||||
id: compute_top_ngrams_py_datascience
|
||||
name: compute_top_ngrams
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def compute_top_ngrams(texts, n=2, top_k=15, remove_stopwords=True) -> dict"
|
||||
description: "Calcula los n-gramas de palabras más frecuentes de un corpus de texto (n=1 unigramas, 2 bigramas, 3 trigramas...). Tokeniza a minúsculas con re.findall(r'\\w+', ...), descarta tokens numéricos y, si remove_stopwords=True, elimina stopwords ES+EN ANTES de formar los n-gramas (n-gramas contiguos sobre la secuencia de tokens de contenido, sin cruzar documentos). Pura y autocontenida con collections.Counter, sin sklearn. Estilo dict-no-throw del grupo eda: nunca lanza."
|
||||
tags: [eda, datascience, text, nlp, ngrams, bigrams, trigrams, pure, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: [re, collections]
|
||||
example: |
|
||||
from datascience.compute_top_ngrams import compute_top_ngrams
|
||||
texts = ["machine learning rocks", "we love machine learning"]
|
||||
compute_top_ngrams(texts, n=2, top_k=5)
|
||||
# {"n": 2, "top": [{"ngram": "machine learning", "count": 2}, ...]}
|
||||
tested: true
|
||||
tests:
|
||||
- "test_bigramas"
|
||||
- "test_trigramas"
|
||||
- "test_vacio"
|
||||
- "test_stopwords"
|
||||
test_file_path: "python/functions/datascience/compute_top_ngrams_test.py"
|
||||
file_path: "python/functions/datascience/compute_top_ngrams.py"
|
||||
params:
|
||||
- name: texts
|
||||
desc: "Lista (o tupla) de cadenas. Los elementos None o que no sean str se descartan silenciosamente. Cada documento se tokeniza por separado; los n-gramas no cruzan la frontera entre documentos."
|
||||
- name: n
|
||||
desc: "Tamaño del n-grama: 1 unigramas, 2 bigramas, 3 trigramas, etc. Valores < 1 o no enteros producen top vacío (se conserva tal cual en la clave 'n' del retorno)."
|
||||
- name: top_k
|
||||
desc: "Número máximo de n-gramas a devolver, ordenados por frecuencia descendente con desempate alfabético determinista. Default 15. Valores negativos se tratan como 0."
|
||||
- name: remove_stopwords
|
||||
desc: "Si True (default) elimina las stopwords ES+EN de una lista inline (~130 términos de altísima frecuencia) ANTES de formar los n-gramas, de modo que los n-gramas se construyen sobre la secuencia de tokens de contenido."
|
||||
output: "Dict con exactamente 2 claves: n (el n recibido, sin normalizar) y top (lista de dicts {'ngram': str, 'count': int} ordenada por count descendente, longitud <= top_k). ngram es la unión de los tokens del n-grama por un espacio. Corpus vacío, tokens insuficientes para formar n-gramas o cualquier excepción interna degradan a {'n': n, 'top': []}. La función nunca lanza."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.compute_top_ngrams import compute_top_ngrams
|
||||
|
||||
texts = [
|
||||
"machine learning rocks",
|
||||
"machine learning is fun",
|
||||
"we love machine learning",
|
||||
]
|
||||
|
||||
# Bigramas (n=2): "machine learning" aparece en los 3 documentos.
|
||||
compute_top_ngrams(texts, n=2, top_k=5)
|
||||
# {
|
||||
# "n": 2,
|
||||
# "top": [
|
||||
# {"ngram": "machine learning", "count": 3},
|
||||
# {"ngram": "learning fun", "count": 1},
|
||||
# {"ngram": "learning rocks", "count": 1},
|
||||
# {"ngram": "love machine", "count": 1},
|
||||
# ],
|
||||
# }
|
||||
|
||||
# Unigramas con stopwords fuera (default): solo palabras de contenido.
|
||||
compute_top_ngrams(["the cat sat on the mat"], n=1, top_k=3)
|
||||
# {"n": 1, "top": [{"ngram": "cat", "count": 1},
|
||||
# {"ngram": "mat", "count": 1},
|
||||
# {"ngram": "sat", "count": 1}]}
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala en la fase de EDA de texto cuando, además del vocabulario suelto, necesites
|
||||
ver qué **combinaciones de palabras contiguas** dominan un corpus: colocaciones,
|
||||
frases técnicas recurrentes ("machine learning", "data analyst"), o patrones de
|
||||
trigramas en titulares/descripciones. Es el complemento natural de un perfil de
|
||||
vocabulario: pasa de "qué palabras aparecen" a "qué secuencias aparecen". Llámala
|
||||
con `n=1` para unigramas, `n=2` para bigramas y `n=3` para trigramas, y ajusta
|
||||
`top_k` al tamaño de la tabla que vas a renderizar. Deja `remove_stopwords=True`
|
||||
para que los n-gramas reflejen contenido y no conectores gramaticales.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Las stopwords se eliminan ANTES de formar los n-gramas.** Con
|
||||
`remove_stopwords=True` la frase "data of analysis" produce el bigrama
|
||||
"data analysis" (el "of" intermedio desaparece y los tokens de contenido se
|
||||
vuelven contiguos), no "data of" ni "of analysis". Si quieres preservar la
|
||||
adyacencia literal del texto original, pasa `remove_stopwords=False`.
|
||||
- **Los n-gramas NO cruzan documentos.** Cada elemento de `texts` se tokeniza y
|
||||
recorre por separado; el último token de un documento nunca se combina con el
|
||||
primero del siguiente.
|
||||
- **Tokens puramente numéricos se descartan** (`tok.isdigit()`), pero los
|
||||
alfanuméricos mixtos no: "3d" o "covid19" sí cuentan como tokens. Un decimal
|
||||
como "3.5" se parte en "3" y "5" por `\w+` y ambos se descartan por numéricos.
|
||||
- **La lista de stopwords es inline ES+EN**, pensada para textos generales en
|
||||
esos dos idiomas. Para otros idiomas o jerga específica de dominio puede dejar
|
||||
pasar conectores; en ese caso filtra el corpus aguas arriba o usa
|
||||
`remove_stopwords=False` y posfiltra.
|
||||
- **`top` puede tener menos de `top_k` elementos** si el corpus no tiene tantos
|
||||
n-gramas distintos. El desempate por frecuencia es alfabético (determinista),
|
||||
no por orden de aparición.
|
||||
@@ -0,0 +1,94 @@
|
||||
"""Top n-gramas de palabras más frecuentes de un corpus de texto.
|
||||
|
||||
Función pura, autocontenida (solo stdlib: re + collections.Counter). No depende
|
||||
de scikit-learn ni de ninguna otra librería externa. Estilo dict-no-throw del
|
||||
grupo `eda`: ante cualquier entrada degenerada o excepción interna devuelve
|
||||
``{"n": n, "top": []}`` en vez de lanzar.
|
||||
"""
|
||||
|
||||
import re
|
||||
from collections import Counter
|
||||
|
||||
# Lista inline de stopwords ES + EN (~80 términos de altísima frecuencia).
|
||||
# Se eliminan ANTES de formar los n-gramas: los n-gramas se construyen sobre la
|
||||
# secuencia de tokens de contenido, no sobre el texto original.
|
||||
_STOPWORDS = frozenset({
|
||||
# Español
|
||||
"de", "la", "que", "el", "en", "y", "a", "los", "del", "se", "las", "por",
|
||||
"un", "para", "con", "no", "una", "su", "al", "lo", "como", "más", "mas",
|
||||
"pero", "sus", "le", "ya", "o", "este", "sí", "si", "porque", "esta",
|
||||
"entre", "cuando", "muy", "sin", "sobre", "también", "tambien", "me",
|
||||
"hasta", "hay", "donde", "quien", "desde", "todo", "nos", "durante",
|
||||
"todos", "uno", "les", "ni", "contra", "otros", "ese", "eso", "ante",
|
||||
"ellos", "e", "esto", "mí", "antes", "algunos", "qué", "unos", "yo",
|
||||
"otro", "otras", "otra", "él", "tanto", "esa", "estos", "mucho", "quienes",
|
||||
"nada", "muchos", "cual", "poco", "ella", "estar", "estas", "algunas",
|
||||
"algo", "nosotros",
|
||||
# Inglés
|
||||
"the", "of", "and", "to", "in", "is", "it", "for", "on", "with", "as",
|
||||
"are", "was", "be", "this", "that", "by", "an", "or", "at", "from", "but",
|
||||
"not", "have", "has", "had", "they", "you", "we", "he", "she", "his",
|
||||
"her", "their", "its", "i", "my", "me", "our", "us", "do", "does", "did",
|
||||
"will", "would", "can", "could", "should", "there", "which", "who", "what",
|
||||
"when", "where", "how", "all", "if", "so", "than", "then", "out", "up",
|
||||
})
|
||||
|
||||
|
||||
def compute_top_ngrams(texts, n=2, top_k=15, remove_stopwords=True) -> dict:
|
||||
"""Calcula los n-gramas de palabras más frecuentes de un corpus.
|
||||
|
||||
Args:
|
||||
texts: lista de cadenas. Los elementos ``None`` o que no sean ``str`` se
|
||||
descartan silenciosamente.
|
||||
n: tamaño del n-grama (1 = unigramas, 2 = bigramas, 3 = trigramas...).
|
||||
Valores < 1 o no enteros producen ``top`` vacío.
|
||||
top_k: número máximo de n-gramas a devolver, ordenados por frecuencia
|
||||
descendente (con desempate alfabético determinista).
|
||||
remove_stopwords: si ``True`` elimina las stopwords ES+EN ANTES de
|
||||
formar los n-gramas, de modo que los n-gramas se construyen sobre la
|
||||
secuencia de tokens de contenido (no cruzando documentos).
|
||||
|
||||
Returns:
|
||||
``{"n": n, "top": [{"ngram": "w1 w2", "count": int}, ...]}``. Corpus
|
||||
vacío, sin tokens suficientes o cualquier excepción interna degrada a
|
||||
``{"n": n, "top": []}``. Nunca lanza.
|
||||
"""
|
||||
try:
|
||||
if not isinstance(n, int) or n < 1:
|
||||
return {"n": n, "top": []}
|
||||
|
||||
try:
|
||||
limit = int(top_k)
|
||||
except (TypeError, ValueError):
|
||||
limit = 0
|
||||
if limit < 0:
|
||||
limit = 0
|
||||
|
||||
if not isinstance(texts, (list, tuple)):
|
||||
return {"n": n, "top": []}
|
||||
|
||||
counter = Counter()
|
||||
for doc in texts:
|
||||
if not isinstance(doc, str):
|
||||
continue
|
||||
tokens = [
|
||||
tok
|
||||
for tok in re.findall(r"\w+", doc.lower(), re.UNICODE)
|
||||
if not tok.isdigit()
|
||||
]
|
||||
if remove_stopwords:
|
||||
tokens = [tok for tok in tokens if tok not in _STOPWORDS]
|
||||
if len(tokens) < n:
|
||||
continue
|
||||
for i in range(len(tokens) - n + 1):
|
||||
ngram = " ".join(tokens[i:i + n])
|
||||
counter[ngram] += 1
|
||||
|
||||
if not counter:
|
||||
return {"n": n, "top": []}
|
||||
|
||||
ordered = sorted(counter.items(), key=lambda kv: (-kv[1], kv[0]))
|
||||
top = [{"ngram": ngram, "count": count} for ngram, count in ordered[:limit]]
|
||||
return {"n": n, "top": top}
|
||||
except Exception:
|
||||
return {"n": n, "top": []}
|
||||
@@ -0,0 +1,65 @@
|
||||
"""Tests para compute_top_ngrams."""
|
||||
|
||||
import sys
|
||||
import os
|
||||
|
||||
# sys.path estándar: añade `python/functions/` para importar por paquete raíz.
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", ".."))
|
||||
|
||||
from datascience.compute_top_ngrams import compute_top_ngrams
|
||||
|
||||
|
||||
def test_bigramas():
|
||||
# "machine learning" se repite en cada documento -> bigrama más frecuente.
|
||||
texts = [
|
||||
"machine learning rocks",
|
||||
"machine learning is fun",
|
||||
"we love machine learning",
|
||||
]
|
||||
result = compute_top_ngrams(texts, n=2, top_k=5)
|
||||
assert result["n"] == 2
|
||||
assert result["top"], "esperaba al menos un bigrama"
|
||||
assert result["top"][0]["ngram"] == "machine learning"
|
||||
assert result["top"][0]["count"] == 3
|
||||
# Cada entrada respeta el contrato {"ngram": str, "count": int}.
|
||||
for item in result["top"]:
|
||||
assert isinstance(item["ngram"], str)
|
||||
assert isinstance(item["count"], int)
|
||||
|
||||
|
||||
def test_trigramas():
|
||||
texts = [
|
||||
"alpha beta gamma delta",
|
||||
"alpha beta gamma omega",
|
||||
]
|
||||
# Con stopwords desactivadas para no descartar tokens de contenido.
|
||||
result = compute_top_ngrams(texts, n=3, top_k=5, remove_stopwords=False)
|
||||
assert result["n"] == 3
|
||||
ngrams = {item["ngram"]: item["count"] for item in result["top"]}
|
||||
# "alpha beta gamma" aparece en ambos documentos.
|
||||
assert ngrams.get("alpha beta gamma") == 2
|
||||
# Trigramas únicos de cada documento.
|
||||
assert ngrams.get("beta gamma delta") == 1
|
||||
assert ngrams.get("beta gamma omega") == 1
|
||||
|
||||
|
||||
def test_vacio():
|
||||
assert compute_top_ngrams([], n=2) == {"n": 2, "top": []}
|
||||
# Documentos no-str / None se descartan -> corpus efectivamente vacío.
|
||||
assert compute_top_ngrams([None, 123, {"a": 1}], n=2) == {"n": 2, "top": []}
|
||||
|
||||
|
||||
def test_stopwords():
|
||||
# "the cat" debería desaparecer al quitar stopwords ("the" es stopword EN).
|
||||
texts = ["the cat the cat the cat"]
|
||||
con = compute_top_ngrams(texts, n=2, top_k=10, remove_stopwords=True)
|
||||
sin = compute_top_ngrams(texts, n=2, top_k=10, remove_stopwords=False)
|
||||
|
||||
con_ngrams = {item["ngram"] for item in con["top"]}
|
||||
sin_ngrams = {item["ngram"] for item in sin["top"]}
|
||||
|
||||
# Sin filtrar, el bigrama dominante es "the cat".
|
||||
assert "the cat" in sin_ngrams
|
||||
# Al filtrar stopwords, ya no aparece "the cat" (queda solo "cat cat").
|
||||
assert "the cat" not in con_ngrams
|
||||
assert con_ngrams != sin_ngrams
|
||||
@@ -0,0 +1,91 @@
|
||||
---
|
||||
id: compute_vocabulary_stats_py_datascience
|
||||
name: compute_vocabulary_stats
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def compute_vocabulary_stats(texts: list, top_k: int = 20, remove_stopwords: bool = True) -> dict"
|
||||
description: "Profiles the vocabulary of a text corpus for EDA: tokenises a list of documents, counts term frequencies and derives lexical-richness measures — total tokens, unique types, type-token ratio (TTR), hapax legomena and the top-k most frequent terms. Pure, stdlib only (re + collections.Counter); no nltk, no sklearn. Inline ES+EN stopword list, opt-out via remove_stopwords. Never raises: empty/degenerate input returns the zeroed result."
|
||||
tags: [eda, datascience, text, nlp, vocabulary, ttr, hapax, pure, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: [re, collections]
|
||||
example: |
|
||||
from datascience.compute_vocabulary_stats import compute_vocabulary_stats
|
||||
result = compute_vocabulary_stats(["el gato y el perro", "gato veloz"], top_k=5)
|
||||
tested: true
|
||||
tests:
|
||||
- "test_basico"
|
||||
- "test_vacio"
|
||||
- "test_stopwords_quitadas"
|
||||
- "test_stopwords_conservadas"
|
||||
test_file_path: "python/functions/datascience/compute_vocabulary_stats_test.py"
|
||||
file_path: "python/functions/datascience/compute_vocabulary_stats.py"
|
||||
params:
|
||||
- name: texts
|
||||
desc: "List of documents (strings) forming the corpus. Entries that are None or not a str are silently discarded. Tokens are extracted per document with re.findall(r'\\w+', doc.lower(), re.UNICODE); purely numeric tokens (tok.isdigit()) are dropped."
|
||||
- name: top_k
|
||||
desc: "Maximum number of most-frequent terms to return in top_terms. Default 20. Does not affect n_tokens/n_types/ttr/hapax — only the length of the top_terms list."
|
||||
- name: remove_stopwords
|
||||
desc: "When True (default) common Spanish+English stopwords from the inline _STOPWORDS set (~120 entries) are removed from the token stream before any counting. Set False to keep every word (raw lexical profile)."
|
||||
output: "Dict with the exact keys n_tokens (int), n_types (int), ttr (float|None, n_types/n_tokens rounded to 4 dp), n_hapax (int, terms occurring exactly once), hapax_pct (float|None, n_hapax/n_types*100 rounded to 2 dp) and top_terms (list of {term, count, pct} sorted by count descending, pct = count/n_tokens*100 rounded to 2 dp). For an empty corpus (no tokens after filtering): n_tokens=0, n_types=0, ttr=None, n_hapax=0, hapax_pct=None, top_terms=[]. Any exception degrades to that same empty result — the function never throws."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.compute_vocabulary_stats import compute_vocabulary_stats
|
||||
|
||||
compute_vocabulary_stats(
|
||||
["el gato y el perro", "gato veloz corre", "perro perro perro"],
|
||||
top_k=5,
|
||||
)
|
||||
# {
|
||||
# "n_tokens": 6, # stopwords (el, y) eliminadas por defecto
|
||||
# "n_types": 3, # gato, perro, veloz, corre -> tras quitar stopwords
|
||||
# "ttr": 0.5, # n_types / n_tokens
|
||||
# "n_hapax": 2, # veloz, corre (1 aparicion cada uno)
|
||||
# "hapax_pct": 50.0, # n_hapax / n_types * 100
|
||||
# "top_terms": [
|
||||
# {"term": "perro", "count": 4, "pct": 44.44},
|
||||
# {"term": "gato", "count": 2, "pct": 22.22},
|
||||
# ...
|
||||
# ],
|
||||
# }
|
||||
|
||||
# Perfil lexico crudo (sin filtrar stopwords):
|
||||
compute_vocabulary_stats(["the cat and the dog"], remove_stopwords=False)
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala al perfilar una columna o corpus de texto libre en un EDA del grupo `eda`:
|
||||
cuando necesites medir la riqueza léxica (cuántos tokens y cuántas palabras
|
||||
distintas, type-token ratio, porcentaje de palabras que solo aparecen una vez) y
|
||||
ver qué términos dominan el vocabulario (top-k frecuencias). Pásale la lista de
|
||||
documentos crudos (filas de la columna); `None` y valores no-string se ignoran
|
||||
solos. Es el equivalente para texto largo de `summarize_categorical`, que perfila
|
||||
categorías cortas.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Función pura y stdlib-only, pero el resultado depende del **idioma**: la lista
|
||||
`_STOPWORDS` cubre español e inglés. Para otros idiomas pon
|
||||
`remove_stopwords=False` o filtra fuera, o el perfil mezclará stopwords no
|
||||
reconocidas en `top_terms`.
|
||||
- La tokenización es `\w+` con `re.UNICODE`: separa por puntuación y conserva
|
||||
acentos/ñ, pero NO hace stemming ni lematización — "gato" y "gatos" cuentan
|
||||
como tipos distintos. Tampoco hace stripping de acentos, así que "más" (con
|
||||
tilde) y "mas" son tokens diferentes (ambos están en la stoplist).
|
||||
- Los tokens **puramente numéricos** (`"123"`) se descartan siempre; un token
|
||||
alfanumérico mixto (`"covid19"`) se conserva.
|
||||
- `ttr` baja artificialmente en corpus grandes (más texto, más repetición): no
|
||||
compares TTR entre corpus de tamaños muy distintos sin normalizar.
|
||||
- Nunca lanza: entrada vacía, `None`, o cualquier excepción interna devuelven el
|
||||
resultado con ceros/`None`/`[]`. Comprueba `n_tokens == 0` para detectar el
|
||||
caso degenerado.
|
||||
@@ -0,0 +1,99 @@
|
||||
"""Profile the vocabulary of a text corpus for EDA (pure, stdlib only).
|
||||
|
||||
Tokenises a list of documents, counts term frequencies and derives lexical
|
||||
richness measures (type-token ratio, hapax legomena) plus the top-k terms.
|
||||
No external NLP dependencies (no nltk, no sklearn) — only ``re`` and
|
||||
``collections`` from the standard library.
|
||||
"""
|
||||
|
||||
import re
|
||||
from collections import Counter
|
||||
|
||||
# Common Spanish + English stopwords. Inline, lowercase, no accents stripped
|
||||
# beyond what already appears here. Filtering is opt-in via remove_stopwords.
|
||||
_STOPWORDS = {
|
||||
# Spanish
|
||||
"de", "la", "que", "el", "en", "y", "a", "los", "del", "se", "las", "por",
|
||||
"un", "para", "con", "no", "una", "su", "al", "es", "lo", "como", "mas",
|
||||
"más", "pero", "sus", "le", "ya", "o", "este", "si", "sí", "porque",
|
||||
"esta", "entre", "cuando", "muy", "sin", "sobre", "tambien", "también",
|
||||
"me", "hasta", "hay", "donde", "quien", "desde", "todo", "nos", "durante",
|
||||
"todos", "uno", "les", "ni", "contra", "otros", "ese", "eso", "ante",
|
||||
"ellos", "e", "esto", "antes", "algunos", "que", "unos", "yo", "otro",
|
||||
"otras", "otra", "el", "tanto", "esa", "estos", "mucho", "nada", "muchos",
|
||||
# English
|
||||
"the", "of", "and", "to", "in", "is", "it", "for", "on", "with", "as",
|
||||
"was", "but", "are", "this", "that", "an", "be", "by", "or", "not", "at",
|
||||
"from", "my", "i", "you", "he", "she", "we", "they", "his", "her", "its",
|
||||
"our", "their", "what", "which", "who", "whom", "has", "have", "had", "do",
|
||||
"does", "did", "will", "would", "can", "could", "should", "may", "might",
|
||||
"must", "if", "then", "than", "so", "too", "very", "just", "also", "were",
|
||||
"been", "being", "there", "here", "all", "any", "some", "more", "most",
|
||||
"out", "up", "down", "into", "over", "such", "only", "own", "same",
|
||||
}
|
||||
|
||||
|
||||
def compute_vocabulary_stats(texts, top_k=20, remove_stopwords=True) -> dict:
|
||||
"""Profile the vocabulary of a corpus of documents.
|
||||
|
||||
Args:
|
||||
texts: List of strings (the corpus). Entries that are None or not a
|
||||
string are discarded silently.
|
||||
top_k: Maximum number of most-frequent terms to include in
|
||||
``top_terms``. Default 20. Does not affect the other measures.
|
||||
remove_stopwords: When True (default) common ES+EN stopwords are
|
||||
dropped from the token stream before any counting.
|
||||
|
||||
Returns:
|
||||
A dict with the exact keys ``n_tokens``, ``n_types``, ``ttr``,
|
||||
``n_hapax``, ``hapax_pct`` and ``top_terms``. For an empty corpus (no
|
||||
tokens after filtering): n_tokens=0, n_types=0, ttr=None, n_hapax=0,
|
||||
hapax_pct=None, top_terms=[]. Never raises — any exception degrades to
|
||||
the empty-corpus result.
|
||||
"""
|
||||
empty = {
|
||||
"n_tokens": 0,
|
||||
"n_types": 0,
|
||||
"ttr": None,
|
||||
"n_hapax": 0,
|
||||
"hapax_pct": None,
|
||||
"top_terms": [],
|
||||
}
|
||||
try:
|
||||
tokens = []
|
||||
for doc in texts or []:
|
||||
if not isinstance(doc, str):
|
||||
continue
|
||||
for tok in re.findall(r"\w+", doc.lower(), re.UNICODE):
|
||||
if tok.isdigit():
|
||||
continue
|
||||
if remove_stopwords and tok in _STOPWORDS:
|
||||
continue
|
||||
tokens.append(tok)
|
||||
|
||||
n_tokens = len(tokens)
|
||||
if n_tokens == 0:
|
||||
return dict(empty)
|
||||
|
||||
counts = Counter(tokens)
|
||||
n_types = len(counts)
|
||||
ttr = round(n_types / n_tokens, 4)
|
||||
|
||||
n_hapax = sum(1 for c in counts.values() if c == 1)
|
||||
hapax_pct = round(n_hapax / n_types * 100, 2)
|
||||
|
||||
top_terms = [
|
||||
{"term": term, "count": count, "pct": round(count / n_tokens * 100, 2)}
|
||||
for term, count in counts.most_common(top_k)
|
||||
]
|
||||
|
||||
return {
|
||||
"n_tokens": n_tokens,
|
||||
"n_types": n_types,
|
||||
"ttr": ttr,
|
||||
"n_hapax": n_hapax,
|
||||
"hapax_pct": hapax_pct,
|
||||
"top_terms": top_terms,
|
||||
}
|
||||
except Exception:
|
||||
return dict(empty)
|
||||
@@ -0,0 +1,74 @@
|
||||
"""Tests para compute_vocabulary_stats."""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
sys.path.insert(
|
||||
0, os.path.join(os.path.dirname(__file__), "..", "..", "functions")
|
||||
)
|
||||
|
||||
from datascience.compute_vocabulary_stats import compute_vocabulary_stats
|
||||
|
||||
|
||||
def test_basico():
|
||||
# Corpus con repeticiones y hapax. Stopwords desactivadas para controlar
|
||||
# exactamente que tokens entran.
|
||||
texts = ["gato gato perro", "perro perro raton", "elefante"]
|
||||
r = compute_vocabulary_stats(texts, top_k=10, remove_stopwords=False)
|
||||
|
||||
# n_types < n_tokens cuando hay repeticiones.
|
||||
assert r["n_types"] < r["n_tokens"]
|
||||
assert r["n_tokens"] == 7
|
||||
assert r["n_types"] == 4 # gato, perro, raton, elefante
|
||||
|
||||
# ttr en (0, 1].
|
||||
assert 0 < r["ttr"] <= 1
|
||||
assert r["ttr"] == round(4 / 7, 4)
|
||||
|
||||
# top_terms ordenado por count descendente.
|
||||
counts = [t["count"] for t in r["top_terms"]]
|
||||
assert counts == sorted(counts, reverse=True)
|
||||
assert r["top_terms"][0]["term"] == "perro"
|
||||
assert r["top_terms"][0]["count"] == 3
|
||||
|
||||
# hapax: raton y elefante aparecen exactamente una vez.
|
||||
assert r["n_hapax"] == 2
|
||||
assert r["hapax_pct"] == round(2 / 4 * 100, 2)
|
||||
|
||||
# pct coherente con count/n_tokens.
|
||||
assert r["top_terms"][0]["pct"] == round(3 / 7 * 100, 2)
|
||||
|
||||
|
||||
def test_vacio():
|
||||
# Sin documentos validos -> ceros / None / [].
|
||||
for arg in ([], None, [None, 123, ""], ["123 456"]):
|
||||
r = compute_vocabulary_stats(arg)
|
||||
assert r["n_tokens"] == 0
|
||||
assert r["n_types"] == 0
|
||||
assert r["ttr"] is None
|
||||
assert r["n_hapax"] == 0
|
||||
assert r["hapax_pct"] is None
|
||||
assert r["top_terms"] == []
|
||||
|
||||
|
||||
def test_stopwords_quitadas():
|
||||
texts = ["the gato the perro", "de la casa azul"]
|
||||
r = compute_vocabulary_stats(texts, remove_stopwords=True)
|
||||
terms = {t["term"] for t in r["top_terms"]}
|
||||
# Stopwords ES+EN no deben aparecer.
|
||||
assert "the" not in terms
|
||||
assert "de" not in terms
|
||||
assert "la" not in terms
|
||||
# Palabras de contenido si.
|
||||
assert "gato" in terms
|
||||
assert "casa" in terms
|
||||
|
||||
|
||||
def test_stopwords_conservadas():
|
||||
texts = ["the gato the perro", "de la casa azul"]
|
||||
r = compute_vocabulary_stats(texts, remove_stopwords=False)
|
||||
terms = {t["term"] for t in r["top_terms"]}
|
||||
# Con el filtro desactivado, las stopwords se conservan.
|
||||
assert "the" in terms
|
||||
assert "de" in terms
|
||||
assert "la" in terms
|
||||
@@ -0,0 +1,80 @@
|
||||
---
|
||||
name: detect_corpus_language
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def detect_corpus_language(texts, top_k=10, sample_max=1000) -> dict"
|
||||
description: "Estima la distribucion de idiomas de un corpus de textos con la libreria langdetect (import perezoso). Funcion pura y defensiva del grupo eda: filtra documentos None/no-str/vacios, muestrea hasta sample_max docs, clasifica cada uno con detect() ignorando los que langdetect no puede resolver (LangDetectException), y devuelve la distribucion top_k por frecuencia mas el idioma dominante. Si langdetect no esta instalada o algo falla, degrada a {available: False, ...} y NUNCA lanza (dict-no-throw). Seed fija (DetectorFactory.seed=0) para deteccion determinista."
|
||||
tags: [eda, datascience, text, nlp, language-detection, langdetect, pure, python]
|
||||
params:
|
||||
- name: texts
|
||||
desc: "Lista de strings (documentos). Los elementos None, no-str o vacios tras strip se descartan antes de clasificar."
|
||||
- name: top_k
|
||||
desc: "Numero maximo de idiomas a devolver en distribution, ordenados por count descendente (desempate por codigo ISO ascendente). Default 10."
|
||||
- name: sample_max
|
||||
desc: "Numero maximo de documentos a clasificar (se toman los primeros del corpus) para acotar el coste. Default 1000."
|
||||
output: >
|
||||
Dict con forma fija (dict-no-throw, nunca lanza):
|
||||
{"available": bool, "n_detected": int,
|
||||
"distribution": [{"lang": str, "count": int, "pct": float}, ...],
|
||||
"dominant": str|None}.
|
||||
available=True si langdetect es importable; lang son codigos ISO 639-1 ("es","en","fr",...);
|
||||
pct = count/n_detected*100 redondeado a 2 decimales; n_detected = docs clasificados con exito;
|
||||
dominant = idioma mas frecuente (None si no hubo detecciones). Corpus vacio con langdetect
|
||||
presente -> available True, n_detected 0, distribution [], dominant None. Sin langdetect (o
|
||||
fallo global) -> available False y el resto de campos a su valor vacio.
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: [langdetect]
|
||||
tested: true
|
||||
tests: ["test_mixto_es_en", "test_vacio", "test_degradacion"]
|
||||
test_file_path: "python/functions/datascience/detect_corpus_language_test.py"
|
||||
file_path: "python/functions/datascience/detect_corpus_language.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience.detect_corpus_language import detect_corpus_language
|
||||
|
||||
corpus = [
|
||||
"este es un texto bastante largo en español para detectar el idioma correctamente",
|
||||
"la inteligencia artificial transforma la manera en que trabajamos cada dia",
|
||||
"this is a fairly long english text to detect the language correctly without issues",
|
||||
]
|
||||
out = detect_corpus_language(corpus)
|
||||
# {"available": True, "n_detected": 3,
|
||||
# "distribution": [{"lang": "es", "count": 2, "pct": 66.67},
|
||||
# {"lang": "en", "count": 1, "pct": 33.33}],
|
||||
# "dominant": "es"}
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando perfiles una columna o corpus de texto en un EDA y necesites saber en
|
||||
que idioma(s) esta escrito antes de elegir tokenizadores, stopwords, modelos
|
||||
NLP o stemmers. Util tambien como check de calidad: detectar corpus mezclados
|
||||
o un idioma inesperado. Llamala con la lista de textos crudos; la funcion
|
||||
limpia, muestrea y resume sola.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- `langdetect` es **opcional**: si no esta instalada, la funcion no lanza —
|
||||
devuelve `{"available": False, "n_detected": 0, "distribution": [], "dominant": None}`.
|
||||
Comprueba `out["available"]` antes de usar la distribucion.
|
||||
- **Textos cortos** (pocas palabras o sin features lingüisticas) pueden no
|
||||
detectarse: langdetect lanza `LangDetectException`, que se ignora y el doc no
|
||||
cuenta en `n_detected`. Pasa frases razonablemente largas para resultados fiables.
|
||||
- **Determinismo**: se fija `DetectorFactory.seed = 0` en cada llamada para que la
|
||||
deteccion sea reproducible; sin esa semilla langdetect puede dar resultados
|
||||
ligeramente distintos entre ejecuciones.
|
||||
- `distribution` esta truncada a `top_k`; si el corpus tiene mas idiomas que
|
||||
`top_k`, la suma de los `count` mostrados puede ser menor que `n_detected`
|
||||
(pero `dominant` siempre refleja el idioma mas frecuente del corpus completo).
|
||||
@@ -0,0 +1,91 @@
|
||||
"""Detecta la distribucion de idiomas de un corpus de textos.
|
||||
|
||||
Funcion pura y defensiva: el computo es determinista y local (sin I/O de red).
|
||||
La libreria opcional `langdetect` se importa de forma perezosa dentro de la
|
||||
funcion; si no esta instalada (o cualquier paso falla), la funcion degrada
|
||||
limpiamente a `available=False` y NUNCA lanza excepciones.
|
||||
"""
|
||||
|
||||
|
||||
def detect_corpus_language(texts, top_k=10, sample_max=1000) -> dict:
|
||||
"""Estima la distribucion de idiomas de un corpus con `langdetect`.
|
||||
|
||||
Args:
|
||||
texts: lista de strings (documentos). Los elementos None, no-str o
|
||||
vacios tras strip se descartan.
|
||||
top_k: numero maximo de idiomas a devolver en `distribution`,
|
||||
ordenados por frecuencia descendente.
|
||||
sample_max: numero maximo de documentos a clasificar (se toman los
|
||||
primeros) para acotar el coste.
|
||||
|
||||
Returns:
|
||||
dict con la forma fija (dict-no-throw):
|
||||
{
|
||||
"available": bool, # True si langdetect es importable
|
||||
"n_detected": int, # documentos clasificados con exito
|
||||
"distribution": [{"lang": str, "count": int, "pct": float}, ...],
|
||||
"dominant": str | None,
|
||||
}
|
||||
"""
|
||||
degraded = {
|
||||
"available": False,
|
||||
"n_detected": 0,
|
||||
"distribution": [],
|
||||
"dominant": None,
|
||||
}
|
||||
try:
|
||||
# Import perezoso con degradacion: si langdetect no esta disponible,
|
||||
# devolvemos el dict degradado sin lanzar.
|
||||
try:
|
||||
from langdetect import detect, DetectorFactory
|
||||
|
||||
# Semilla fija -> deteccion determinista entre ejecuciones.
|
||||
DetectorFactory.seed = 0
|
||||
except Exception:
|
||||
return dict(degraded)
|
||||
|
||||
# Normaliza y filtra el corpus.
|
||||
docs = []
|
||||
if texts:
|
||||
for t in texts:
|
||||
if isinstance(t, str):
|
||||
s = t.strip()
|
||||
if s:
|
||||
docs.append(s)
|
||||
|
||||
# Muestreo de los primeros `sample_max` documentos.
|
||||
if sample_max is not None and sample_max >= 0:
|
||||
docs = docs[:sample_max]
|
||||
|
||||
# Conteo por idioma; langdetect lanza LangDetectException en textos
|
||||
# sin features detectables -> se ignora y se sigue.
|
||||
counts: dict = {}
|
||||
for doc in docs:
|
||||
try:
|
||||
lang = detect(doc)
|
||||
except Exception:
|
||||
continue
|
||||
counts[lang] = counts.get(lang, 0) + 1
|
||||
|
||||
n_detected = sum(counts.values())
|
||||
|
||||
# Orden estable: por count descendente, desempate por codigo de idioma.
|
||||
ordered = sorted(counts.items(), key=lambda kv: (-kv[1], kv[0]))
|
||||
|
||||
k = top_k if (top_k is not None and top_k >= 0) else len(ordered)
|
||||
distribution = []
|
||||
for lang, count in ordered[:k]:
|
||||
pct = round(count / n_detected * 100, 2) if n_detected else 0.0
|
||||
distribution.append({"lang": lang, "count": count, "pct": pct})
|
||||
|
||||
dominant = ordered[0][0] if ordered else None
|
||||
|
||||
return {
|
||||
"available": True,
|
||||
"n_detected": n_detected,
|
||||
"distribution": distribution,
|
||||
"dominant": dominant,
|
||||
}
|
||||
except Exception:
|
||||
# Cualquier fallo global degrada a available False sin lanzar.
|
||||
return dict(degraded)
|
||||
@@ -0,0 +1,58 @@
|
||||
"""Tests para detect_corpus_language."""
|
||||
|
||||
import builtins
|
||||
import os
|
||||
import sys
|
||||
|
||||
# Anade python/functions a sys.path para importar el paquete `datascience`.
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), ".."))
|
||||
|
||||
from datascience.detect_corpus_language import detect_corpus_language
|
||||
|
||||
_ES = [
|
||||
"este es un texto bastante largo en español para detectar el idioma correctamente sin problemas",
|
||||
"la inteligencia artificial transforma la manera en que trabajamos cada dia en muchos sectores",
|
||||
]
|
||||
_EN = [
|
||||
"this is a fairly long english text to detect the language correctly without any length issues",
|
||||
"machine learning models can classify documents into many different categories quite reliably",
|
||||
]
|
||||
|
||||
|
||||
def test_mixto_es_en():
|
||||
"""Golden: corpus mixto ES+EN claro -> available True, >=2 idiomas, counts coherentes."""
|
||||
out = detect_corpus_language(_ES + _EN)
|
||||
assert out["available"] is True
|
||||
assert out["dominant"] in {"es", "en"}
|
||||
assert len(out["distribution"]) >= 2
|
||||
total = sum(item["count"] for item in out["distribution"])
|
||||
assert total == out["n_detected"]
|
||||
assert out["n_detected"] == 4
|
||||
|
||||
|
||||
def test_vacio():
|
||||
"""Edge: lista vacia con langdetect presente -> available True, sin detecciones."""
|
||||
out = detect_corpus_language([])
|
||||
assert out["available"] is True
|
||||
assert out["n_detected"] == 0
|
||||
assert out["distribution"] == []
|
||||
assert out["dominant"] is None
|
||||
|
||||
|
||||
def test_degradacion(monkeypatch):
|
||||
"""Error path: si langdetect no es importable -> degrada a available False sin lanzar."""
|
||||
import datascience.detect_corpus_language as m
|
||||
|
||||
real_import = builtins.__import__
|
||||
|
||||
def fake_import(name, *a, **k):
|
||||
if name == "langdetect" or name.startswith("langdetect."):
|
||||
raise ImportError("simulado")
|
||||
return real_import(name, *a, **k)
|
||||
|
||||
monkeypatch.setattr(builtins, "__import__", fake_import)
|
||||
out = m.detect_corpus_language(["hola mundo", "hello world"])
|
||||
assert out["available"] is False
|
||||
assert out["n_detected"] == 0
|
||||
assert out["distribution"] == []
|
||||
assert out["dominant"] is None
|
||||
@@ -0,0 +1,97 @@
|
||||
---
|
||||
name: extract_null_mask
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def extract_null_mask(query_fn, table: str, columns: list, max_rows: int = 5000) -> dict"
|
||||
description: "Extrae la mascara de nulos (1=falta / 0=presente) de una muestra de filas de una tabla, una lista 0/1 por columna alineada por fila, para alimentar el capitulo de calidad / patron de nulos de AutomaticEDA sin que el capitulo toque la base de datos. Recibe un lector read-only inyectado `query_fn(sql) -> dict` (mismo contrato que duckdb_query_readonly / pg_query / el `_q` de profile_table) y NO abre ninguna conexion por su cuenta. Construye UNA sola query que proyecta por cada columna `CASE WHEN \"col\" IS NULL THEN 1 ELSE 0 END` con identificadores escapados y LIMIT. Devuelve dict dict-no-throw: columns (efectivamente leidas, en orden), mask (lista int 0/1 por columna, misma longitud todas) y n. Una celda None se cuenta defensivamente como 1 (falta)."
|
||||
tags: [eda, nulls, missing, datascience, automatic-eda, extraction, read-only, duckdb, postgres, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: []
|
||||
params:
|
||||
- name: query_fn
|
||||
desc: "callable lector read-only del backend activo. Recibe un string SQL y devuelve un dict {'status':'ok','rows':[{col:val,...},...]} (mismo contrato que duckdb_query_readonly o el `_q` de profile_table). NO se abre ninguna conexion dentro de la funcion: toda la lectura pasa por query_fn. Si es None -> error."
|
||||
- name: table
|
||||
desc: "nombre de la tabla de la que muestrear la mascara de nulos. Se escapa con comillas dobles en la query. Vacio o None -> status error."
|
||||
- name: columns
|
||||
desc: "lista de nombres de columna a evaluar. Cada una produce una entrada en `mask` con una lista 0/1 paralela por fila (1=IS NULL, 0=presente). Cada nombre se escapa con comillas dobles. Vacia o None -> status error."
|
||||
- name: max_rows
|
||||
desc: "limite de filas a muestrear (clausula LIMIT). Default 5000. Protege frente a tablas enormes; con LIMIT obtienes el primer tramo, no un muestreo uniforme."
|
||||
output: "dict (nunca lanza). En exito: {'status':'ok','table':str,'columns':[str,...] (en orden),'mask':{col:[int 0/1,...],...} (1=falta/IS NULL, 0=presente; todas las listas con misma longitud = n),'n':int}. En error (sin lanzar): {'status':'error','error':str,'table':str,'columns':[],'mask':{},'n':0}. Errores: query_fn None, table vacia, columns vacia, o query_fn devuelve status!='ok' (se propaga su error)."
|
||||
tested: true
|
||||
tests: ["test_golden_mask_alineada", "test_celda_none_cuenta_como_falta", "test_columns_vacia_status_error", "test_query_fn_status_error_propaga", "test_query_fn_none_da_error_sin_reventar", "test_sql_contiene_case_y_limit"]
|
||||
test_file_path: "python/functions/datascience/extract_null_mask_test.py"
|
||||
file_path: "python/functions/datascience/extract_null_mask.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience.extract_null_mask import extract_null_mask
|
||||
from infra import duckdb_query_readonly
|
||||
|
||||
# El lector read-only se inyecta como closure (igual que el `_q` de profile_table).
|
||||
db = "data/clientes.duckdb"
|
||||
def _q(sql):
|
||||
return duckdb_query_readonly(db, sql)
|
||||
|
||||
res = extract_null_mask(_q, "clientes", ["email", "telefono", "edad"])
|
||||
# res == {
|
||||
# "status": "ok",
|
||||
# "table": "clientes",
|
||||
# "columns": ["email", "telefono", "edad"],
|
||||
# "mask": {
|
||||
# "email": [0, 0, 1, 0, ...], # fila 2 sin email
|
||||
# "telefono": [1, 0, 1, 0, ...],
|
||||
# "edad": [0, 0, 0, 1, ...],
|
||||
# },
|
||||
# "n": 5000,
|
||||
# }
|
||||
|
||||
# % de nulos por columna a partir de la muestra:
|
||||
pct = {c: 100 * sum(bits) / max(res["n"], 1) for c, bits in res["mask"].items()}
|
||||
|
||||
# Se entrega al capitulo de calidad sin que este toque la BD:
|
||||
ctx = {"null_mask": res}
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando el capitulo de calidad / patron de nulos de AutomaticEDA necesita saber
|
||||
DONDE faltan los valores (no solo cuantos) y NO debe abrir la base de datos por
|
||||
su cuenta: extraes aqui la mascara 0/1 por columna alineada por fila y se la pasas
|
||||
en `ctx['null_mask']`. Usala siempre que quieras detectar co-ocurrencia de nulos
|
||||
(filas que fallan en varias columnas a la vez), calcular el % de nulos sobre una
|
||||
muestra, o pintar un heatmap de missingness reutilizando un unico lector read-only
|
||||
inyectado, en vez de hacer N `COUNT(*) WHERE col IS NULL` por separado.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura**: lee de la base de datos a traves de `query_fn`. No abre conexiones
|
||||
por su cuenta — depende por completo del lector inyectado. Sigue el estilo
|
||||
dict-no-throw del grupo `eda`: nunca lanza; ante cualquier fallo devuelve
|
||||
`{"status":"error","error":...}` con `columns=[]`, `mask={}`, `n=0`.
|
||||
- **`error_type` en el frontmatter es `error_go_core` por convencion del registry**
|
||||
(toda funcion impura debe declararlo y el indexer lo exige), pero el codigo
|
||||
NO lanza esa excepcion: degrada al dict de error. Es metadata, no comportamiento.
|
||||
- **Muestra, no censo**: con `LIMIT max_rows` obtienes el primer tramo de filas que
|
||||
devuelva el backend, no un muestreo uniforme ni la tabla entera. El % de nulos
|
||||
derivado es una estimacion sobre esa muestra; para el conteo exacto usa un
|
||||
agregado `COUNT(*)`/`COUNT(col)` aparte.
|
||||
- **Alineacion por fila**: `mask[col][i]` corresponde a la misma fila `i` que
|
||||
`mask[otra_col][i]`. Todas las listas tienen longitud `n`, asi que puedes cruzar
|
||||
columnas por indice (co-ocurrencia de nulos) sin re-alinear.
|
||||
- **Defensa None -> 1**: el SQL ya devuelve 0/1, pero si una celda llega como `None`
|
||||
(CASE no aplicado, columna ausente en la fila, backend que nulifica) se cuenta
|
||||
como 1 (falta). Un valor inesperado no convertible a int se trata como presente (0).
|
||||
- **No loguear los datos crudos**: aunque `mask` es solo 0/1, los nombres de columna
|
||||
pueden revelar el esquema. En trazas usa `n` y el numero de columnas, no el dict
|
||||
completo.
|
||||
@@ -0,0 +1,101 @@
|
||||
"""extract_null_mask — extrae la mascara de nulos (1=falta / 0=presente) de una tabla.
|
||||
|
||||
Lector read-only inyectado: recibe `query_fn(sql) -> dict` con el mismo contrato
|
||||
que duckdb_query_readonly / pg_query (y que el `_q` de profile_table):
|
||||
`{"status": "ok", "rows": [{col: val, ...}, ...]}`. Esta funcion NO abre ninguna
|
||||
conexion por su cuenta — solo usa `query_fn`. Construye UNA sola query que, por
|
||||
cada columna pedida, evalua `CASE WHEN "col" IS NULL THEN 1 ELSE 0 END` y devuelve
|
||||
una muestra de filas con esos bits. El resultado es un dict `mask` con una lista
|
||||
0/1 por columna, alineada por fila (1 = el valor falta / IS NULL, 0 = presente),
|
||||
listo para alimentar el capitulo de calidad / patron de nulos de AutomaticEDA sin
|
||||
que el capitulo toque la base de datos.
|
||||
|
||||
Estilo dict-no-throw del grupo `eda`: nunca lanza; captura cualquier excepcion y
|
||||
degrada a `{"status": "error", "error": str, ...}`.
|
||||
"""
|
||||
|
||||
|
||||
def _to_bit(value):
|
||||
"""Coacciona el valor 0/1 del CASE a int de forma defensiva.
|
||||
|
||||
El SQL ya devuelve 0 (presente) o 1 (falta). Por si una celda llega como None
|
||||
(el CASE no se aplico o el backend la nulifico), se cuenta como 1 (falta). El
|
||||
resto se reduce a int: un entero distinto de 0 cuenta como 1 (falta), 0 como
|
||||
presente. Un valor no convertible se trata como presente (0) — nunca lanza.
|
||||
"""
|
||||
if value is None:
|
||||
return 1
|
||||
try:
|
||||
return 1 if int(value) != 0 else 0
|
||||
except (TypeError, ValueError):
|
||||
return 0
|
||||
|
||||
|
||||
def extract_null_mask(query_fn, table, columns, max_rows=5000):
|
||||
"""Extrae la mascara de nulos (1=falta / 0=presente) de una muestra de la tabla.
|
||||
|
||||
Args:
|
||||
query_fn: callable lector read-only del backend activo. Recibe un string
|
||||
SQL y devuelve un dict {"status": "ok", "rows": [{col: val, ...}]}
|
||||
(mismo contrato que duckdb_query_readonly / el `_q` de profile_table).
|
||||
No se abre ninguna conexion aqui: toda la lectura pasa por query_fn.
|
||||
table: nombre de la tabla. Se escapa con comillas dobles en la query.
|
||||
columns: lista de nombres de columna a evaluar. Cada una produce una
|
||||
entrada en `mask` con una lista 0/1 paralela por fila. Vacia o None ->
|
||||
status error.
|
||||
max_rows: limite de filas a muestrear (clausula LIMIT). Default 5000.
|
||||
|
||||
Returns:
|
||||
dict (nunca lanza):
|
||||
{
|
||||
"status": "ok" | "error",
|
||||
"error": str, # solo si status == "error"
|
||||
"table": str,
|
||||
"columns": [str, ...], # columnas efectivamente leidas, en orden
|
||||
"mask": {col: [int 0/1, ...], ...}, # alineada por fila, 1=falta, 0=presente
|
||||
"n": int # nº de filas muestreadas
|
||||
}
|
||||
Todas las listas de `mask` tienen la misma longitud (= n).
|
||||
"""
|
||||
base = {"status": "ok", "table": table, "columns": [], "mask": {}, "n": 0}
|
||||
try:
|
||||
if query_fn is None:
|
||||
return {**base, "status": "error", "error": "query_fn es None"}
|
||||
if not table:
|
||||
return {**base, "status": "error", "error": "table es obligatorio"}
|
||||
if not columns:
|
||||
return {**base, "status": "error", "error": "columns vacío"}
|
||||
|
||||
# Identificadores escapados con comillas dobles (como hace profile_table)
|
||||
# para tolerar nombres con mayusculas/espacios/palabras reservadas. Cada
|
||||
# columna se proyecta como su propio bit IS NULL conservando el alias.
|
||||
select_sql = ", ".join(
|
||||
f'(CASE WHEN "{c}" IS NULL THEN 1 ELSE 0 END) AS "{c}"' for c in columns
|
||||
)
|
||||
sql = f'SELECT {select_sql} FROM "{table}" LIMIT {int(max_rows)}'
|
||||
|
||||
q = query_fn(sql)
|
||||
if not isinstance(q, dict) or q.get("status") != "ok":
|
||||
err = (
|
||||
q.get("error", "query_fn fallo")
|
||||
if isinstance(q, dict)
|
||||
else "query_fn no devolvio un dict"
|
||||
)
|
||||
return {**base, "status": "error", "error": err}
|
||||
|
||||
rows = q.get("rows", []) or []
|
||||
mask = {c: [] for c in columns}
|
||||
for row in rows:
|
||||
for c in columns:
|
||||
# row.get tolera filas que no traigan la columna (None -> falta).
|
||||
mask[c].append(_to_bit(row.get(c) if isinstance(row, dict) else None))
|
||||
|
||||
return {
|
||||
"status": "ok",
|
||||
"table": table,
|
||||
"columns": list(columns),
|
||||
"mask": mask,
|
||||
"n": len(rows),
|
||||
}
|
||||
except Exception as e: # noqa: BLE001 - dict-no-throw: degradar, nunca lanzar
|
||||
return {**base, "status": "error", "error": str(e)}
|
||||
@@ -0,0 +1,116 @@
|
||||
"""Tests para extract_null_mask.
|
||||
|
||||
No usa DuckDB real: inyecta un query_fn FAKE (closure) que devuelve filas
|
||||
predefinidas (simulando el SELECT de bits 0/1) y, opcionalmente, captura el SQL
|
||||
recibido para verificar la query generada (CASE WHEN ... IS NULL + LIMIT). Asi el
|
||||
test es autocontenido y no depende de ningun backend.
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
sys.path.insert(0, os.path.dirname(__file__))
|
||||
|
||||
from extract_null_mask import extract_null_mask
|
||||
|
||||
|
||||
def _fake_query(rows, captured=None, status="ok", error=None):
|
||||
"""Crea un query_fn FAKE.
|
||||
|
||||
`captured` (lista opcional) recibe el SQL ejecutado para poder inspeccionarlo.
|
||||
`status`/`error` permiten simular un fallo del backend.
|
||||
"""
|
||||
|
||||
def _q(sql):
|
||||
if captured is not None:
|
||||
captured.append(sql)
|
||||
if status != "ok":
|
||||
return {"status": "error", "error": error or "boom"}
|
||||
return {"status": "ok", "rows": rows}
|
||||
|
||||
return _q
|
||||
|
||||
|
||||
def test_golden_mask_alineada():
|
||||
"""Golden: mask 0/1 por columna alineada por fila, n correcto, status ok."""
|
||||
# Cada fila simula el SELECT (CASE WHEN col IS NULL THEN 1 ELSE 0 END) AS col.
|
||||
rows = [
|
||||
{"email": 0, "telefono": 1, "edad": 0},
|
||||
{"email": 0, "telefono": 0, "edad": 1},
|
||||
{"email": 1, "telefono": 1, "edad": 0},
|
||||
]
|
||||
res = extract_null_mask(_fake_query(rows), "clientes", ["email", "telefono", "edad"])
|
||||
assert res["status"] == "ok"
|
||||
assert res["table"] == "clientes"
|
||||
assert res["columns"] == ["email", "telefono", "edad"]
|
||||
assert res["n"] == 3
|
||||
assert res["mask"]["email"] == [0, 0, 1]
|
||||
assert res["mask"]["telefono"] == [1, 0, 1]
|
||||
assert res["mask"]["edad"] == [0, 1, 0]
|
||||
# Todas las listas con la misma longitud.
|
||||
assert all(len(v) == res["n"] for v in res["mask"].values())
|
||||
|
||||
|
||||
def test_celda_none_cuenta_como_falta():
|
||||
"""Una celda None se cuenta defensivamente como 1 (falta)."""
|
||||
rows = [
|
||||
{"email": 0, "telefono": None},
|
||||
{"email": None, "telefono": 1},
|
||||
{"email": 1, "telefono": 0},
|
||||
]
|
||||
res = extract_null_mask(_fake_query(rows), "clientes", ["email", "telefono"])
|
||||
assert res["status"] == "ok"
|
||||
assert res["mask"]["email"] == [0, 1, 1]
|
||||
assert res["mask"]["telefono"] == [1, 1, 0]
|
||||
assert res["n"] == 3
|
||||
|
||||
|
||||
def test_columns_vacia_status_error():
|
||||
"""columns vacia -> status error con columns/mask/n vacios."""
|
||||
res = extract_null_mask(_fake_query([]), "clientes", [])
|
||||
assert res["status"] == "error"
|
||||
assert "columns" in res["error"]
|
||||
assert res["table"] == "clientes"
|
||||
assert res["columns"] == []
|
||||
assert res["mask"] == {}
|
||||
assert res["n"] == 0
|
||||
|
||||
|
||||
def test_query_fn_status_error_propaga():
|
||||
"""query_fn que devuelve status != ok -> se propaga como error, mask {}."""
|
||||
res = extract_null_mask(
|
||||
_fake_query([], status="error", error="db locked"),
|
||||
"clientes",
|
||||
["email"],
|
||||
)
|
||||
assert res["status"] == "error"
|
||||
assert "db locked" in res["error"]
|
||||
assert res["mask"] == {}
|
||||
assert res["n"] == 0
|
||||
|
||||
|
||||
def test_query_fn_none_da_error_sin_reventar():
|
||||
"""query_fn None -> error degradado, sin excepcion."""
|
||||
res = extract_null_mask(None, "clientes", ["email"])
|
||||
assert res["status"] == "error"
|
||||
assert res["columns"] == []
|
||||
assert res["mask"] == {}
|
||||
assert res["n"] == 0
|
||||
|
||||
|
||||
def test_sql_contiene_case_y_limit():
|
||||
"""La query genera un CASE WHEN IS NULL por columna escapada + LIMIT sobre la tabla."""
|
||||
captured = []
|
||||
rows = [{"email": 0}]
|
||||
extract_null_mask(
|
||||
_fake_query(rows, captured),
|
||||
"clientes_tbl",
|
||||
["email"],
|
||||
max_rows=123,
|
||||
)
|
||||
assert len(captured) == 1
|
||||
sql = captured[0]
|
||||
assert 'CASE WHEN "email" IS NULL THEN 1 ELSE 0 END' in sql
|
||||
assert 'AS "email"' in sql
|
||||
assert 'FROM "clientes_tbl"' in sql
|
||||
assert "LIMIT 123" in sql
|
||||
@@ -0,0 +1,102 @@
|
||||
---
|
||||
name: extract_text_sample
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def extract_text_sample(db_path: str, table: str, columns: list, backend: str = 'duckdb', sample: int = 2000) -> dict"
|
||||
description: "Muestrea columnas de texto de una tabla DuckDB/Postgres con push-down SQL (LIMIT sample), SIN traer la tabla entera a RAM. Funcion impura del grupo de capacidad `eda`: la usan los capitulos de texto/NLP del AutomaticEDA que necesitan valores crudos de texto (longitudes, tokens, ejemplos) sobre una muestra acotada. Construye el lector read-only query_fn(sql)->dict igual que build_eda_render_ctx (closure sobre duckdb_query_readonly / pg_query importados perezosamente desde infra). Escapa los identificadores con comillas dobles y lanza una sola query SELECT \"c1\", \"c2\" FROM \"table\" LIMIT n. Por columna, la lista de strings solo contiene valores NO None y NO vacios: cada celda no nula se convierte con str(...) y se descarta si queda cadena vacia. Estilo dict-no-throw del grupo eda: NUNCA lanza; ante cualquier fallo (query, conversion, backend desconocido) devuelve {status:'error', error:str, columns:{}, n:0}. La clave n reporta el numero de FILAS leidas por la query (antes de filtrar None/vacios)."
|
||||
tags: [eda, datascience, text, nlp, extraction, read-only, duckdb, postgres, python]
|
||||
uses_functions: [duckdb_query_readonly_py_infra, pg_query_py_infra]
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: []
|
||||
params:
|
||||
- name: db_path
|
||||
desc: "ruta al archivo DuckDB, o DSN PostgreSQL si backend='postgres'. Se inyecta en el closure query_fn. No se valida aqui: si la base no existe o el DSN es invalido, la query devuelve status error y el resultado es {status:'error', ...} (no lanza)."
|
||||
- name: table
|
||||
desc: "nombre de la tabla. Se escapa con comillas dobles en la query (SELECT ... FROM \"table\")."
|
||||
- name: columns
|
||||
desc: "lista de nombres de columna de texto a muestrear. Se filtra a las entradas que sean str no vacio; cada nombre se escapa con comillas dobles. Si tras filtrar queda vacia -> {status:'ok', columns:{}, n:0} sin tocar la base."
|
||||
- name: backend
|
||||
desc: "'duckdb' (default) o 'postgres'. Selecciona el lector read-only del registry (duckdb_query_readonly / pg_query). Cualquier otro valor -> {status:'error', error:'backend desconocido: <valor>', columns:{}, n:0}."
|
||||
- name: sample
|
||||
desc: "maximo de filas a muestrear (clausula LIMIT). Default 2000. Acota memoria y tiempo: con tablas grandes obtienes el primer tramo por orden fisico (sin ORDER BY), no un muestreo uniforme."
|
||||
output: "dict dict-no-throw (NUNCA lanza): {status:'ok'|'error', columns:{col_name:[str,...]}, n:int, error:str}. En exito (status='ok') columns mapea cada columna pedida a la lista de sus valores de texto NO None y NO vacios (cada celda convertida con str(...)); n es el numero de FILAS leidas por la query (antes de filtrar None/vacios). columns vacio -> {status:'ok', columns:{}, n:0}. En error (backend desconocido, query con status!='ok', o cualquier excepcion) -> {status:'error', error:str, columns:{}, n:0}; la clave error solo aparece en este caso."
|
||||
tested: true
|
||||
tests: ["test_extract_basic", "test_backend_desconocido", "test_columns_vacio", "test_sample_limit"]
|
||||
test_file_path: "python/functions/datascience/extract_text_sample_test.py"
|
||||
file_path: "python/functions/datascience/extract_text_sample.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
# Import directo del submodulo (no requiere export en datascience/__init__.py).
|
||||
from datascience.extract_text_sample import extract_text_sample
|
||||
|
||||
# Muestrea hasta 2000 filas de dos columnas de texto de una tabla DuckDB.
|
||||
res = extract_text_sample(
|
||||
"data/reviews.duckdb", "reviews", ["title", "body"],
|
||||
backend="duckdb", sample=2000,
|
||||
)
|
||||
# res == {
|
||||
# "status": "ok",
|
||||
# "columns": {
|
||||
# "title": ["Gran producto", "No funciona", ...], # solo no-None, no-""
|
||||
# "body": ["Lo uso a diario...", ...],
|
||||
# },
|
||||
# "n": 2000, # filas leidas por la query (antes de filtrar None/vacios)
|
||||
# }
|
||||
|
||||
# Postgres: db_path es el DSN.
|
||||
res_pg = extract_text_sample(
|
||||
"postgresql://user:pass@localhost:5433/trends", "comentarios", ["texto"],
|
||||
backend="postgres", sample=500,
|
||||
)
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando necesites valores CRUDOS de texto de una o varias columnas para analisis
|
||||
NLP/texto (distribucion de longitudes, conteo de tokens, ejemplos representativos,
|
||||
deteccion de idioma) pero NO quieras cargar la tabla entera en memoria. Es el
|
||||
muestreador de texto del grupo `eda`: una sola llamada con push-down `LIMIT`
|
||||
devuelve listas de strings por columna, limpias de None y vacios, listas para
|
||||
alimentar un capitulo de texto del AutomaticEDA o cualquier rutina de tokenizado.
|
||||
Usala junto a `profile_table` / `build_eda_render_ctx` cuando el perfil agregado
|
||||
no basta y hace falta el texto real.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura**: lee de la base de datos a traves de `query_fn` (closure sobre
|
||||
`duckdb_query_readonly` / `pg_query`). No abre conexiones fuera de esos wrappers
|
||||
del registry. Estilo dict-no-throw del grupo `eda`: NUNCA lanza; ante cualquier
|
||||
fallo devuelve `{status:'error', error:str, columns:{}, n:0}`.
|
||||
- **`error_type` en el frontmatter es `error_go_core` por convencion del registry**
|
||||
(toda funcion impura debe declararlo y el indexer lo exige), pero el codigo NO
|
||||
lanza esa excepcion: degrada al dict de error. Es metadata, no comportamiento.
|
||||
- **Backend desconocido**: con un `backend` que no sea `duckdb` ni `postgres`
|
||||
devuelve `{status:'error', error:'backend desconocido: <valor>', columns:{},
|
||||
n:0}` sin tocar la base.
|
||||
- **Las listas NO incluyen None ni cadenas vacias**: cada celda no nula se pasa
|
||||
por `str(...)` y se descarta si queda `""`. Por eso `len(columns[col])` puede ser
|
||||
menor que `n` (que cuenta las filas leidas). Si necesitas alineacion por fila
|
||||
(una entrada por fila aunque sea None), usa `build_eda_render_ctx` (raw_numeric),
|
||||
no esta funcion.
|
||||
- **`LIMIT sample` sin `ORDER BY`**: con tablas grandes obtienes el primer tramo
|
||||
por orden fisico del backend, no un muestreo uniforme ni reproducible. Sube
|
||||
`sample` para mas cobertura, o pre-ordena/aleatoriza la tabla si necesitas
|
||||
representatividad.
|
||||
- **DuckDB en sandbox por defecto**: `duckdb_query_readonly` abre la conexion con
|
||||
`enable_external_access=False`, asi que la query solo puede leer la propia base
|
||||
(no `read_csv`/`httpfs`/`ATTACH` a paths externos). Lee tablas ya existentes en
|
||||
el archivo DuckDB sin problema.
|
||||
- **No loguear los datos crudos**: las listas de `columns` pueden contener texto
|
||||
sensible (reviews, comentarios, PII). En trazas usa solo conteos (`n`,
|
||||
`len(columns[col])`) y nombres de columna, no el dict completo.
|
||||
@@ -0,0 +1,112 @@
|
||||
"""extract_text_sample — muestrea columnas de texto de una tabla sin cargarla en RAM.
|
||||
|
||||
Funcion impura (lee de la base de datos) del grupo de capacidad `eda`. Dado un
|
||||
``db_path`` + ``table`` (DuckDB o PostgreSQL) y una lista de ``columns`` de texto,
|
||||
trae una MUESTRA de esas columnas con push-down SQL (``LIMIT sample``), nunca la
|
||||
tabla entera. La usan los capitulos de texto/NLP del AutomaticEDA que necesitan
|
||||
valores crudos de texto (longitudes, tokens, ejemplos) sin materializar millones
|
||||
de filas en memoria.
|
||||
|
||||
El lector read-only ``query_fn(sql) -> dict`` se construye igual que en
|
||||
``build_eda_render_ctx`` / ``profile_table``: un closure sobre el wrapper del
|
||||
registry (``duckdb_query_readonly`` / ``pg_query``), importado perezosamente
|
||||
dentro de la funcion para no crear ciclos al cargar el ``__init__`` del paquete
|
||||
``datascience``. Nunca abre conexiones fuera de esos wrappers.
|
||||
|
||||
Estilo dict-no-throw del grupo `eda`: la funcion NUNCA lanza. Captura cualquier
|
||||
excepcion (query, conversion) y devuelve ``{"status":"error", "error":str(e),
|
||||
"columns":{}, "n":0}``. Si la query subyacente devuelve ``status != "ok"``, se
|
||||
propaga como error con el mensaje del wrapper.
|
||||
|
||||
Por columna, la lista de strings solo contiene valores NO nulos y NO vacios:
|
||||
cada celda no-None se convierte con ``str(...)`` y se descarta si queda ``""``.
|
||||
La clave ``n`` reporta el numero de FILAS leidas por la query (antes de filtrar
|
||||
los None/vacios), util para saber cuanto se muestreo realmente.
|
||||
"""
|
||||
|
||||
|
||||
def extract_text_sample(db_path, table, columns, backend="duckdb", sample=2000):
|
||||
"""Muestrea columnas de texto de una tabla DuckDB/Postgres con push-down SQL.
|
||||
|
||||
Args:
|
||||
db_path: ruta al archivo DuckDB, o DSN PostgreSQL si backend="postgres".
|
||||
Se inyecta en el closure query_fn. No se valida aqui: si la base no
|
||||
existe o el DSN es invalido, la query devuelve status error y el
|
||||
resultado es {status:'error', ...} (no lanza).
|
||||
table: nombre de la tabla. Se escapa con comillas dobles en la query.
|
||||
columns: lista de nombres de columna de texto a muestrear. Se filtra a las
|
||||
entradas que sean str no vacio; cada nombre se escapa con comillas
|
||||
dobles. Si tras filtrar queda vacia -> {status:'ok', columns:{}, n:0}.
|
||||
backend: "duckdb" (default) o "postgres". Selecciona el lector read-only
|
||||
del registry (duckdb_query_readonly / pg_query). Cualquier otro valor
|
||||
-> {status:'error', error:'backend desconocido: ...', columns:{}, n:0}.
|
||||
sample: maximo de filas a muestrear (clausula LIMIT). Default 2000. Acota
|
||||
memoria y tiempo: con tablas grandes obtienes el primer tramo por
|
||||
orden fisico, no un muestreo uniforme.
|
||||
|
||||
Returns:
|
||||
dict (dict-no-throw, NUNCA lanza):
|
||||
{"status": "ok"|"error",
|
||||
"columns": {col_name: [str, str, ...], ...}, # solo no-None, no-""
|
||||
"n": int, # nº de filas leidas por la query (antes de filtrar)
|
||||
"error": str} # solo presente si status == "error"
|
||||
"""
|
||||
try:
|
||||
# 1) Lector read-only del backend activo, construido como en
|
||||
# build_eda_render_ctx (closure sobre el wrapper del registry). Imports
|
||||
# perezosos: este modulo vive en el paquete `datascience`, importar a
|
||||
# `infra` a nivel de modulo crearia un ciclo al cargar el __init__.
|
||||
if backend == "duckdb":
|
||||
from infra import duckdb_query_readonly
|
||||
|
||||
def query_fn(sql):
|
||||
return duckdb_query_readonly(db_path, sql)
|
||||
|
||||
elif backend == "postgres":
|
||||
from infra import pg_query
|
||||
|
||||
def query_fn(sql):
|
||||
return pg_query(db_path, sql)
|
||||
|
||||
else:
|
||||
return {
|
||||
"status": "error",
|
||||
"error": f"backend desconocido: {backend}",
|
||||
"columns": {},
|
||||
"n": 0,
|
||||
}
|
||||
|
||||
# 2) Columnas validas (str no vacio). Si no queda ninguna, nada que
|
||||
# muestrear: ok con columns vacio.
|
||||
cols = []
|
||||
if isinstance(columns, (list, tuple)):
|
||||
cols = [c for c in columns if isinstance(c, str) and c != ""]
|
||||
if not cols:
|
||||
return {"status": "ok", "columns": {}, "n": 0}
|
||||
|
||||
# 3) Push-down: una sola query con LIMIT. Identificadores escapados con
|
||||
# comillas dobles, igual que build_eda_render_ctx.
|
||||
cols_sql = ", ".join(f'"{c}"' for c in cols)
|
||||
sql = f'SELECT {cols_sql} FROM "{table}" LIMIT {int(sample)}'
|
||||
q = query_fn(sql)
|
||||
if not isinstance(q, dict) or q.get("status") != "ok":
|
||||
err = q.get("error") if isinstance(q, dict) else "query sin resultado"
|
||||
return {"status": "error", "error": str(err), "columns": {}, "n": 0}
|
||||
|
||||
rows = q.get("rows") or []
|
||||
out = {c: [] for c in cols}
|
||||
for row in rows:
|
||||
if not isinstance(row, dict):
|
||||
continue
|
||||
for c in cols:
|
||||
value = row.get(c)
|
||||
if value is None:
|
||||
continue
|
||||
s = str(value)
|
||||
if s == "":
|
||||
continue
|
||||
out[c].append(s)
|
||||
|
||||
return {"status": "ok", "columns": out, "n": len(rows)}
|
||||
except Exception as exc: # noqa: BLE001 - dict-no-throw del grupo eda
|
||||
return {"status": "error", "error": str(exc), "columns": {}, "n": 0}
|
||||
@@ -0,0 +1,83 @@
|
||||
"""Tests para extract_text_sample.
|
||||
|
||||
Self-contained: crea un DuckDB temporal pequeño con una columna de texto (algunas
|
||||
filas con NULL) y una numerica, y verifica que la muestra de texto trae solo los
|
||||
valores no nulos, que el backend desconocido y la lista de columnas vacia se
|
||||
manejan dict-no-throw, y que sample acota el numero de filas leidas.
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
_HERE = os.path.dirname(os.path.abspath(__file__))
|
||||
_FUNCTIONS = os.path.abspath(os.path.join(_HERE, "..")) # python/functions
|
||||
if _FUNCTIONS not in sys.path:
|
||||
sys.path.insert(0, _FUNCTIONS)
|
||||
|
||||
import duckdb # noqa: E402
|
||||
|
||||
from datascience.extract_text_sample import extract_text_sample # noqa: E402
|
||||
|
||||
_TABLE = "t"
|
||||
# 6 filas: txt VARCHAR con dos NULL, other INT siempre presente.
|
||||
_ROWS = [
|
||||
("alpha", 1),
|
||||
("beta", 2),
|
||||
(None, 3),
|
||||
("gamma", 4),
|
||||
(None, 5),
|
||||
("delta", 6),
|
||||
]
|
||||
_TXT_NON_NULL = {"alpha", "beta", "gamma", "delta"}
|
||||
|
||||
|
||||
def _make_db(tmp_path):
|
||||
"""Crea un DuckDB temporal con la tabla de prueba y devuelve su ruta."""
|
||||
db_path = os.path.join(str(tmp_path), "text_sample.duckdb")
|
||||
con = duckdb.connect(db_path)
|
||||
try:
|
||||
con.execute(f'CREATE TABLE "{_TABLE}" (txt VARCHAR, other INTEGER)')
|
||||
con.executemany(f'INSERT INTO "{_TABLE}" VALUES (?, ?)', _ROWS)
|
||||
finally:
|
||||
con.close()
|
||||
return db_path
|
||||
|
||||
|
||||
def test_extract_basic(tmp_path):
|
||||
db_path = _make_db(tmp_path)
|
||||
res = extract_text_sample(db_path, _TABLE, ["txt"])
|
||||
assert res["status"] == "ok"
|
||||
# n = filas leidas por la query (6), antes de filtrar None.
|
||||
assert res["n"] == len(_ROWS)
|
||||
# columns["txt"] trae solo los strings no nulos (los dos NULL fuera).
|
||||
assert "txt" in res["columns"]
|
||||
assert set(res["columns"]["txt"]) == _TXT_NON_NULL
|
||||
assert len(res["columns"]["txt"]) == len(_TXT_NON_NULL)
|
||||
# No se pidio "other", no debe aparecer.
|
||||
assert "other" not in res["columns"]
|
||||
|
||||
|
||||
def test_backend_desconocido(tmp_path):
|
||||
db_path = _make_db(tmp_path)
|
||||
res = extract_text_sample(db_path, _TABLE, ["txt"], backend="mysql")
|
||||
assert res["status"] == "error"
|
||||
assert "backend desconocido" in res["error"]
|
||||
assert res["columns"] == {}
|
||||
assert res["n"] == 0
|
||||
|
||||
|
||||
def test_columns_vacio(tmp_path):
|
||||
db_path = _make_db(tmp_path)
|
||||
res = extract_text_sample(db_path, _TABLE, [])
|
||||
assert res["status"] == "ok"
|
||||
assert res["columns"] == {}
|
||||
assert res["n"] == 0
|
||||
|
||||
|
||||
def test_sample_limit(tmp_path):
|
||||
db_path = _make_db(tmp_path)
|
||||
res = extract_text_sample(db_path, _TABLE, ["txt"], sample=2)
|
||||
assert res["status"] == "ok"
|
||||
# sample=2 -> la query lee como mucho 2 filas.
|
||||
assert res["n"] == 2
|
||||
assert len(res["columns"]["txt"]) <= 2
|
||||
@@ -0,0 +1,103 @@
|
||||
---
|
||||
id: missingness_corr_heatmap_figure_py_datascience
|
||||
name: missingness_corr_heatmap_figure
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def missingness_corr_heatmap_figure(matrix, labels, title=\"Co-ocurrencia de ausencias\") -> \"matplotlib.figure.Figure\""
|
||||
description: "Construye una figura matplotlib (heatmap) de la matriz NxN de correlación de ausencias entre columnas: +1 = dos columnas suelen ser nulas a la vez, -1 = cuando una falta la otra está presente, 0 = ausencias independientes. Usa ax.imshow con coolwarm fijado a [-1,1], ticks con los labels truncados (X rotados 45º), colorbar y anota el valor de cada celda si N<=12. Devuelve un matplotlib.figure.Figure listo para rasterizar por el renderer del informe EDA (capítulo de datos faltantes). Backend Agg sin pyplot global; defensivo ante matrix/labels vacíos o celdas no numéricas (nunca lanza)."
|
||||
tags: [eda, missing, missingness, correlation, heatmap, matplotlib, figure, visualization, datascience, impure]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: [matplotlib]
|
||||
example: |
|
||||
from datascience.missingness_corr_heatmap_figure import missingness_corr_heatmap_figure
|
||||
matrix = [
|
||||
[1.0, 0.82, -0.10],
|
||||
[0.82, 1.0, 0.05],
|
||||
[-0.10, 0.05, 1.0],
|
||||
]
|
||||
labels = ["telefono", "movil", "email"]
|
||||
fig = missingness_corr_heatmap_figure(matrix, labels, title="Co-ocurrencia de ausencias")
|
||||
tested: true
|
||||
tests:
|
||||
- "test_returns_figure_with_axes"
|
||||
- "test_empty_matrix_does_not_raise_and_returns_figure"
|
||||
- "test_empty_labels_returns_message_figure"
|
||||
- "test_large_matrix_omits_annotations"
|
||||
- "test_ragged_and_non_numeric_cells_are_handled"
|
||||
test_file_path: "python/functions/datascience/missingness_corr_heatmap_figure_test.py"
|
||||
file_path: "python/functions/datascience/missingness_corr_heatmap_figure.py"
|
||||
params:
|
||||
- name: matrix
|
||||
desc: "Lista de listas (NxN) de floats en [-1,1]: la correlación de ausencias por pares de columnas. Puede venir vacía. Filas de longitud desigual se toleran (se rellenan/recortan a N); celdas None, NaN o no numéricas se coercen a 0.0. No se muta el original."
|
||||
- name: labels
|
||||
desc: "Lista de N nombres de columna, paralela a matrix. Puede venir vacía (devuelve figura \"sin columnas con ausencia variable\"). Se truncan a ~14 chars con elipsis para los ticks; los originales no se mutan."
|
||||
- name: title
|
||||
desc: "Título de la figura. Se trunca a ~60 chars con elipsis si es muy largo. Default \"Co-ocurrencia de ausencias\"."
|
||||
output: "Un matplotlib.figure.Figure (figsize 6.4x5.2, dpi 150) con un Axes heatmap (imshow vmin=-1, vmax=1, cmap coolwarm) más una colorbar etiquetada \"correlación de ausencias\". Ticks en ambos ejes con los labels truncados (X rotados 45º). Si N<=12 cada celda lleva su valor numérico anotado (texto blanco sobre celdas saturadas, oscuro sobre pálidas); con N grande se omiten las anotaciones para no saturar. Si matrix o labels vienen vacíos devuelve una Figure con texto centrado \"sin columnas con ausencia variable\"; cualquier error inesperado se captura y devuelve una Figure con el mensaje de error (nunca lanza). El caller rasteriza/cierra la figura; la función no la muestra ni la guarda."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.missingness_corr_heatmap_figure import missingness_corr_heatmap_figure
|
||||
|
||||
# Correlación de ausencias entre 3 columnas de contacto:
|
||||
# telefono y movil tienden a faltar juntos (0.82); email es casi independiente.
|
||||
matrix = [
|
||||
[1.00, 0.82, -0.10],
|
||||
[0.82, 1.00, 0.05],
|
||||
[-0.10, 0.05, 1.00],
|
||||
]
|
||||
labels = ["telefono", "movil", "email"]
|
||||
|
||||
fig = missingness_corr_heatmap_figure(
|
||||
matrix,
|
||||
labels,
|
||||
title="Co-ocurrencia de ausencias",
|
||||
)
|
||||
|
||||
# El renderer del informe lo rasteriza; aquí solo persistimos para inspección.
|
||||
fig.savefig("/tmp/missingness_heatmap.png")
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala en el capítulo de datos faltantes de un informe EDA cuando quieras ver de
|
||||
un vistazo qué columnas faltan juntas (mismo formulario sin rellenar, mismo
|
||||
proceso roto) frente a columnas cuyas ausencias son independientes. Pásale la
|
||||
matriz de correlación de ausencias (calculada sobre la máscara de nulos, p. ej.
|
||||
`df.isnull().corr()`) restringida a las columnas que de verdad tienen ausencia
|
||||
variable, junto con sus nombres. Es la pareja "estructura" del ranking de % de
|
||||
nulos: las barras dicen *cuánto* falta cada columna, este heatmap dice *si las
|
||||
ausencias están relacionadas* entre columnas.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura por matplotlib.** Toca la maquinaria de render. Usa el backend `Agg`
|
||||
y la API orientada a objetos `Figure`/`add_subplot` — NUNCA `pyplot.*` aquí,
|
||||
para no tocar el estado global ni filtrar figuras entre llamadas. `pyplot` NO
|
||||
es thread-safe; esta función evita ese riesgo construyendo el `Figure`
|
||||
directamente, así que es segura de llamar en bucle desde el renderer.
|
||||
- **El caller cierra la figura.** Devuelve el `Figure` pero no lo muestra ni lo
|
||||
guarda. Quien la consume debe rasterizarla y luego liberarla
|
||||
(`matplotlib.pyplot.close(fig)`) para no acumular memoria en lotes grandes.
|
||||
- **Escala de color fija en [-1, 1].** `vmin=-1`, `vmax=1` están fijados a
|
||||
propósito para que el color sea comparable entre informes y entre columnas. No
|
||||
se autoescala al rango real de la matriz; valores fuera de `[-1, 1]` se
|
||||
saturan al extremo del colormap.
|
||||
- **Anotaciones solo con N<=12.** Por encima de 12 columnas el grid de números
|
||||
se vuelve ilegible y se omite; queda solo el color + la colorbar. Filtra a las
|
||||
columnas con ausencia variable antes de llamar para no llegar a matrices
|
||||
enormes.
|
||||
- **Defensiva, nunca lanza.** `matrix=[]`, `labels=[]`, filas cortas, celdas
|
||||
`None`/`NaN`/no numéricas o cualquier error inesperado se manejan sin propagar:
|
||||
en el peor caso devuelve una `Figure` con "sin columnas con ausencia variable"
|
||||
o con el texto del error. No envuelvas la llamada en try/except por miedo a un
|
||||
raise — no lo hay.
|
||||
@@ -0,0 +1,158 @@
|
||||
"""Impure EDA helper: heatmap of missingness co-occurrence (`eda` group).
|
||||
|
||||
Builds a matplotlib heatmap of the pairwise missingness correlation matrix of a
|
||||
dataset: a value near ``+1`` means two columns tend to be null together, near
|
||||
``-1`` means when one is null the other tends to be present, and ``0`` means
|
||||
their absences are independent. Returns a ready-to-rasterize
|
||||
``matplotlib.figure.Figure``; it never shows nor saves it.
|
||||
|
||||
Impure because it touches matplotlib's rendering machinery. It uses the headless
|
||||
Agg backend and the object-oriented ``Figure`` API (no ``pyplot``) so it leaks no
|
||||
global state and is safe to call repeatedly from a report renderer.
|
||||
"""
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
# Muted gray for secondary text (no-data / fallback messages).
|
||||
_MUTED_TEXT = "#5f6b7a"
|
||||
# Soft red for the error fallback message (kept readable, not alarming).
|
||||
_ERROR_TEXT = "#b00020"
|
||||
|
||||
|
||||
def _truncate(text, width: int = 14) -> str:
|
||||
"""Truncate ``text`` to ``width`` chars, appending an ellipsis if cut."""
|
||||
s = "" if text is None else str(text)
|
||||
if len(s) <= width:
|
||||
return s
|
||||
if width <= 1:
|
||||
return s[:width]
|
||||
return s[: width - 1] + "…"
|
||||
|
||||
|
||||
def _message_figure(message: str, color: str = _MUTED_TEXT) -> "Figure":
|
||||
"""Return a fallback ``Figure`` carrying a single centered message."""
|
||||
fig = Figure(figsize=(6.4, 4.0), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
ax.axis("off")
|
||||
ax.text(
|
||||
0.5,
|
||||
0.5,
|
||||
message,
|
||||
ha="center",
|
||||
va="center",
|
||||
fontsize=12,
|
||||
color=color,
|
||||
wrap=True,
|
||||
transform=ax.transAxes,
|
||||
)
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
|
||||
|
||||
def missingness_corr_heatmap_figure(
|
||||
matrix,
|
||||
labels,
|
||||
title: str = "Co-ocurrencia de ausencias",
|
||||
) -> "matplotlib.figure.Figure":
|
||||
"""Build a heatmap figure of a missingness correlation matrix.
|
||||
|
||||
Renders an ``NxN`` matrix of missingness correlations in ``[-1, 1]`` with a
|
||||
diverging ``coolwarm`` colormap (fixed ``vmin=-1``, ``vmax=1`` so the color
|
||||
scale is comparable across reports). Both axes are tick-labelled with the
|
||||
column names (truncated to ~14 chars; the X labels rotated 45°). A colorbar
|
||||
is attached. When the matrix is small (``N <= 12``) each cell is annotated
|
||||
with its numeric value; for larger matrices the annotations are omitted to
|
||||
avoid an unreadable grid.
|
||||
|
||||
The function is fully defensive: empty/ragged/non-numeric input never raises.
|
||||
When there is nothing valid to draw it returns a ``Figure`` carrying a
|
||||
centered "sin columnas con ausencia variable" message, and any unexpected
|
||||
error is caught and turned into a fallback ``Figure`` carrying the error text.
|
||||
|
||||
Args:
|
||||
matrix: List of lists (``NxN``) of floats in ``[-1, 1]`` — the pairwise
|
||||
missingness correlation. May be empty; rows of unequal length are
|
||||
tolerated by treating the matrix as invalid only when it is empty or
|
||||
its label count does not match. Non-numeric/``None`` cells are
|
||||
coerced to ``0.0``.
|
||||
labels: List of ``N`` column names, parallel to ``matrix``. May be empty.
|
||||
Truncated for display; the originals are not mutated.
|
||||
title: Figure title. Default "Co-ocurrencia de ausencias".
|
||||
|
||||
Returns:
|
||||
A ``matplotlib.figure.Figure`` with a single heatmap Axes plus a
|
||||
colorbar. The caller is responsible for rasterizing/closing it.
|
||||
"""
|
||||
try:
|
||||
# --- Validate shape: need a non-empty square-ish matrix with labels.
|
||||
if (
|
||||
not isinstance(matrix, (list, tuple))
|
||||
or not isinstance(labels, (list, tuple))
|
||||
or len(matrix) == 0
|
||||
or len(labels) == 0
|
||||
):
|
||||
return _message_figure("sin columnas con ausencia variable")
|
||||
|
||||
n = len(labels)
|
||||
# Build a clean NxN grid: coerce each cell to float, default 0.0, pad/clip
|
||||
# rows so a ragged input never crashes imshow.
|
||||
grid = []
|
||||
for i in range(n):
|
||||
row_src = matrix[i] if i < len(matrix) else []
|
||||
if not isinstance(row_src, (list, tuple)):
|
||||
row_src = []
|
||||
row = []
|
||||
for j in range(n):
|
||||
cell = row_src[j] if j < len(row_src) else 0.0
|
||||
try:
|
||||
val = float(cell)
|
||||
except (TypeError, ValueError):
|
||||
val = 0.0
|
||||
if val != val: # NaN guard.
|
||||
val = 0.0
|
||||
row.append(val)
|
||||
grid.append(row)
|
||||
|
||||
fig = Figure(figsize=(6.4, 5.2), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
|
||||
im = ax.imshow(grid, vmin=-1, vmax=1, cmap="coolwarm", aspect="equal")
|
||||
|
||||
short = [_truncate(lab, 14) for lab in labels]
|
||||
ax.set_xticks(range(n))
|
||||
ax.set_yticks(range(n))
|
||||
ax.set_xticklabels(short, rotation=45, ha="right", fontsize=8)
|
||||
ax.set_yticklabels(short, fontsize=8)
|
||||
|
||||
# Annotate each cell only when the grid is small enough to stay legible.
|
||||
if n <= 12:
|
||||
for i in range(n):
|
||||
for j in range(n):
|
||||
val = grid[i][j]
|
||||
# White text over saturated (dark) cells, dark over pale.
|
||||
txt_color = "white" if abs(val) >= 0.55 else "#202020"
|
||||
ax.text(
|
||||
j,
|
||||
i,
|
||||
f"{val:.2f}",
|
||||
ha="center",
|
||||
va="center",
|
||||
fontsize=7,
|
||||
color=txt_color,
|
||||
)
|
||||
|
||||
cbar = fig.colorbar(im, ax=ax, fraction=0.046, pad=0.04)
|
||||
cbar.ax.tick_params(labelsize=8)
|
||||
cbar.set_label("correlación de ausencias", fontsize=8)
|
||||
|
||||
if title:
|
||||
ax.set_title(_truncate(title, 60), fontsize=12, loc="center", pad=10)
|
||||
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
except Exception as exc: # noqa: BLE001 — never raise from a figure builder.
|
||||
return _message_figure(f"error al dibujar heatmap: {exc}", color=_ERROR_TEXT)
|
||||
@@ -0,0 +1,62 @@
|
||||
"""Tests para missingness_corr_heatmap_figure (heatmap de ausencias, grupo eda).
|
||||
|
||||
Usa el backend Agg sin pyplot; no muestra ni guarda figuras. Cada test cierra
|
||||
explícitamente la Figure construida (matplotlib.pyplot.close) para no acumular
|
||||
estado entre tests.
|
||||
"""
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
import matplotlib.pyplot as plt # noqa: E402
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
from missingness_corr_heatmap_figure import missingness_corr_heatmap_figure
|
||||
|
||||
|
||||
def _identity_matrix(n):
|
||||
"""Matriz NxN con diagonal 1.0 y resto 0.0 (correlación de ausencias)."""
|
||||
return [[1.0 if i == j else 0.0 for j in range(n)] for i in range(n)]
|
||||
|
||||
|
||||
def test_returns_figure_with_axes():
|
||||
matrix = [[1.0, 0.3, -0.2], [0.3, 1.0, 0.5], [-0.2, 0.5, 1.0]]
|
||||
labels = ["edad", "ingresos", "ciudad"]
|
||||
fig = missingness_corr_heatmap_figure(matrix, labels, title="ausencias")
|
||||
assert isinstance(fig, Figure)
|
||||
# Heatmap (>=1 axes) + colorbar añade su propio Axes -> al menos 1.
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_empty_matrix_does_not_raise_and_returns_figure():
|
||||
fig = missingness_corr_heatmap_figure([], [], title="vacía")
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_empty_labels_returns_message_figure():
|
||||
fig = missingness_corr_heatmap_figure([[1.0]], [], title="sin labels")
|
||||
assert isinstance(fig, Figure)
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_large_matrix_omits_annotations():
|
||||
n = 16
|
||||
fig = missingness_corr_heatmap_figure(
|
||||
_identity_matrix(n), [f"col_{i}" for i in range(n)]
|
||||
)
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_ragged_and_non_numeric_cells_are_handled():
|
||||
# Fila corta + celda None + celda string -> se rellenan/coercen sin lanzar.
|
||||
matrix = [[1.0, None], ["x", 1.0, 0.5]]
|
||||
labels = ["a", "b"]
|
||||
fig = missingness_corr_heatmap_figure(matrix, labels)
|
||||
assert isinstance(fig, Figure)
|
||||
plt.close(fig)
|
||||
@@ -0,0 +1,68 @@
|
||||
---
|
||||
name: missingness_correlation
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def missingness_correlation(null_mask: dict, top_k: int = 20) -> dict"
|
||||
description: "Co-ocurrencia de ausencias: nucleo del capitulo de missingness del grupo eda. Recibe la mascara binaria de nulos de una tabla (1 = falta, 0 = presente, alineada por fila) y mide hasta que punto las columnas faltan juntas. Calcula la matriz de correlacion de Pearson entre los vectores binarios de ausencia de las columnas con varianza (al menos un 1 y un 0), mas las cifras de solapamiento de conjuntos por par (co-missing, either-missing, Jaccard). Excluye las columnas constantes en su ausencia (correlacion indefinida) y reporta cuantas. Compone la funcion atomica pearson del registry; no la reimplementa. Lectura defensiva; NUNCA lanza."
|
||||
tags: [eda, missingness, correlation, pearson, co-occurrence, jaccard, datascience]
|
||||
params:
|
||||
- name: null_mask
|
||||
desc: "dict {col: [int 0/1, ...]} con la mascara de ausencias de la tabla, alineada por fila: 1 = el valor falta en esa fila, 0 = presente. Todas las listas se asumen de la misma longitud (numero de filas). Valores truthy distintos de 0 se tratan como ausencia; entradas no-lista se ignoran sin romper."
|
||||
- name: top_k
|
||||
desc: "Numero maximo de pares a devolver en `pairs`, ordenados por valor absoluto de correlacion descendente. Default 20. Solo limita la lista de pares; la matriz cubre siempre todas las columnas con varianza."
|
||||
output: "dict con: columns (columnas con varianza en la ausencia, en orden de entrada); matrix (len(columns) x len(columns) de correlacion de Pearson entre las mascaras binarias, diagonal 1.0); pairs (hasta top_k pares i<j ordenados por |corr| desc, cada uno {a, b, corr, co_missing, either_missing, jaccard} donde co_missing = filas en que ambas faltan, either_missing = filas en que al menos una falta, jaccard = co_missing/either_missing o 0.0 si either_missing=0); n_excluded (nº de columnas con algun nulo pero sin varianza, constantes en la ausencia); excluded_cols (esas columnas en orden de entrada). Si hay <2 columnas con varianza, columns/matrix/pairs van vacios pero n_excluded/excluded_cols se rellenan. NUNCA lanza."
|
||||
uses_functions: [pearson_py_datascience]
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: []
|
||||
tested: true
|
||||
tests: ["test_co_ocurrencia_fuerte_corr_uno_jaccard_uno", "test_ausencias_disjuntas_corr_negativa_jaccard_cero", "test_columna_sin_varianza_se_excluye", "test_menos_de_dos_columnas_con_varianza_vacio_pero_cuenta_excluidas", "test_mask_vacio_todo_vacio", "test_top_k_limita_pares", "test_no_lanza_con_entradas_raras"]
|
||||
test_file_path: "python/functions/datascience/missingness_correlation_test.py"
|
||||
file_path: "python/functions/datascience/missingness_correlation.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience.missingness_correlation import missingness_correlation
|
||||
|
||||
# Mascara de ausencias de 6 filas. 1 = falta, 0 = presente.
|
||||
mask = {
|
||||
"ingresos": [1, 0, 1, 0, 1, 0], # falta junto a "deducciones"
|
||||
"deducciones": [1, 0, 1, 0, 1, 0], # mismas filas que "ingresos"
|
||||
"telefono": [0, 0, 0, 1, 0, 0], # casi siempre presente
|
||||
"verificado": [1, 1, 1, 1, 1, 1], # siempre ausente -> constante, excluida
|
||||
}
|
||||
out = missingness_correlation(mask, top_k=10)
|
||||
|
||||
print(out["columns"]) # ['ingresos', 'deducciones', 'telefono']
|
||||
print(out["n_excluded"]) # 1
|
||||
print(out["excluded_cols"]) # ['verificado']
|
||||
|
||||
# El par mas fuerte: ingresos y deducciones faltan siempre juntas.
|
||||
top = out["pairs"][0]
|
||||
print(top["a"], top["b"], round(top["corr"], 3)) # ingresos deducciones 1.0
|
||||
print(top["co_missing"], top["either_missing"], top["jaccard"]) # 3 3 1.0
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
- Usala en el capitulo de **missingness** de `AutomaticEDA` cuando ya tengas la mascara binaria de nulos por columna y quieras detectar **patrones de ausencia conjunta**: que columnas faltan siempre juntas (posible misma fuente/proceso roto) y cuales faltan de forma independiente.
|
||||
- Cuando necesites ordenar los pares de columnas por fuerza de co-ocurrencia (|corr|) para priorizar que bloques de ausencia investigar o imputar juntos.
|
||||
- Cuando quieras la cifra de solapamiento de conjuntos (Jaccard, co-missing) ademas de la correlacion lineal, para distinguir "faltan juntas" de "estan presentes juntas".
|
||||
- Antes de elegir una estrategia de imputacion: dos columnas con corr de ausencia ~1.0 no aportan informacion independiente sobre por que falta la otra.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Funcion pura, sin I/O y determinista. Lectura defensiva: entradas no-dict, columnas no-lista o vacias se ignoran sin lanzar.
|
||||
- Solo entran al calculo las columnas con **varianza en la ausencia** (al menos un 1 y al menos un 0). Una columna siempre-presente (todo 0) no aporta ausencia y **no** se cuenta como excluida; una columna siempre-ausente o constante con nulos (todo 1) tiene correlacion indefinida y se excluye, sumando a `n_excluded` / `excluded_cols`.
|
||||
- Con menos de 2 columnas con varianza, `columns`/`matrix`/`pairs` quedan vacios pero `n_excluded`/`excluded_cols` se rellenan igual — el caller debe contemplar el caso "sin pares".
|
||||
- La correlacion es la de Pearson sobre vectores binarios (equivale al coeficiente phi). El signo importa: corr negativa = las ausencias tienden a ser **complementarias** (cuando una falta, la otra suele estar presente).
|
||||
- Asume todas las listas alineadas por fila y de la misma longitud. Si vienen de longitudes distintas, `pearson` opera sobre el solapamiento que permita `zip` y degrada a 0.0 cuando no hay varianza efectiva; alinea la mascara antes de llamar.
|
||||
@@ -0,0 +1,120 @@
|
||||
"""Co-ocurrencia de ausencias: matriz de correlacion de Pearson entre mascaras de nulos.
|
||||
|
||||
Funcion pura del grupo eda, nucleo del capitulo de missingness. Recibe la mascara
|
||||
binaria de ausencias de una tabla (1 = falta, 0 = presente, alineada por fila) y
|
||||
mide hasta que punto las columnas faltan juntas. Para cada par de columnas con
|
||||
varianza en su ausencia calcula la correlacion de Pearson entre los vectores
|
||||
binarios, mas las cifras de solapamiento de conjuntos (co-missing, either-missing,
|
||||
Jaccard). Compone la funcion atomica `pearson` del registry; no reimplementa la
|
||||
correlacion. Lectura defensiva; NUNCA lanza.
|
||||
"""
|
||||
|
||||
from datascience import pearson
|
||||
|
||||
|
||||
def missingness_correlation(null_mask, top_k=20) -> dict:
|
||||
"""Correlacion de co-ocurrencia de ausencias entre columnas.
|
||||
|
||||
Args:
|
||||
null_mask: dict {col: [int 0/1, ...]} alineado por fila (1 = el valor
|
||||
falta en esa fila). Todas las listas se asumen de la misma longitud.
|
||||
top_k: numero maximo de pares a devolver, ordenados por |corr| desc.
|
||||
|
||||
Returns:
|
||||
dict con:
|
||||
- columns: columnas con varianza en la ausencia (al menos un 1 y al
|
||||
menos un 0), en orden de entrada.
|
||||
- matrix: matriz len(columns) x len(columns) de correlacion de Pearson
|
||||
entre las mascaras binarias, diagonal 1.0.
|
||||
- pairs: lista de hasta top_k pares (i<j) ordenados por |corr| desc.
|
||||
Cada par: {a, b, corr, co_missing, either_missing, jaccard}.
|
||||
- n_excluded: numero de columnas con algun nulo pero sin varianza
|
||||
(constantes en la ausencia: siempre presentes o siempre ausentes).
|
||||
- excluded_cols: lista de esas columnas (en orden de entrada).
|
||||
|
||||
Si hay menos de 2 columnas con varianza, columns/matrix/pairs van vacios
|
||||
pero n_excluded/excluded_cols se rellenan igualmente. NUNCA lanza.
|
||||
"""
|
||||
# Salida base, defensiva ante entradas no-dict.
|
||||
result = {
|
||||
"columns": [],
|
||||
"matrix": [],
|
||||
"pairs": [],
|
||||
"n_excluded": 0,
|
||||
"excluded_cols": [],
|
||||
}
|
||||
|
||||
if not isinstance(null_mask, dict) or not null_mask:
|
||||
return result
|
||||
|
||||
varying = [] # columnas con varianza en la ausencia
|
||||
varying_vecs = [] # sus vectores binarios saneados (floats 0.0/1.0)
|
||||
excluded_cols = [] # columnas con nulos pero sin varianza (constantes)
|
||||
|
||||
for col, raw in null_mask.items():
|
||||
if not isinstance(raw, (list, tuple)):
|
||||
continue
|
||||
# Sanea a 0/1: cualquier valor truthy distinto de 0 cuenta como ausencia.
|
||||
vec = [1 if bool(v) else 0 for v in raw]
|
||||
if not vec:
|
||||
continue
|
||||
ones = sum(vec)
|
||||
zeros = len(vec) - ones
|
||||
if ones > 0 and zeros > 0:
|
||||
varying.append(col)
|
||||
varying_vecs.append([float(v) for v in vec])
|
||||
elif ones > 0:
|
||||
# Tiene nulos pero todos (constante en la ausencia): sin varianza.
|
||||
excluded_cols.append(col)
|
||||
# ones == 0 -> columna siempre presente, sin nulos: no se cuenta como
|
||||
# excluida (no aporta ausencia al analisis de co-ocurrencia).
|
||||
|
||||
result["n_excluded"] = len(excluded_cols)
|
||||
result["excluded_cols"] = excluded_cols
|
||||
|
||||
n = len(varying)
|
||||
if n < 2:
|
||||
return result
|
||||
|
||||
result["columns"] = list(varying)
|
||||
|
||||
# Matriz de correlacion de Pearson, diagonal 1.0.
|
||||
matrix = [[0.0] * n for _ in range(n)]
|
||||
for i in range(n):
|
||||
matrix[i][i] = 1.0
|
||||
for i in range(n):
|
||||
for j in range(i + 1, n):
|
||||
r = pearson(varying_vecs[i], varying_vecs[j])
|
||||
matrix[i][j] = r
|
||||
matrix[j][i] = r
|
||||
result["matrix"] = matrix
|
||||
|
||||
# Pares con cifras de solapamiento de conjuntos.
|
||||
pairs = []
|
||||
for i in range(n):
|
||||
vi = varying_vecs[i]
|
||||
for j in range(i + 1, n):
|
||||
vj = varying_vecs[j]
|
||||
co_missing = 0
|
||||
either_missing = 0
|
||||
for a, b in zip(vi, vj):
|
||||
a_miss = a != 0.0
|
||||
b_miss = b != 0.0
|
||||
if a_miss and b_miss:
|
||||
co_missing += 1
|
||||
if a_miss or b_miss:
|
||||
either_missing += 1
|
||||
jaccard = co_missing / either_missing if either_missing > 0 else 0.0
|
||||
pairs.append({
|
||||
"a": varying[i],
|
||||
"b": varying[j],
|
||||
"corr": matrix[i][j],
|
||||
"co_missing": co_missing,
|
||||
"either_missing": either_missing,
|
||||
"jaccard": jaccard,
|
||||
})
|
||||
|
||||
pairs.sort(key=lambda p: abs(p["corr"]), reverse=True)
|
||||
result["pairs"] = pairs[:top_k] if top_k is not None and top_k >= 0 else pairs
|
||||
|
||||
return result
|
||||
@@ -0,0 +1,115 @@
|
||||
"""Tests para missingness_correlation."""
|
||||
|
||||
from datascience.missingness_correlation import missingness_correlation
|
||||
|
||||
|
||||
def test_co_ocurrencia_fuerte_corr_uno_jaccard_uno():
|
||||
# a y b faltan EXACTAMENTE en las mismas filas -> corr 1.0, jaccard 1.0.
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0, 1, 0],
|
||||
"b": [1, 0, 1, 0, 1, 0],
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == ["a", "b"]
|
||||
assert out["n_excluded"] == 0
|
||||
# Diagonal 1.0, off-diagonal ~1.0.
|
||||
assert out["matrix"][0][0] == 1.0
|
||||
assert out["matrix"][1][1] == 1.0
|
||||
assert abs(out["matrix"][0][1] - 1.0) < 1e-9
|
||||
assert len(out["pairs"]) == 1
|
||||
pair = out["pairs"][0]
|
||||
assert {pair["a"], pair["b"]} == {"a", "b"}
|
||||
assert abs(pair["corr"] - 1.0) < 1e-9
|
||||
assert pair["co_missing"] == 3 # filas 0,2,4
|
||||
assert pair["either_missing"] == 3 # mismas filas
|
||||
assert abs(pair["jaccard"] - 1.0) < 1e-9
|
||||
|
||||
|
||||
def test_ausencias_disjuntas_corr_negativa_jaccard_cero():
|
||||
# a y b nunca faltan en la misma fila -> co_missing 0, jaccard 0, corr <= 0.
|
||||
mask = {
|
||||
"a": [1, 1, 0, 0],
|
||||
"b": [0, 0, 1, 1],
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == ["a", "b"]
|
||||
pair = out["pairs"][0]
|
||||
assert pair["co_missing"] == 0
|
||||
assert pair["either_missing"] == 4
|
||||
assert pair["jaccard"] == 0.0
|
||||
# Solapamiento nulo + ausencias complementarias -> correlacion negativa.
|
||||
assert pair["corr"] < 0.0
|
||||
assert abs(pair["corr"] - out["matrix"][0][1]) < 1e-12
|
||||
|
||||
|
||||
def test_columna_sin_varianza_se_excluye():
|
||||
# c esta siempre presente (todo 0): no aporta ausencia -> no entra ni como
|
||||
# excluida. d esta siempre ausente (todo 1): tiene nulos pero sin varianza
|
||||
# -> excluida y n_excluded incrementa. a y b tienen varianza.
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0],
|
||||
"b": [1, 0, 0, 0],
|
||||
"c": [0, 0, 0, 0], # siempre presente
|
||||
"d": [1, 1, 1, 1], # siempre ausente, constante
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == ["a", "b"]
|
||||
assert "d" in out["excluded_cols"]
|
||||
assert "c" not in out["excluded_cols"]
|
||||
assert out["n_excluded"] == 1
|
||||
# Matriz solo de las columnas con varianza.
|
||||
assert len(out["matrix"]) == 2
|
||||
assert len(out["matrix"][0]) == 2
|
||||
|
||||
|
||||
def test_menos_de_dos_columnas_con_varianza_vacio_pero_cuenta_excluidas():
|
||||
# Solo una columna con varianza (a) + una constante-ausente (d).
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0],
|
||||
"d": [1, 1, 1, 1],
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == []
|
||||
assert out["matrix"] == []
|
||||
assert out["pairs"] == []
|
||||
assert out["n_excluded"] == 1
|
||||
assert out["excluded_cols"] == ["d"]
|
||||
|
||||
|
||||
def test_mask_vacio_todo_vacio():
|
||||
out = missingness_correlation({})
|
||||
assert out == {
|
||||
"columns": [],
|
||||
"matrix": [],
|
||||
"pairs": [],
|
||||
"n_excluded": 0,
|
||||
"excluded_cols": [],
|
||||
}
|
||||
|
||||
|
||||
def test_top_k_limita_pares():
|
||||
# 4 columnas con varianza -> 6 pares; top_k=2 deja 2.
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0, 0],
|
||||
"b": [1, 0, 0, 1, 0],
|
||||
"c": [0, 1, 1, 0, 1],
|
||||
"d": [1, 1, 0, 0, 1],
|
||||
}
|
||||
out = missingness_correlation(mask, top_k=2)
|
||||
assert len(out["columns"]) == 4
|
||||
assert len(out["pairs"]) == 2
|
||||
# Ordenados por |corr| desc.
|
||||
assert abs(out["pairs"][0]["corr"]) >= abs(out["pairs"][1]["corr"])
|
||||
|
||||
|
||||
def test_no_lanza_con_entradas_raras():
|
||||
# Valores no-lista y no-dict no deben romper.
|
||||
assert missingness_correlation(None)["columns"] == []
|
||||
mask = {
|
||||
"a": [1, 0, 1, 0],
|
||||
"b": [1, 0, 1, 0],
|
||||
"bad": "not a list",
|
||||
"empty": [],
|
||||
}
|
||||
out = missingness_correlation(mask)
|
||||
assert out["columns"] == ["a", "b"]
|
||||
@@ -0,0 +1,99 @@
|
||||
---
|
||||
id: missingness_overview_py_datascience
|
||||
name: missingness_overview
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def missingness_overview(null_mask) -> dict"
|
||||
description: "Resumen de ausencias a nivel de dataset a partir de una máscara de nulos 0/1 por columna ({col: [1=falta, 0=presente]} alineada por fila). Calcula celdas y porcentaje de datos faltantes, cuántas columnas tienen algún nulo y cuántas filas son completas vs. incompletas. Estilo dict-no-throw del grupo eda: nunca lanza. Lectura defensiva — no-dict o dict vacío devuelve todo a 0; columnas no-lista se tratan como vacías; listas de longitud distinta se alinean a la longitud máxima rellenando la cola corta como presente (0); valores None/no-int cuentan como presente; sin ZeroDivisionError."
|
||||
tags: [eda, missing, missingness, nulls, profiling, datascience, pure]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: []
|
||||
example: |
|
||||
from datascience.missingness_overview import missingness_overview
|
||||
mask = {
|
||||
"a": [1, 0, 0, 0, 1],
|
||||
"b": [1, 0, 1, 0, 0],
|
||||
"c": [0, 0, 0, 0, 1],
|
||||
}
|
||||
missingness_overview(mask)
|
||||
# n_missing_cells=5, missing_cell_pct≈33.33, complete_rows=2, incomplete_rows=3
|
||||
tested: true
|
||||
tests:
|
||||
- "test_cooccurrence_three_cols_exact"
|
||||
- "test_empty_dict_all_zero"
|
||||
- "test_output_keys_contract"
|
||||
- "test_not_a_dict_returns_zero"
|
||||
- "test_no_nulls_all_complete"
|
||||
- "test_none_values_treated_as_present"
|
||||
- "test_unequal_lengths_pad_with_max"
|
||||
- "test_columns_present_but_no_rows"
|
||||
- "test_never_raises_on_garbage"
|
||||
test_file_path: "python/functions/datascience/missingness_overview_test.py"
|
||||
file_path: "python/functions/datascience/missingness_overview.py"
|
||||
params:
|
||||
- name: null_mask
|
||||
desc: "Dict {col_name: [int 0/1, ...]} con la máscara de nulos por columna, alineada por fila (1 = el valor falta, 0 = el valor está presente). Normalmente todas las listas tienen la misma longitud = nº de filas. Lectura defensiva: si no es dict o está vacío se devuelve todo a 0; columnas cuyo valor no es lista/tupla se tratan como vacías; listas de longitud distinta se alinean a la longitud máxima (las posiciones inexistentes de las columnas más cortas cuentan como presentes, 0); valores None o no enteros cuentan como presentes."
|
||||
output: "Dict con exactamente 9 claves, todas siempre presentes (la función nunca lanza): n_rows (longitud de fila = longitud máxima entre columnas, 0 si vacío), n_cols (nº de columnas), n_cols_with_null (columnas con >=1 falta), n_missing_cells (suma total de 1s), missing_cell_pct (0-100 = n_missing_cells / (n_rows*n_cols) * 100), complete_rows (filas sin ninguna falta), incomplete_rows (filas con >=1 falta), complete_pct (0-100), incomplete_pct (0-100). Los porcentajes son 0.0 cuando el denominador es 0 (sin ZeroDivisionError)."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.missingness_overview import missingness_overview
|
||||
|
||||
# Máscara de nulos por columna: 1 = falta, 0 = presente, alineada por fila.
|
||||
mask = {
|
||||
"a": [1, 0, 0, 0, 1],
|
||||
"b": [1, 0, 1, 0, 0],
|
||||
"c": [0, 0, 0, 0, 1],
|
||||
}
|
||||
|
||||
missingness_overview(mask)
|
||||
# {
|
||||
# "n_rows": 5,
|
||||
# "n_cols": 3,
|
||||
# "n_cols_with_null": 3, # a, b y c tienen al menos una falta
|
||||
# "n_missing_cells": 5, # 2 (a) + 2 (b) + 1 (c)
|
||||
# "missing_cell_pct": 33.33, # 5 / (5*3) * 100
|
||||
# "complete_rows": 2, # filas 1 y 3 sin ninguna falta
|
||||
# "incomplete_rows": 3, # filas 0 (a&b), 2 (b), 4 (a&c)
|
||||
# "complete_pct": 40.0, # 2 / 5 * 100
|
||||
# "incomplete_pct": 60.0, # 3 / 5 * 100
|
||||
# }
|
||||
|
||||
missingness_overview({})
|
||||
# Todo a 0: {"n_rows": 0, "n_cols": 0, "n_cols_with_null": 0,
|
||||
# "n_missing_cells": 0, "missing_cell_pct": 0.0,
|
||||
# "complete_rows": 0, "incomplete_rows": 0,
|
||||
# "complete_pct": 0.0, "incomplete_pct": 0.0}
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala al perfilar un dataset cuando ya tienes una máscara de nulos 0/1 por
|
||||
columna (p. ej. derivada del paso de carga/perfilado del EDA) y quieres la foto
|
||||
global de ausencias en una llamada: cuánta proporción de celdas falta, cuántas
|
||||
columnas están afectadas y, sobre todo, cuántas filas quedan completas vs.
|
||||
incompletas. Es el bloque resumen del capítulo de calidad/missingness de un EDA,
|
||||
y la base para decidir estrategias de imputación o de borrado de filas. Como es
|
||||
pura y dict-no-throw, puedes alimentarla con la máscara tal cual sin validarla
|
||||
antes: entradas malformadas degradan a ceros en vez de romper el pipeline.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **`n_rows` es la longitud máxima entre columnas.** Con listas de longitud
|
||||
desigual, las posiciones que faltan en las columnas más cortas se cuentan como
|
||||
presentes (`0`); no se descartan filas. En el caso normal (todas las listas de
|
||||
igual longitud) `n_rows` es simplemente esa longitud.
|
||||
- **Solo el valor exacto `1` cuenta como falta.** `None`, `0`, cadenas y
|
||||
cualquier otro valor se tratan como presentes. `True` (== 1) también cuenta
|
||||
como falta por la igualdad.
|
||||
- **Porcentajes en escala 0-100**, no fracciones. División por cero protegida:
|
||||
con `n_rows*n_cols == 0` los porcentajes salen `0.0`.
|
||||
@@ -0,0 +1,116 @@
|
||||
"""Pure EDA helper: dataset-level missingness overview from a 0/1 null mask.
|
||||
|
||||
Part of the `eda` capability group. Consumes a per-column null mask
|
||||
(``{col_name: [int 0/1, ...]}`` aligned by row, ``1`` = value is missing,
|
||||
``0`` = value is present) and derives dataset-wide missingness metrics: cell
|
||||
count and percentage of missing data, how many columns carry any null, and how
|
||||
many rows are complete vs. incomplete.
|
||||
|
||||
Dict-no-throw style of the `eda` group: it NEVER raises. A non-dict, an empty
|
||||
dict, malformed columns, ragged lists or non-int cell values all degrade
|
||||
gracefully to the zero/contract output. Stdlib only.
|
||||
|
||||
Ragged-length policy: columns are allowed to have different lengths. ``n_rows``
|
||||
is the **maximum** column length; positions that don't exist in a shorter
|
||||
column are treated as present (``0``). This keeps the ``n_rows * n_cols`` cell
|
||||
grid well defined without dropping rows.
|
||||
"""
|
||||
|
||||
|
||||
def _is_missing(value) -> int:
|
||||
"""Return ``1`` iff ``value`` denotes a missing cell, else ``0``.
|
||||
|
||||
Only an exact equality to ``1`` (covers ``int`` ``1`` and ``float`` ``1.0``)
|
||||
counts as missing. ``None``, ``0``, strings and any other value are treated
|
||||
as present. The comparison cannot raise for standard inputs.
|
||||
"""
|
||||
try:
|
||||
return 1 if value == 1 else 0
|
||||
except Exception:
|
||||
return 0
|
||||
|
||||
|
||||
def missingness_overview(null_mask) -> dict:
|
||||
"""Summarize dataset-level missingness from a 0/1 null mask.
|
||||
|
||||
Args:
|
||||
null_mask: Dict ``{col_name: [int 0/1, ...]}`` where each list is aligned
|
||||
by row (``1`` = missing, ``0`` = present). Lists are normally all the
|
||||
same length (= number of rows). Defensive: a non-dict or empty dict
|
||||
returns the all-zero contract; non-list columns are treated as empty;
|
||||
ragged lists are aligned to the maximum length, padding the missing
|
||||
tail of shorter columns as present (``0``); ``None`` / non-int cells
|
||||
count as present.
|
||||
|
||||
Returns:
|
||||
Dict with exactly these keys, all always present (the function never
|
||||
raises): ``n_rows``, ``n_cols``, ``n_cols_with_null``,
|
||||
``n_missing_cells``, ``missing_cell_pct`` (0-100), ``complete_rows``,
|
||||
``incomplete_rows``, ``complete_pct`` (0-100), ``incomplete_pct``
|
||||
(0-100). Percentages are ``0.0`` when the denominator is zero (no
|
||||
``ZeroDivisionError``).
|
||||
"""
|
||||
zero = {
|
||||
"n_rows": 0,
|
||||
"n_cols": 0,
|
||||
"n_cols_with_null": 0,
|
||||
"n_missing_cells": 0,
|
||||
"missing_cell_pct": 0.0,
|
||||
"complete_rows": 0,
|
||||
"incomplete_rows": 0,
|
||||
"complete_pct": 0.0,
|
||||
"incomplete_pct": 0.0,
|
||||
}
|
||||
|
||||
if not isinstance(null_mask, dict) or not null_mask:
|
||||
return dict(zero)
|
||||
|
||||
# Normalize every column to a list; non-list columns become empty.
|
||||
cols = {}
|
||||
for name, seq in null_mask.items():
|
||||
cols[name] = seq if isinstance(seq, (list, tuple)) else []
|
||||
|
||||
n_cols = len(cols)
|
||||
lengths = [len(seq) for seq in cols.values()]
|
||||
n_rows = max(lengths) if lengths else 0
|
||||
|
||||
if n_rows == 0:
|
||||
# Columns exist but carry no rows: everything zero except n_cols.
|
||||
out = dict(zero)
|
||||
out["n_cols"] = n_cols
|
||||
return out
|
||||
|
||||
n_missing_cells = 0
|
||||
n_cols_with_null = 0
|
||||
row_has_missing = [False] * n_rows
|
||||
|
||||
for seq in cols.values():
|
||||
col_len = len(seq)
|
||||
col_has_null = False
|
||||
for r in range(n_rows):
|
||||
if r < col_len and _is_missing(seq[r]):
|
||||
n_missing_cells += 1
|
||||
row_has_missing[r] = True
|
||||
col_has_null = True
|
||||
if col_has_null:
|
||||
n_cols_with_null += 1
|
||||
|
||||
incomplete_rows = sum(1 for flag in row_has_missing if flag)
|
||||
complete_rows = n_rows - incomplete_rows
|
||||
|
||||
total_cells = n_rows * n_cols
|
||||
missing_cell_pct = (n_missing_cells / total_cells * 100.0) if total_cells else 0.0
|
||||
complete_pct = complete_rows / n_rows * 100.0
|
||||
incomplete_pct = incomplete_rows / n_rows * 100.0
|
||||
|
||||
return {
|
||||
"n_rows": n_rows,
|
||||
"n_cols": n_cols,
|
||||
"n_cols_with_null": n_cols_with_null,
|
||||
"n_missing_cells": n_missing_cells,
|
||||
"missing_cell_pct": missing_cell_pct,
|
||||
"complete_rows": complete_rows,
|
||||
"incomplete_rows": incomplete_rows,
|
||||
"complete_pct": complete_pct,
|
||||
"incomplete_pct": incomplete_pct,
|
||||
}
|
||||
@@ -0,0 +1,146 @@
|
||||
"""Tests para missingness_overview."""
|
||||
|
||||
import sys
|
||||
import os
|
||||
|
||||
import pytest
|
||||
|
||||
sys.path.insert(0, os.path.dirname(__file__))
|
||||
|
||||
from missingness_overview import missingness_overview
|
||||
|
||||
|
||||
# Output contract: every call returns exactly these 9 keys.
|
||||
EXPECTED_KEYS = {
|
||||
"n_rows",
|
||||
"n_cols",
|
||||
"n_cols_with_null",
|
||||
"n_missing_cells",
|
||||
"missing_cell_pct",
|
||||
"complete_rows",
|
||||
"incomplete_rows",
|
||||
"complete_pct",
|
||||
"incomplete_pct",
|
||||
}
|
||||
|
||||
|
||||
def test_cooccurrence_three_cols_exact():
|
||||
# 3 columns, 5 rows. Hand-computed expectations:
|
||||
# col a missing at rows 0, 4 -> 2
|
||||
# col b missing at rows 0, 2 -> 2
|
||||
# col c missing at row 4 -> 1
|
||||
# n_missing_cells = 5, total_cells = 5*3 = 15 -> 33.333...%
|
||||
# row 0 (a&b co-occur) -> incomplete
|
||||
# row 1 (all present) -> complete
|
||||
# row 2 (b only) -> incomplete
|
||||
# row 3 (all present) -> complete
|
||||
# row 4 (a&c co-occur) -> incomplete
|
||||
mask = {
|
||||
"a": [1, 0, 0, 0, 1],
|
||||
"b": [1, 0, 1, 0, 0],
|
||||
"c": [0, 0, 0, 0, 1],
|
||||
}
|
||||
out = missingness_overview(mask)
|
||||
assert out["n_rows"] == 5
|
||||
assert out["n_cols"] == 3
|
||||
assert out["n_cols_with_null"] == 3
|
||||
assert out["n_missing_cells"] == 5
|
||||
assert out["missing_cell_pct"] == pytest.approx(33.33333333, abs=1e-6)
|
||||
assert out["complete_rows"] == 2
|
||||
assert out["incomplete_rows"] == 3
|
||||
assert out["complete_pct"] == pytest.approx(40.0)
|
||||
assert out["incomplete_pct"] == pytest.approx(60.0)
|
||||
|
||||
|
||||
def test_empty_dict_all_zero():
|
||||
out = missingness_overview({})
|
||||
assert out == {
|
||||
"n_rows": 0,
|
||||
"n_cols": 0,
|
||||
"n_cols_with_null": 0,
|
||||
"n_missing_cells": 0,
|
||||
"missing_cell_pct": 0.0,
|
||||
"complete_rows": 0,
|
||||
"incomplete_rows": 0,
|
||||
"complete_pct": 0.0,
|
||||
"incomplete_pct": 0.0,
|
||||
}
|
||||
|
||||
|
||||
def test_output_keys_contract():
|
||||
# The 9-key contract holds even for the garbage/zero path.
|
||||
assert set(missingness_overview({}).keys()) == EXPECTED_KEYS
|
||||
assert set(missingness_overview({"a": [1, 0]}).keys()) == EXPECTED_KEYS
|
||||
|
||||
|
||||
def test_not_a_dict_returns_zero():
|
||||
for bad in (None, [1, 0, 1], 42, "nope", 3.14):
|
||||
out = missingness_overview(bad)
|
||||
assert out["n_rows"] == 0
|
||||
assert out["n_cols"] == 0
|
||||
assert out["n_missing_cells"] == 0
|
||||
assert out["missing_cell_pct"] == 0.0
|
||||
|
||||
|
||||
def test_no_nulls_all_complete():
|
||||
mask = {"a": [0, 0, 0], "b": [0, 0, 0]}
|
||||
out = missingness_overview(mask)
|
||||
assert out["n_rows"] == 3
|
||||
assert out["n_cols"] == 2
|
||||
assert out["n_cols_with_null"] == 0
|
||||
assert out["n_missing_cells"] == 0
|
||||
assert out["missing_cell_pct"] == 0.0
|
||||
assert out["complete_rows"] == 3
|
||||
assert out["incomplete_rows"] == 0
|
||||
assert out["complete_pct"] == pytest.approx(100.0)
|
||||
assert out["incomplete_pct"] == pytest.approx(0.0)
|
||||
|
||||
|
||||
def test_none_values_treated_as_present():
|
||||
# None and other non-1 values count as present (0).
|
||||
mask = {"a": [None, 1, None, "x", 0]}
|
||||
out = missingness_overview(mask)
|
||||
assert out["n_rows"] == 5
|
||||
assert out["n_cols"] == 1
|
||||
assert out["n_missing_cells"] == 1 # only the explicit 1 at row 1
|
||||
assert out["n_cols_with_null"] == 1
|
||||
assert out["complete_rows"] == 4
|
||||
assert out["incomplete_rows"] == 1
|
||||
|
||||
|
||||
def test_unequal_lengths_pad_with_max():
|
||||
# Ragged lists: n_rows = max length; shorter column padded as present.
|
||||
# a = [1, 1] -> missing at rows 0, 1
|
||||
# b = [0] -> row 1 padded to present
|
||||
# n_rows = 2, n_cols = 2, total_cells = 4, n_missing_cells = 2 -> 50%
|
||||
mask = {"a": [1, 1], "b": [0]}
|
||||
out = missingness_overview(mask)
|
||||
assert out["n_rows"] == 2
|
||||
assert out["n_cols"] == 2
|
||||
assert out["n_cols_with_null"] == 1
|
||||
assert out["n_missing_cells"] == 2
|
||||
assert out["missing_cell_pct"] == pytest.approx(50.0)
|
||||
assert out["complete_rows"] == 0
|
||||
assert out["incomplete_rows"] == 2
|
||||
assert out["incomplete_pct"] == pytest.approx(100.0)
|
||||
|
||||
|
||||
def test_columns_present_but_no_rows():
|
||||
# Columns exist but all empty -> zero metrics, n_cols preserved.
|
||||
out = missingness_overview({"a": [], "b": []})
|
||||
assert out["n_rows"] == 0
|
||||
assert out["n_cols"] == 2
|
||||
assert out["n_missing_cells"] == 0
|
||||
assert out["missing_cell_pct"] == 0.0
|
||||
assert out["complete_pct"] == 0.0
|
||||
|
||||
|
||||
def test_never_raises_on_garbage():
|
||||
# Non-list column values, mixed junk -> must not raise.
|
||||
mask = {"a": "not a list", "b": 123, "c": [1, 0, 1]}
|
||||
out = missingness_overview(mask)
|
||||
assert set(out.keys()) == EXPECTED_KEYS
|
||||
assert out["n_rows"] == 3
|
||||
assert out["n_cols"] == 3
|
||||
assert out["n_missing_cells"] == 2 # only col c contributes
|
||||
assert out["n_cols_with_null"] == 1
|
||||
@@ -0,0 +1,93 @@
|
||||
---
|
||||
id: missingness_rank_bar_figure_py_datascience
|
||||
name: missingness_rank_bar_figure
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def missingness_rank_bar_figure(names, pcts, title=\"% de valores faltantes por columna\") -> \"matplotlib.figure.Figure\""
|
||||
description: "Construye una figura matplotlib de barras horizontales que ordena las columnas de un dataset por su porcentaje de valores faltantes (0-100), la mayor arriba, etiquetando cada barra con su NN.N% al final. Usa ax.barh, eje X fijo 0-100 y labels truncados a ~22 chars. Devuelve un matplotlib.figure.Figure listo para rasterizar por el renderer del informe EDA (capítulo de datos faltantes). Backend Agg sin pyplot global; defensivo ante listas vacías, longitudes desiguales o valores no numéricos (nunca lanza)."
|
||||
tags: [eda, missing, missingness, ranking, bar, barh, matplotlib, figure, visualization, datascience, impure]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: [matplotlib]
|
||||
example: |
|
||||
from datascience.missingness_rank_bar_figure import missingness_rank_bar_figure
|
||||
names = ["edad", "ingresos", "ciudad", "email"]
|
||||
pcts = [12.5, 40.0, 3.2, 0.0]
|
||||
fig = missingness_rank_bar_figure(names, pcts, title="% de valores faltantes por columna")
|
||||
tested: true
|
||||
tests:
|
||||
- "test_returns_figure_with_axes"
|
||||
- "test_sorted_descending_largest_on_top"
|
||||
- "test_empty_lists_do_not_raise_and_returns_figure"
|
||||
- "test_xlim_is_zero_to_hundred"
|
||||
- "test_length_mismatch_and_non_numeric_are_handled"
|
||||
test_file_path: "python/functions/datascience/missingness_rank_bar_figure_test.py"
|
||||
file_path: "python/functions/datascience/missingness_rank_bar_figure.py"
|
||||
params:
|
||||
- name: names
|
||||
desc: "Lista de nombres de columna. Puede venir vacía (devuelve figura \"sin datos faltantes\"). Los items se convierten a str y se truncan a ~22 chars con elipsis para las etiquetas del eje Y; los originales no se mutan."
|
||||
- name: pcts
|
||||
desc: "Lista paralela a names con el % de nulos en [0,100]. Valores None, NaN o no numéricos se coercen a 0.0 y los negativos se recortan a 0. Si len(names) != len(pcts) se recorta al menor de ambos para no romper."
|
||||
- name: title
|
||||
desc: "Título de la figura. Se trunca a ~60 chars con elipsis si es muy largo. Default \"% de valores faltantes por columna\"."
|
||||
output: "Un matplotlib.figure.Figure (figsize 6.4 x alto adaptativo según nº de barras, dpi 150) con un Axes de barras horizontales (ax.barh) ordenadas por % descendente, la mayor arriba. Eje X fijado a [0,100] con label \"% faltante\", etiquetas del eje Y truncadas a ~22 chars, y cada barra anotada con su NN.N% al final. Si names o pcts vienen vacíos devuelve una Figure con texto centrado \"sin datos faltantes\"; cualquier error inesperado se captura y devuelve una Figure con el mensaje de error (nunca lanza). El caller rasteriza/cierra la figura; la función no la muestra ni la guarda."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience.missingness_rank_bar_figure import missingness_rank_bar_figure
|
||||
|
||||
# % de nulos por columna (p. ej. (df.isnull().mean() * 100).
|
||||
names = ["edad", "ingresos", "ciudad", "email"]
|
||||
pcts = [12.5, 40.0, 3.2, 0.0]
|
||||
|
||||
fig = missingness_rank_bar_figure(
|
||||
names,
|
||||
pcts,
|
||||
title="% de valores faltantes por columna",
|
||||
)
|
||||
|
||||
# ingresos (40.0%) queda arriba; email (0.0%) abajo.
|
||||
# El renderer del informe lo rasteriza; aquí solo persistimos para inspección.
|
||||
fig.savefig("/tmp/missingness_rank.png")
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala al abrir el capítulo de datos faltantes de un informe EDA para responder
|
||||
"¿qué columnas están más incompletas?" de un vistazo. Pásale los nombres de
|
||||
columna y el % de nulos de cada una (`(df.isnull().mean() * 100).round(1)`); la
|
||||
función se encarga de ordenar de mayor a menor y poner la peor arriba. Es la
|
||||
pareja "magnitud" del heatmap de co-ocurrencia: las barras dicen *cuánto* falta
|
||||
en cada columna, el heatmap dice *si esas ausencias están relacionadas* entre
|
||||
columnas.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura por matplotlib.** Toca la maquinaria de render. Usa el backend `Agg`
|
||||
y la API orientada a objetos `Figure`/`add_subplot` — NUNCA `pyplot.*` aquí,
|
||||
para no tocar el estado global ni filtrar figuras entre llamadas. `pyplot` NO
|
||||
es thread-safe; esta función evita ese riesgo construyendo el `Figure`
|
||||
directamente, así que es segura de llamar en bucle desde el renderer.
|
||||
- **El caller cierra la figura.** Devuelve el `Figure` pero no lo muestra ni lo
|
||||
guarda. Quien la consume debe rasterizarla y luego liberarla
|
||||
(`matplotlib.pyplot.close(fig)`) para no acumular memoria en lotes grandes.
|
||||
- **Espera porcentajes 0-100, no fracciones 0-1.** El eje X está fijado a
|
||||
`[0, 100]`. Si pasas fracciones (`0.4` en vez de `40.0`) las barras saldrán
|
||||
pegadas al origen. Multiplica por 100 antes de llamar.
|
||||
- **Alto adaptativo.** La altura de la figura crece con el número de barras
|
||||
(hasta un tope) para que reports con muchas columnas sigan legibles; aun así,
|
||||
conviene filtrar a las columnas con algún nulo antes de llamar para no listar
|
||||
decenas de barras a 0%.
|
||||
- **Defensiva, nunca lanza.** Listas vacías, longitudes desiguales, valores
|
||||
`None`/`NaN`/no numéricos o cualquier error inesperado se manejan sin propagar:
|
||||
en el peor caso devuelve una `Figure` con "sin datos faltantes" o con el texto
|
||||
del error. No envuelvas la llamada en try/except por miedo a un raise — no lo
|
||||
hay.
|
||||
@@ -0,0 +1,150 @@
|
||||
"""Impure EDA helper: ranked bar figure of missing-value share (`eda` group).
|
||||
|
||||
Builds a horizontal bar chart ranking the columns of a dataset by their
|
||||
percentage of missing values (0-100), largest at the top, each bar labelled with
|
||||
its ``NN.N%`` at the end. Returns a ready-to-rasterize
|
||||
``matplotlib.figure.Figure``; it never shows nor saves it.
|
||||
|
||||
Impure because it touches matplotlib's rendering machinery. It uses the headless
|
||||
Agg backend and the object-oriented ``Figure`` API (no ``pyplot``) so it leaks no
|
||||
global state and is safe to call repeatedly from a report renderer.
|
||||
"""
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
# Muted gray for secondary text (no-data / fallback messages).
|
||||
_MUTED_TEXT = "#5f6b7a"
|
||||
# Soft red for the error fallback message.
|
||||
_ERROR_TEXT = "#b00020"
|
||||
# Bar fill — a calm blue that reads well on white at report size.
|
||||
_BAR_COLOR = "#4C72B0"
|
||||
|
||||
|
||||
def _truncate(text, width: int = 22) -> str:
|
||||
"""Truncate ``text`` to ``width`` chars, appending an ellipsis if cut."""
|
||||
s = "" if text is None else str(text)
|
||||
if len(s) <= width:
|
||||
return s
|
||||
if width <= 1:
|
||||
return s[:width]
|
||||
return s[: width - 1] + "…"
|
||||
|
||||
|
||||
def _message_figure(message: str, color: str = _MUTED_TEXT) -> "Figure":
|
||||
"""Return a fallback ``Figure`` carrying a single centered message."""
|
||||
fig = Figure(figsize=(6.4, 4.0), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
ax.axis("off")
|
||||
ax.text(
|
||||
0.5,
|
||||
0.5,
|
||||
message,
|
||||
ha="center",
|
||||
va="center",
|
||||
fontsize=12,
|
||||
color=color,
|
||||
wrap=True,
|
||||
transform=ax.transAxes,
|
||||
)
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
|
||||
|
||||
def missingness_rank_bar_figure(
|
||||
names,
|
||||
pcts,
|
||||
title: str = "% de valores faltantes por columna",
|
||||
) -> "matplotlib.figure.Figure":
|
||||
"""Build a horizontal ranked bar figure of missing-value share per column.
|
||||
|
||||
Pairs each column name with its missing percentage, sorts by percentage
|
||||
descending and draws horizontal bars with the largest at the top. The X axis
|
||||
is pinned to ``[0, 100]`` so bars are comparable across reports, each bar is
|
||||
annotated with its ``NN.N%`` at the end, and the Y tick labels are truncated
|
||||
to ~22 chars.
|
||||
|
||||
The function is fully defensive: empty/mismatched/non-numeric input never
|
||||
raises. When there is nothing valid to draw it returns a ``Figure`` carrying
|
||||
a centered "sin datos faltantes" message, and any unexpected error is caught
|
||||
and turned into a fallback ``Figure`` carrying the error text.
|
||||
|
||||
Args:
|
||||
names: List of column names. May be empty. Items are stringified and
|
||||
truncated for display; the originals are not mutated.
|
||||
pcts: List parallel to ``names`` of missing-value percentages in
|
||||
``[0, 100]``. Non-numeric/``None`` values are coerced to ``0.0`` and
|
||||
negatives are clamped to ``0``. The list is truncated to
|
||||
``min(len(names), len(pcts))`` so a length mismatch never crashes.
|
||||
title: Figure title. Default "% de valores faltantes por columna".
|
||||
|
||||
Returns:
|
||||
A ``matplotlib.figure.Figure`` with a single horizontal-bar Axes. The
|
||||
caller is responsible for rasterizing/closing it.
|
||||
"""
|
||||
try:
|
||||
if (
|
||||
not isinstance(names, (list, tuple))
|
||||
or not isinstance(pcts, (list, tuple))
|
||||
or len(names) == 0
|
||||
or len(pcts) == 0
|
||||
):
|
||||
return _message_figure("sin datos faltantes")
|
||||
|
||||
# --- Pair names with coerced percentages, tolerating length mismatch.
|
||||
pairs = []
|
||||
for name, pct in zip(names, pcts):
|
||||
try:
|
||||
val = float(pct)
|
||||
except (TypeError, ValueError):
|
||||
val = 0.0
|
||||
if val != val: # NaN guard.
|
||||
val = 0.0
|
||||
val = max(0.0, val)
|
||||
pairs.append((name, val))
|
||||
|
||||
if not pairs:
|
||||
return _message_figure("sin datos faltantes")
|
||||
|
||||
# Sort by percentage descending; barh draws bottom-up, so the largest
|
||||
# ends at the top when we reverse the order before plotting.
|
||||
pairs.sort(key=lambda p: p[1], reverse=True)
|
||||
ordered = list(reversed(pairs)) # smallest first -> largest on top.
|
||||
|
||||
labels = [_truncate(name, 22) for name, _ in ordered]
|
||||
values = [val for _, val in ordered]
|
||||
y_pos = range(len(ordered))
|
||||
|
||||
# Height scales with the number of bars so dense reports stay readable.
|
||||
height = max(2.4, min(0.4 * len(ordered) + 1.2, 14.0))
|
||||
fig = Figure(figsize=(6.4, height), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
|
||||
ax.barh(list(y_pos), values, color=_BAR_COLOR, edgecolor="white")
|
||||
ax.set_yticks(list(y_pos))
|
||||
ax.set_yticklabels(labels, fontsize=8)
|
||||
ax.set_xlim(0, 100)
|
||||
ax.set_xlabel("% faltante", fontsize=9)
|
||||
|
||||
# Annotate each bar with its percentage at the end of the bar.
|
||||
for y, val in zip(y_pos, values):
|
||||
ax.text(
|
||||
min(val + 1.5, 99.0),
|
||||
y,
|
||||
f"{val:.1f}%",
|
||||
va="center",
|
||||
ha="left" if val < 90 else "right",
|
||||
fontsize=7,
|
||||
color="#202020",
|
||||
)
|
||||
|
||||
if title:
|
||||
ax.set_title(_truncate(title, 60), fontsize=12, loc="left", pad=10)
|
||||
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
except Exception as exc: # noqa: BLE001 — never raise from a figure builder.
|
||||
return _message_figure(f"error al dibujar barras: {exc}", color=_ERROR_TEXT)
|
||||
@@ -0,0 +1,64 @@
|
||||
"""Tests para missingness_rank_bar_figure (barras de % faltante, grupo eda).
|
||||
|
||||
Usa el backend Agg sin pyplot; no muestra ni guarda figuras. Cada test cierra
|
||||
explícitamente la Figure construida (matplotlib.pyplot.close) para no acumular
|
||||
estado entre tests.
|
||||
"""
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
import matplotlib.pyplot as plt # noqa: E402
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
from missingness_rank_bar_figure import missingness_rank_bar_figure
|
||||
|
||||
|
||||
def test_returns_figure_with_axes():
|
||||
names = ["edad", "ingresos", "ciudad"]
|
||||
pcts = [12.5, 40.0, 3.2]
|
||||
fig = missingness_rank_bar_figure(names, pcts, title="faltantes")
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_sorted_descending_largest_on_top():
|
||||
names = ["a", "b", "c"]
|
||||
pcts = [10.0, 50.0, 25.0]
|
||||
fig = missingness_rank_bar_figure(names, pcts)
|
||||
ax = fig.axes[0]
|
||||
# barh dibuja de abajo arriba; la mayor (50, "b") debe quedar arriba (mayor y).
|
||||
bars = ax.patches
|
||||
# El último parche (mayor índice y) corresponde a la barra superior.
|
||||
widths = [b.get_width() for b in bars]
|
||||
assert max(widths) == 50.0
|
||||
# La barra con la mayor anchura es la de mayor coordenada y (arriba).
|
||||
top_bar = max(bars, key=lambda b: b.get_y())
|
||||
assert top_bar.get_width() == 50.0
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_empty_lists_do_not_raise_and_returns_figure():
|
||||
fig = missingness_rank_bar_figure([], [], title="vacía")
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_xlim_is_zero_to_hundred():
|
||||
fig = missingness_rank_bar_figure(["a"], [42.0])
|
||||
ax = fig.axes[0]
|
||||
assert ax.get_xlim() == (0.0, 100.0)
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_length_mismatch_and_non_numeric_are_handled():
|
||||
# Más names que pcts + un pct None -> zip recorta y None se coacciona a 0.
|
||||
names = ["a", "b", "c"]
|
||||
pcts = [None, 30.0]
|
||||
fig = missingness_rank_bar_figure(names, pcts)
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
@@ -0,0 +1,65 @@
|
||||
---
|
||||
name: missingness_row_patterns
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: pure
|
||||
signature: "def missingness_row_patterns(null_mask, top_n=10) -> dict"
|
||||
description: "Agrupa las filas de un dataset por su patron de ausencias (estilo matriz de missingno): para cada fila, el patron es la tupla ORDENADA de columnas que faltan en esa fila (las que tienen 1 en el null_mask). Cuenta la frecuencia de cada patron distinto, incluido el patron vacio (fila completa). Devuelve el top_n por frecuencia con su pct sobre el total. Pura, lectura defensiva, NUNCA lanza; {} -> n_rows 0."
|
||||
tags: [eda, missingness, missingno, patterns, profiling, datascience, data-quality]
|
||||
params:
|
||||
- name: null_mask
|
||||
desc: "Dict {col: [0/1, ...]} alineado por fila, donde 1 = la celda falta en esa fila y 0 = presente. Todas las columnas deberian tener la misma longitud (una entrada por fila); si difieren, n_rows es la lista mas larga y las celdas fuera de rango cuentan como presentes. Las claves se ordenan por str(col) para canonizar el patron. {} (o no-dict) -> n_rows 0."
|
||||
- name: top_n
|
||||
desc: "Maximo de patrones devueltos en `patterns`, rankeados por n_rows desc (desempate: menos columnas primero, luego nombres de columna). El recuento total de patrones distintos siempre se reporta en `n_patterns`, no se trunca. Default 10. Valores negativos -> 0; no-int -> 10."
|
||||
output: "Dict {n_rows: int (filas totales), n_patterns: int (patrones distintos, incluye el patron vacio = fila completa), complete_rows: int (filas con patron vacio, nada falta), patterns: lista del top_n ordenada por n_rows desc con [{missing_cols: [col,...] (vacio = fila completa), n_rows: int, pct: float 0-100 sobre n_rows total, redondeado a 2 decimales}]}. Para {} devuelve n_rows 0 y patterns []. NUNCA lanza."
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: ""
|
||||
imports: []
|
||||
tested: true
|
||||
tests: ["test_patron_dominante_completas_singleton", "test_mask_vacio", "test_top_n_trunca_pero_cuenta_todos"]
|
||||
test_file_path: "python/functions/datascience/missingness_row_patterns_test.py"
|
||||
file_path: "python/functions/datascience/missingness_row_patterns.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
import sys, os
|
||||
sys.path.insert(0, os.path.join("python", "functions"))
|
||||
from datascience.missingness_row_patterns import missingness_row_patterns
|
||||
|
||||
# null_mask alineado por fila: 1 = la celda falta en esa fila.
|
||||
null_mask = {
|
||||
"A": [1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
|
||||
"B": [1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
|
||||
"C": [0, 0, 0, 0, 0, 0, 0, 0, 0, 1],
|
||||
}
|
||||
out = missingness_row_patterns(null_mask, top_n=10)
|
||||
print(out["n_rows"], out["n_patterns"], out["complete_rows"]) # 10 3 5
|
||||
for p in out["patterns"]:
|
||||
label = p["missing_cols"] or "(fila completa)"
|
||||
print(label, p["n_rows"], p["pct"])
|
||||
# (fila completa) 5 50.0
|
||||
# ['A', 'B'] 4 40.0
|
||||
# ['C'] 1 10.0
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
- Usala en el capitulo de calidad/ausencias de `AutomaticEDA` para mostrar la "matriz de patrones de missingno": en vez de pintar celda a celda, resume que combinaciones de columnas se quedan en blanco juntas y con que frecuencia.
|
||||
- Cuando ya tengas el null_mask por columna (1=falta) y quieras detectar co-ausencia estructural ("A y B siempre faltan juntas") antes de decidir una imputacion o un drop conjunto de columnas.
|
||||
- Cuando necesites una tabla compacta "patron -> nº filas -> pct" para un report o un grafico de barras de los patrones de ausencia mas comunes, separando ademas cuantas filas estan completas (`complete_rows`).
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Funcion pura, sin I/O y determinista. Lectura defensiva: `{}` o un no-dict devuelven `n_rows` 0 con `patterns` []. NUNCA lanza.
|
||||
- El patron vacio (fila completa, `missing_cols=[]`) SI cuenta como patron: aparece en `n_patterns` y puede aparecer en `patterns`. El consumidor lo etiqueta como "(fila completa)".
|
||||
- `pct` es sobre `n_rows` total (0-100), redondeado a 2 decimales. La suma de los `pct` de TODOS los patrones es 100; si `top_n` trunca, los `pct` mostrados sumaran menos.
|
||||
- Las columnas se ordenan por `str(col)` para canonizar cada patron, asi `{A,B}` y `{B,A}` colapsan al mismo patron `["A", "B"]`.
|
||||
- Una celda cuenta como ausente solo si vale 1 (`int(cell) == 1`); 0, None y valores no numericos se tratan como presentes.
|
||||
- Si las listas de columnas tienen longitudes distintas, `n_rows` es la mas larga y las posiciones fuera de rango de una columna corta cuentan como presentes (0).
|
||||
@@ -0,0 +1,107 @@
|
||||
"""missingness_row_patterns — distinct per-row missingness patterns (missingno matrix style).
|
||||
|
||||
Pure function: no I/O, deterministic, NEVER raises. Given a per-column null mask
|
||||
aligned by row ({col: [0/1, ...]}, 1 = missing), it groups rows by their missing
|
||||
"pattern" — the sorted tuple of column names that are missing in that row — and
|
||||
counts how often each distinct pattern occurs.
|
||||
|
||||
This mirrors the missingno matrix idea: instead of plotting per-cell nullity, it
|
||||
collapses each row to the SET of columns it lacks, surfacing co-missing structure
|
||||
(e.g. "A and B always go missing together"). The empty pattern (a fully complete
|
||||
row) is a first-class pattern and may appear in the result with missing_cols=[];
|
||||
the caller labels it "(fila completa)".
|
||||
"""
|
||||
|
||||
|
||||
def _is_missing(cell) -> bool:
|
||||
"""A cell counts as missing when it equals 1 (truthy 0/1 mask).
|
||||
|
||||
None / 0 / non-numeric are treated as present. Defensive: never raises.
|
||||
"""
|
||||
try:
|
||||
return int(cell) == 1
|
||||
except (TypeError, ValueError):
|
||||
return bool(cell)
|
||||
|
||||
|
||||
def missingness_row_patterns(null_mask, top_n=10) -> dict:
|
||||
"""Count distinct per-row missingness patterns from a column null mask.
|
||||
|
||||
For each row, its pattern is the sorted tuple of column names missing in that
|
||||
row (the columns whose value is 1). The frequency of each distinct pattern is
|
||||
counted, including the empty pattern (a complete row with nothing missing).
|
||||
|
||||
Args:
|
||||
null_mask: Dict {col: [0/1, ...]} aligned by row, where 1 means the cell
|
||||
is missing in that row. Read defensively; columns with differing
|
||||
lengths are tolerated (n_rows is the longest list; out-of-range cells
|
||||
count as present). Empty dict -> n_rows 0.
|
||||
top_n: Maximum number of patterns returned in `patterns`, ranked by
|
||||
n_rows desc (tiebreak: fewer columns first, then column names). The
|
||||
full count of distinct patterns is always reported in `n_patterns`.
|
||||
|
||||
Returns:
|
||||
Dict:
|
||||
{
|
||||
"n_rows": int, # total rows
|
||||
"n_patterns": int, # distinct patterns (incl. the empty pattern)
|
||||
"complete_rows": int, # rows with the empty pattern (nothing missing)
|
||||
"patterns": [ # top_n patterns, n_rows desc
|
||||
{"missing_cols": [col, ...], "n_rows": int, "pct": float} # [] = complete row
|
||||
],
|
||||
}
|
||||
For {} (or a non-dict) returns n_rows 0 and patterns []. NEVER raises.
|
||||
"""
|
||||
empty = {"n_rows": 0, "n_patterns": 0, "complete_rows": 0, "patterns": []}
|
||||
if not isinstance(null_mask, dict) or not null_mask:
|
||||
return empty
|
||||
|
||||
# Stable, canonical column order so each row's pattern tuple is sorted.
|
||||
items = sorted(null_mask.items(), key=lambda kv: str(kv[0]))
|
||||
names = [str(k) for k, _ in items]
|
||||
lists = [v if isinstance(v, (list, tuple)) else [] for _, v in items]
|
||||
|
||||
n_rows = max((len(lst) for lst in lists), default=0)
|
||||
if n_rows == 0:
|
||||
return empty
|
||||
|
||||
# Defensive parsing of top_n.
|
||||
try:
|
||||
limit = int(top_n)
|
||||
except (TypeError, ValueError):
|
||||
limit = 10
|
||||
if limit < 0:
|
||||
limit = 0
|
||||
|
||||
counts: dict = {}
|
||||
n_cols = len(names)
|
||||
for r in range(n_rows):
|
||||
# names is sorted, so iterating in order yields an already-sorted tuple.
|
||||
pattern = tuple(
|
||||
names[c]
|
||||
for c in range(n_cols)
|
||||
if r < len(lists[c]) and _is_missing(lists[c][r])
|
||||
)
|
||||
counts[pattern] = counts.get(pattern, 0) + 1
|
||||
|
||||
complete_rows = counts.get((), 0)
|
||||
n_patterns = len(counts)
|
||||
|
||||
# Rank: n_rows desc, then fewer columns first, then column names (deterministic).
|
||||
ordered = sorted(counts.items(), key=lambda kv: (-kv[1], len(kv[0]), kv[0]))
|
||||
|
||||
patterns = [
|
||||
{
|
||||
"missing_cols": list(pat),
|
||||
"n_rows": cnt,
|
||||
"pct": round(100.0 * cnt / n_rows, 2),
|
||||
}
|
||||
for pat, cnt in ordered[:limit]
|
||||
]
|
||||
|
||||
return {
|
||||
"n_rows": n_rows,
|
||||
"n_patterns": n_patterns,
|
||||
"complete_rows": complete_rows,
|
||||
"patterns": patterns,
|
||||
}
|
||||
@@ -0,0 +1,87 @@
|
||||
"""Tests para missingness_row_patterns."""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
sys.path.insert(0, os.path.dirname(__file__))
|
||||
|
||||
from missingness_row_patterns import missingness_row_patterns
|
||||
|
||||
_EXPECTED_KEYS = {"n_rows", "n_patterns", "complete_rows", "patterns"}
|
||||
|
||||
|
||||
def test_patron_dominante_completas_singleton():
|
||||
"""Golden: {A,B} co-faltan en 4 filas + 5 filas completas + 1 singleton {C}."""
|
||||
# 10 filas. A y B faltan juntas en las filas 0-3; filas 4-8 completas;
|
||||
# la fila 9 solo le falta C.
|
||||
null_mask = {
|
||||
"A": [1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
|
||||
"B": [1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
|
||||
"C": [0, 0, 0, 0, 0, 0, 0, 0, 0, 1],
|
||||
}
|
||||
out = missingness_row_patterns(null_mask)
|
||||
|
||||
assert set(out.keys()) == _EXPECTED_KEYS
|
||||
assert out["n_rows"] == 10
|
||||
# 3 patrones distintos: (A,B), () y (C,).
|
||||
assert out["n_patterns"] == 3
|
||||
# 5 filas completas (filas 4-8).
|
||||
assert out["complete_rows"] == 5
|
||||
|
||||
# Orden: n_rows desc; desempate menos columnas primero.
|
||||
# () tiene 5 filas, (A,B) 4, (C,) 1.
|
||||
pats = out["patterns"]
|
||||
assert len(pats) == 3
|
||||
|
||||
assert pats[0]["missing_cols"] == []
|
||||
assert pats[0]["n_rows"] == 5
|
||||
assert pats[0]["pct"] == 50.0
|
||||
|
||||
assert pats[1]["missing_cols"] == ["A", "B"]
|
||||
assert pats[1]["n_rows"] == 4
|
||||
assert pats[1]["pct"] == 40.0
|
||||
|
||||
assert pats[2]["missing_cols"] == ["C"]
|
||||
assert pats[2]["n_rows"] == 1
|
||||
assert pats[2]["pct"] == 10.0
|
||||
|
||||
# Tipos de salida.
|
||||
assert isinstance(out["n_rows"], int)
|
||||
assert isinstance(pats[0]["pct"], float)
|
||||
|
||||
|
||||
def test_mask_vacio():
|
||||
"""{} -> n_rows 0, sin patrones, nunca lanza."""
|
||||
out = missingness_row_patterns({})
|
||||
assert out == {
|
||||
"n_rows": 0,
|
||||
"n_patterns": 0,
|
||||
"complete_rows": 0,
|
||||
"patterns": [],
|
||||
}
|
||||
# No dict / None tambien degradan a vacio sin lanzar.
|
||||
assert missingness_row_patterns(None)["n_rows"] == 0
|
||||
# Columnas presentes pero listas vacias -> n_rows 0.
|
||||
assert missingness_row_patterns({"A": [], "B": []})["patterns"] == []
|
||||
|
||||
|
||||
def test_top_n_trunca_pero_cuenta_todos():
|
||||
"""top_n limita `patterns`, pero n_patterns reporta TODOS los distintos."""
|
||||
null_mask = {
|
||||
"A": [0, 1, 1, 0, 1],
|
||||
"B": [0, 0, 0, 1, 1],
|
||||
"C": [0, 0, 0, 0, 1],
|
||||
}
|
||||
# Filas: () (A,) (A,) (B,) (A,B,C)
|
||||
out = missingness_row_patterns(null_mask, top_n=2)
|
||||
|
||||
assert out["n_rows"] == 5
|
||||
assert out["n_patterns"] == 4 # (), (A,), (B,), (A,B,C)
|
||||
assert out["complete_rows"] == 1
|
||||
# Solo 2 patrones devueltos pese a haber 4.
|
||||
assert len(out["patterns"]) == 2
|
||||
# (A,) domina con 2 filas; desempate del 2o entre los de 1 fila -> () (0 cols).
|
||||
assert out["patterns"][0]["missing_cols"] == ["A"]
|
||||
assert out["patterns"][0]["n_rows"] == 2
|
||||
assert out["patterns"][1]["missing_cols"] == []
|
||||
assert out["patterns"][1]["n_rows"] == 1
|
||||
@@ -0,0 +1,122 @@
|
||||
---
|
||||
id: relationship_scatter_figure_py_datascience
|
||||
name: relationship_scatter_figure
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def relationship_scatter_figure(xs: list, ys: list, x_label: str = \"\", y_label: str = \"\", classification: dict = None, max_points: int = 2000) -> \"matplotlib.figure.Figure\""
|
||||
description: "Construye una figura matplotlib scatter de un par de variables numéricas con su curva/recta de ajuste y una anotación del tipo de relación (lineal, polinómica grado 2/3, monótona no-lineal, etc.) más sus métricas (r, ρ, R²lin, R²poly). Consume el dict de classify_relationship_type; si es None lo calcula internamente reusando esa función. Devuelve un matplotlib.figure.Figure listo para rasterizar por el renderer del informe EDA (PDF/PPTX). Backend Agg sin pyplot global; downsample determinista de los puntos dibujados; defensivo ante vacío/None."
|
||||
tags: [eda, correlation, scatter, relationship, matplotlib, figure, visualization, datascience, impure]
|
||||
uses_functions: [classify_relationship_type_py_datascience]
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: [matplotlib, numpy]
|
||||
example: |
|
||||
from relationship_scatter_figure import relationship_scatter_figure
|
||||
xs = [float(i) for i in range(100)]
|
||||
ys = [0.5 * x * x - x + 3 for x in xs]
|
||||
classification = {
|
||||
"tipo": "polinómica (grado 2)", "pearson": 0.97, "spearman": 0.99,
|
||||
"r2_linear": 0.92, "r2_poly2": 0.999, "r2_poly3": 0.999,
|
||||
"best_degree": 2, "coeffs": [0.5, -1.0, 3.0],
|
||||
}
|
||||
fig = relationship_scatter_figure(xs, ys, x_label="dosis", y_label="efecto", classification=classification)
|
||||
tested: true
|
||||
tests:
|
||||
- "test_returns_figure"
|
||||
- "test_downsample_determinista"
|
||||
- "test_empty_no_lanza"
|
||||
- "test_classification_none"
|
||||
test_file_path: "python/functions/datascience/relationship_scatter_figure_test.py"
|
||||
file_path: "python/functions/datascience/relationship_scatter_figure.py"
|
||||
params:
|
||||
- name: xs
|
||||
desc: "Lista (o tupla) de valores x. Se emparejan por índice con ys. Valores None, bool, NaN o inf descartan ese par (lectura defensiva)."
|
||||
- name: ys
|
||||
desc: "Lista (o tupla) de valores y, paralela a xs. Mismas reglas defensivas que xs."
|
||||
- name: x_label
|
||||
desc: "Etiqueta del eje/título para la variable x. Default \"\" (en el título cae a \"x\")."
|
||||
- name: y_label
|
||||
desc: "Etiqueta del eje/título para la variable y. Default \"\" (en el título cae a \"y\")."
|
||||
- name: classification
|
||||
desc: "Opcional. Dict de classify_relationship_type con claves tipo, pearson, r2_linear, spearman, r2_poly2, r2_poly3, best_degree, coeffs. Si es None se calcula internamente importando y llamando a classify_relationship_type sobre los pares limpios (self-contained). Si el módulo hermano no está disponible, se dibuja el scatter sin curva de ajuste ni anotación. Default None."
|
||||
- name: max_points
|
||||
desc: "Tope del nº de puntos DIBUJADOS. Si los pares limpios superan el tope, la nube se submuestrea por paso fijo ceil(n/max_points) tomando pairs[::step] — DETERMINISTA, no aleatorio, reproducible. La clasificación/ajuste usa SIEMPRE todos los pares limpios; el downsample solo adelgaza el dibujo. Valor no-positivo o no-int desactiva el downsample. Default 2000."
|
||||
output: "Un matplotlib.figure.Figure (figsize 6.4x4.0, dpi 150) con un Axes scatter (puntos semitransparentes alpha 0.5, color #4C72B0), la curva/recta de ajuste (numpy.polyval sobre coeffs, color #C44E52) cuando hay un ajuste polinómico disponible, título \"{x_label} ↔ {y_label}\", labels de ejes y una caja de anotación en la esquina superior izquierda con el tipo de relación y las métricas disponibles (r, ρ, R²lin, R²poly; se omiten las None). Si tras la limpieza hay menos de 2 pares válidos, devuelve igualmente una Figure con un texto centrado \"Sin datos suficientes para el scatter\" (nunca lanza). El caller rasteriza/cierra la figura; la función no la muestra ni la guarda."
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from relationship_scatter_figure import relationship_scatter_figure
|
||||
|
||||
# Par numérico con relación cuadrática y su clasificación (de
|
||||
# classify_relationship_type). Pasándola explícita evitas recomputarla.
|
||||
xs = [float(i) for i in range(100)]
|
||||
ys = [0.5 * x * x - x + 3 for x in xs]
|
||||
classification = {
|
||||
"tipo": "polinómica (grado 2)",
|
||||
"pearson": 0.97,
|
||||
"spearman": 0.99,
|
||||
"r2_linear": 0.92,
|
||||
"r2_poly2": 0.999,
|
||||
"r2_poly3": 0.999,
|
||||
"best_degree": 2,
|
||||
"coeffs": [0.5, -1.0, 3.0],
|
||||
}
|
||||
|
||||
fig = relationship_scatter_figure(
|
||||
xs, ys, x_label="dosis", y_label="efecto", classification=classification
|
||||
)
|
||||
|
||||
# El renderer del informe lo rasteriza; aquí solo persistimos para inspección.
|
||||
fig.savefig("/tmp/scatter_dosis_efecto.png")
|
||||
|
||||
# Con classification=None la función la calcula internamente (self-contained):
|
||||
fig2 = relationship_scatter_figure(xs, ys, x_label="dosis", y_label="efecto")
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Úsala dentro del informe EDA automático cuando quieras visualizar de un vistazo
|
||||
la relación entre dos variables numéricas: la nube de puntos, la curva que mejor
|
||||
la ajusta y una etiqueta legible del tipo de relación con sus métricas. Es la
|
||||
pareja "vista humana" de `classify_relationship_type`: esa función decide el
|
||||
tipo y los coeficientes; esta los pinta en una `Figure` que el renderer del
|
||||
informe rasteriza a PDF/PPTX. Pásale el dict de clasificación si ya lo tienes
|
||||
calculado (evitas recomputar el ajuste); si no, déjalo en `None` y la función lo
|
||||
resuelve sola sobre los pares limpios. Pensada para móvil: anotación pequeña
|
||||
(fontsize 8) y nube adelgazada por `max_points` para que el PDF no pese.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura por matplotlib.** Toca la maquinaria de render. Usa el backend `Agg`
|
||||
y la API orientada a objetos `Figure`/`add_subplot` — NUNCA `pyplot.*` aquí,
|
||||
para no tocar el estado global ni filtrar figuras entre llamadas. `pyplot` NO
|
||||
es thread-safe; esta función lo evita construyendo el `Figure` directamente,
|
||||
así que es segura de llamar en bucle desde el renderer.
|
||||
- **El caller cierra la figura.** Devuelve el `Figure` pero no lo muestra ni lo
|
||||
guarda. Quien la consume debe rasterizarla y luego liberarla
|
||||
(`matplotlib.pyplot.close(fig)`) para no acumular memoria en lotes grandes de
|
||||
pares de columnas.
|
||||
- **Downsample determinista, solo del dibujo.** Cuando los pares limpios superan
|
||||
`max_points`, la nube DIBUJADA se adelgaza por paso fijo `pairs[::step]`
|
||||
(reproducible, no aleatorio). La clasificación y el ajuste usan SIEMPRE todos
|
||||
los pares limpios; el downsample no altera las métricas ni la curva.
|
||||
- **`classification=None` ⇒ se calcula sola.** Importa y llama a
|
||||
`classify_relationship_type` sobre los pares limpios. Si ese módulo hermano no
|
||||
está disponible (entorno incompleto), NO lanza: dibuja el scatter sin curva de
|
||||
ajuste ni anotación. Pasar la clasificación explícita es más barato (no
|
||||
recomputa el ajuste).
|
||||
- **Sin curva para `monótona no-lineal`.** Cuando `coeffs` es `None` o
|
||||
`best_degree` es `None` (p.ej. tipo "monótona no-lineal"), no se pinta recta
|
||||
polinómica — solo la nube y la anotación. Tampoco se dibuja la curva si el
|
||||
rango de x es nulo (todos los x iguales). Nunca falla por esto.
|
||||
- **Defensiva, nunca lanza.** `xs=[]`, `ys=[]`, menos de 2 pares válidos, ends
|
||||
`None`/`bool`/`NaN`/`inf` o `coeffs` malformado se manejan sin error: en el
|
||||
peor caso devuelve una `Figure` con "Sin datos suficientes para el scatter".
|
||||
No envuelvas la llamada en try/except por miedo a un raise — no lo hay.
|
||||
@@ -0,0 +1,322 @@
|
||||
"""Impure EDA helper: scatter figure of a numeric pair with its fit (`eda` group).
|
||||
|
||||
Builds a matplotlib scatter of two numeric variables, overlays the fitted
|
||||
curve/line implied by the relationship classification (linear, polynomial of
|
||||
degree 2/3, etc.) and annotates the relationship type with its available
|
||||
metrics. Returns a ready-to-rasterize ``matplotlib.figure.Figure``; it never
|
||||
shows nor saves it.
|
||||
|
||||
Impure because it touches matplotlib's rendering machinery. It uses the headless
|
||||
Agg backend and the object-oriented ``Figure`` API (no ``pyplot``) so it leaks no
|
||||
global state and is safe to call repeatedly from a report renderer.
|
||||
|
||||
To keep the rendered PDF/PPTX light on phones, when the number of valid pairs
|
||||
exceeds ``max_points`` the *plotted* points are down-sampled DETERMINISTICALLY by
|
||||
a fixed step (``pairs[::step]``), never randomly, so the output is reproducible.
|
||||
The classification/fit always uses every clean pair; the down-sample only thins
|
||||
the drawn cloud.
|
||||
"""
|
||||
|
||||
import math
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
import numpy as np # noqa: E402
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
# Sober blue for the scatter cloud and red for the fitted curve (Tufte: the
|
||||
# data points are the primary ink, the fit is the secondary highlight).
|
||||
_POINT_COLOR = "#4C72B0"
|
||||
_FIT_COLOR = "#C44E52"
|
||||
# Muted gray for the no-data fallback message.
|
||||
_MUTED_TEXT = "#5f6b7a"
|
||||
|
||||
|
||||
def _finite(value):
|
||||
"""Coerce ``value`` to a finite float, or return None when not usable.
|
||||
|
||||
bool is a subclass of int, but a real numeric measurement is never a bool,
|
||||
so True/False are treated as missing instead of coercing to 1.0/0.0. NaN and
|
||||
+/-infinity are never valid either.
|
||||
"""
|
||||
if value is None or isinstance(value, bool):
|
||||
return None
|
||||
try:
|
||||
f = float(value)
|
||||
except (TypeError, ValueError):
|
||||
return None
|
||||
if math.isnan(f) or math.isinf(f):
|
||||
return None
|
||||
return f
|
||||
|
||||
|
||||
def _clean_pairs(xs, ys):
|
||||
"""Pair ``xs[i], ys[i]`` by index, dropping any pair with a non-finite end."""
|
||||
pairs = []
|
||||
if isinstance(xs, (list, tuple)) and isinstance(ys, (list, tuple)):
|
||||
n = min(len(xs), len(ys))
|
||||
for i in range(n):
|
||||
x = _finite(xs[i])
|
||||
y = _finite(ys[i])
|
||||
if x is None or y is None:
|
||||
continue
|
||||
pairs.append((x, y))
|
||||
return pairs
|
||||
|
||||
|
||||
def _ordered_trend(xs_clean, ys_clean, n_bins: int = 12):
|
||||
"""Return (x_trend, y_trend): the ordered trend of y over x for a monotonic
|
||||
relationship that has no polynomial fit.
|
||||
|
||||
When x has few distinct values (an ordinal/discrete scale) the trend is the
|
||||
mean of y per distinct x value. Otherwise x is split into ``n_bins`` ordered
|
||||
quantile bins and each point is (mean x, mean y) of the bin. Returns
|
||||
``(None, None)`` when there is nothing meaningful to draw.
|
||||
"""
|
||||
x_arr = np.asarray(xs_clean, dtype=float)
|
||||
y_arr = np.asarray(ys_clean, dtype=float)
|
||||
if x_arr.size < 2:
|
||||
return None, None
|
||||
uniq = np.unique(x_arr)
|
||||
if uniq.size <= max(2, n_bins):
|
||||
# Discrete x: one trend point per distinct value (mean y).
|
||||
xt = uniq
|
||||
yt = np.array([float(np.mean(y_arr[x_arr == ux])) for ux in uniq])
|
||||
return xt, yt
|
||||
# Continuous x: ordered quantile bins, (mean x, mean y) per bin.
|
||||
order = np.argsort(x_arr, kind="stable")
|
||||
x_sorted = x_arr[order]
|
||||
y_sorted = y_arr[order]
|
||||
chunks_x = np.array_split(x_sorted, n_bins)
|
||||
chunks_y = np.array_split(y_sorted, n_bins)
|
||||
xt = np.array([float(np.mean(cx)) for cx in chunks_x if cx.size])
|
||||
yt = np.array([float(np.mean(cy)) for cy in chunks_y if cy.size])
|
||||
return xt, yt
|
||||
|
||||
|
||||
def _no_data_figure(message: str) -> "matplotlib.figure.Figure":
|
||||
"""A bare Figure carrying a centered muted message (defensive fallback)."""
|
||||
fig = Figure(figsize=(6.4, 4.0), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
ax.axis("off")
|
||||
ax.text(
|
||||
0.5,
|
||||
0.5,
|
||||
message,
|
||||
ha="center",
|
||||
va="center",
|
||||
fontsize=12,
|
||||
color=_MUTED_TEXT,
|
||||
transform=ax.transAxes,
|
||||
)
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
|
||||
|
||||
def _metrics_caption(classification: dict) -> str:
|
||||
"""Format the available metrics of a classification dict into one line.
|
||||
|
||||
Omits the metrics that are None. Keys consumed (any may be absent/None):
|
||||
``pearson`` (r), ``spearman`` (rho), ``r2_linear`` (R²lin) and the best
|
||||
polynomial R² (``r2_poly3`` if a cubic was the best fit, else ``r2_poly2``).
|
||||
"""
|
||||
parts = []
|
||||
r = _finite(classification.get("pearson"))
|
||||
if r is not None:
|
||||
parts.append(f"r={r:.2f}")
|
||||
rho = _finite(classification.get("spearman"))
|
||||
if rho is not None:
|
||||
parts.append(f"ρ={rho:.2f}")
|
||||
r2_lin = _finite(classification.get("r2_linear"))
|
||||
if r2_lin is not None:
|
||||
parts.append(f"R²lin={r2_lin:.2f}")
|
||||
# Prefer the R² of the best polynomial degree when it is a poly fit.
|
||||
best_degree = classification.get("best_degree")
|
||||
r2_poly = None
|
||||
if best_degree == 3:
|
||||
r2_poly = _finite(classification.get("r2_poly3"))
|
||||
elif best_degree == 2:
|
||||
r2_poly = _finite(classification.get("r2_poly2"))
|
||||
if r2_poly is None:
|
||||
# Fall back to whichever poly R² is present (cubic first).
|
||||
r2_poly = _finite(classification.get("r2_poly3"))
|
||||
if r2_poly is None:
|
||||
r2_poly = _finite(classification.get("r2_poly2"))
|
||||
if r2_poly is not None:
|
||||
parts.append(f"R²poly={r2_poly:.2f}")
|
||||
return " ".join(parts)
|
||||
|
||||
|
||||
def relationship_scatter_figure(
|
||||
xs: list,
|
||||
ys: list,
|
||||
x_label: str = "",
|
||||
y_label: str = "",
|
||||
classification: dict = None,
|
||||
max_points: int = 2000,
|
||||
) -> "matplotlib.figure.Figure":
|
||||
"""Build a scatter figure of a numeric pair with its fit and a type label.
|
||||
|
||||
Cleans the pairs defensively (drops any pair with a None/bool/NaN/inf end),
|
||||
plots a semi-transparent scatter cloud (down-sampled deterministically when
|
||||
it exceeds ``max_points``), overlays the polynomial fit implied by
|
||||
``classification`` and annotates the relationship type plus its available
|
||||
metrics in a corner box.
|
||||
|
||||
The fit and classification always use every clean pair; only the drawn cloud
|
||||
is thinned by the down-sample. When ``classification`` is None it is computed
|
||||
internally by reusing ``classify_relationship_type`` over the clean pairs, so
|
||||
the function is self-contained.
|
||||
|
||||
The function is fully defensive: empty input, fewer than 2 clean pairs, a
|
||||
missing/None ``coeffs`` or a missing sibling classifier never raise. When
|
||||
there is nothing valid to draw it still returns a ``Figure`` carrying a
|
||||
centered "Sin datos suficientes para el scatter" message.
|
||||
|
||||
Args:
|
||||
xs: List (or tuple) of x values. Paired by index with ``ys``. Values that
|
||||
are None, bool, NaN or infinite discard that pair. Read defensively.
|
||||
ys: List (or tuple) of y values, parallel to ``xs``. Same defensive rules.
|
||||
x_label: Axis/title label for the x variable. Default "" (falls back to
|
||||
"x" in the title).
|
||||
y_label: Axis/title label for the y variable. Default "" (falls back to
|
||||
"y" in the title).
|
||||
classification: Optional dict from ``classify_relationship_type`` with
|
||||
keys ``tipo, pearson, r2_linear, spearman, r2_poly2, r2_poly3,
|
||||
best_degree, coeffs``. When None, it is computed internally by
|
||||
importing and calling ``classify_relationship_type`` over the clean
|
||||
pairs. When that sibling module is unavailable, the scatter is still
|
||||
drawn (no fit curve, no annotation).
|
||||
max_points: Cap on the number of *plotted* points. When the number of
|
||||
clean pairs exceeds this cap, the drawn cloud is down-sampled by a
|
||||
fixed step ``ceil(n/max_points)`` taking ``pairs[::step]`` —
|
||||
DETERMINISTIC, not random, so the figure is reproducible. A
|
||||
non-positive or non-int value disables down-sampling. Default 2000.
|
||||
|
||||
Returns:
|
||||
A ``matplotlib.figure.Figure`` (figsize 6.4x4.0, dpi 150) with a single
|
||||
scatter Axes, the fitted curve (when a polynomial fit is available) and a
|
||||
corner annotation with the relationship type and metrics. When there are
|
||||
fewer than 2 clean pairs it returns a Figure with a centered "Sin datos
|
||||
suficientes para el scatter" message. The caller rasterizes/closes it.
|
||||
"""
|
||||
pairs = _clean_pairs(xs, ys)
|
||||
if len(pairs) < 2:
|
||||
return _no_data_figure("Sin datos suficientes para el scatter")
|
||||
|
||||
# Full clean coordinates feed the classification/fit; the plotted cloud is
|
||||
# what gets thinned.
|
||||
xs_clean = [p[0] for p in pairs]
|
||||
ys_clean = [p[1] for p in pairs]
|
||||
|
||||
# Resolve the classification. If not provided, reuse the sibling classifier
|
||||
# over ALL clean pairs (self-contained). Missing module => no fit/annotation.
|
||||
cls = classification
|
||||
if cls is None:
|
||||
try:
|
||||
from classify_relationship_type import classify_relationship_type
|
||||
|
||||
cls = classify_relationship_type(xs_clean, ys_clean)
|
||||
except Exception:
|
||||
cls = None
|
||||
if not isinstance(cls, dict):
|
||||
cls = {}
|
||||
|
||||
# --- Deterministic down-sampling of the DRAWN points only.
|
||||
n_total = len(pairs)
|
||||
if (
|
||||
isinstance(max_points, int)
|
||||
and not isinstance(max_points, bool)
|
||||
and max_points > 0
|
||||
and n_total > max_points
|
||||
):
|
||||
step = math.ceil(n_total / max_points)
|
||||
sampled = pairs[::step]
|
||||
else:
|
||||
sampled = pairs
|
||||
|
||||
x_plot = [p[0] for p in sampled]
|
||||
y_plot = [p[1] for p in sampled]
|
||||
|
||||
fig = Figure(figsize=(6.4, 4.0), dpi=150)
|
||||
ax = fig.add_subplot(111)
|
||||
|
||||
ax.scatter(
|
||||
x_plot,
|
||||
y_plot,
|
||||
s=12,
|
||||
alpha=0.5,
|
||||
color=_POINT_COLOR,
|
||||
edgecolors="none",
|
||||
rasterized=True,
|
||||
)
|
||||
|
||||
# --- Fitted curve/line over the full clean x range.
|
||||
coeffs = cls.get("coeffs")
|
||||
best_degree = cls.get("best_degree")
|
||||
tipo = cls.get("tipo")
|
||||
x_min, x_max = min(xs_clean), max(xs_clean)
|
||||
drew_fit = False
|
||||
if coeffs is not None and best_degree is not None and x_max > x_min:
|
||||
try:
|
||||
coeff_arr = np.asarray(coeffs, dtype=float)
|
||||
if coeff_arr.ndim == 1 and coeff_arr.size > 0 and np.all(np.isfinite(coeff_arr)):
|
||||
x_line = np.linspace(x_min, x_max, 200)
|
||||
y_line = np.polyval(coeff_arr, x_line)
|
||||
if np.all(np.isfinite(y_line)):
|
||||
ax.plot(x_line, y_line, color=_FIT_COLOR, linewidth=2)
|
||||
drew_fit = True
|
||||
except Exception:
|
||||
# Never fail the figure because of a malformed coeffs array.
|
||||
pass
|
||||
|
||||
# A monotonic non-linear relationship has no fitted polynomial (coeffs is
|
||||
# None by design — a low-degree polynomial would mislead). Draw instead the
|
||||
# ordered trend of y over x so the reader still sees the shape: y averaged
|
||||
# within ordered x-bins (or per distinct x value when x is discrete with few
|
||||
# levels, e.g. an ordinal scale). Defensive: any failure leaves the cloud.
|
||||
if (not drew_fit and isinstance(tipo, str) and "monóton" in tipo.lower()
|
||||
and x_max > x_min):
|
||||
try:
|
||||
xt, yt = _ordered_trend(xs_clean, ys_clean)
|
||||
if xt is not None and len(xt) >= 2:
|
||||
ax.plot(xt, yt, color=_FIT_COLOR, linewidth=2, marker="o",
|
||||
markersize=3)
|
||||
except Exception:
|
||||
pass
|
||||
|
||||
# --- Labels and title.
|
||||
tx = x_label if x_label else "x"
|
||||
ty = y_label if y_label else "y"
|
||||
ax.set_title(f"{tx} ↔ {ty}", fontsize=12, loc="left", pad=8)
|
||||
ax.set_xlabel(x_label)
|
||||
ax.set_ylabel(y_label)
|
||||
|
||||
# --- Corner annotation: relationship type + available metrics.
|
||||
caption_lines = []
|
||||
if tipo:
|
||||
caption_lines.append(str(tipo))
|
||||
metrics_line = _metrics_caption(cls)
|
||||
if metrics_line:
|
||||
caption_lines.append(metrics_line)
|
||||
if caption_lines:
|
||||
ax.text(
|
||||
0.03,
|
||||
0.97,
|
||||
"\n".join(caption_lines),
|
||||
transform=ax.transAxes,
|
||||
ha="left",
|
||||
va="top",
|
||||
fontsize=8,
|
||||
bbox=dict(
|
||||
boxstyle="round,pad=0.35",
|
||||
facecolor="white",
|
||||
edgecolor="#cccccc",
|
||||
alpha=0.85,
|
||||
),
|
||||
)
|
||||
|
||||
fig.tight_layout()
|
||||
return fig
|
||||
@@ -0,0 +1,100 @@
|
||||
"""Tests para relationship_scatter_figure (scatter de un par numérico, grupo eda).
|
||||
|
||||
Usa el backend Agg sin pyplot global; no muestra ni guarda figuras. Cada test
|
||||
cierra explícitamente la Figure construida (matplotlib.pyplot.close) para no
|
||||
acumular estado entre tests.
|
||||
"""
|
||||
|
||||
import os
|
||||
import sys
|
||||
|
||||
sys.path.insert(0, os.path.dirname(__file__))
|
||||
|
||||
import matplotlib
|
||||
|
||||
matplotlib.use("Agg")
|
||||
|
||||
import matplotlib.pyplot as plt # noqa: E402
|
||||
from matplotlib.collections import PathCollection # noqa: E402
|
||||
from matplotlib.figure import Figure # noqa: E402
|
||||
|
||||
from relationship_scatter_figure import relationship_scatter_figure
|
||||
|
||||
|
||||
def _scatter_offsets(fig):
|
||||
"""Return the plotted points of the first PathCollection (scatter) found."""
|
||||
for ax in fig.axes:
|
||||
for coll in ax.collections:
|
||||
if isinstance(coll, PathCollection):
|
||||
return coll.get_offsets()
|
||||
return None
|
||||
|
||||
|
||||
def test_returns_figure():
|
||||
xs = [float(i) for i in range(20)]
|
||||
ys = [2.0 * x + 1.0 for x in xs] # y = 2x + 1
|
||||
classification = {
|
||||
"tipo": "lineal",
|
||||
"pearson": 1.0,
|
||||
"r2_linear": 1.0,
|
||||
"spearman": 1.0,
|
||||
"r2_poly2": 1.0,
|
||||
"r2_poly3": 1.0,
|
||||
"best_degree": 1,
|
||||
"coeffs": [2.0, 1.0],
|
||||
}
|
||||
fig = relationship_scatter_figure(
|
||||
xs, ys, x_label="a", y_label="b", classification=classification
|
||||
)
|
||||
assert hasattr(fig, "savefig")
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_downsample_determinista():
|
||||
n = 5000
|
||||
xs = [float(i) for i in range(n)]
|
||||
ys = [0.5 * x for x in xs]
|
||||
classification = {
|
||||
"tipo": "lineal",
|
||||
"pearson": 1.0,
|
||||
"r2_linear": 1.0,
|
||||
"spearman": 1.0,
|
||||
"r2_poly2": 1.0,
|
||||
"r2_poly3": 1.0,
|
||||
"best_degree": 1,
|
||||
"coeffs": [0.5, 0.0],
|
||||
}
|
||||
fig = relationship_scatter_figure(
|
||||
xs, ys, x_label="x", y_label="y", classification=classification, max_points=1000
|
||||
)
|
||||
assert isinstance(fig, Figure)
|
||||
offsets = _scatter_offsets(fig)
|
||||
assert offsets is not None
|
||||
# El nº de puntos dibujados no debe exceder el cap.
|
||||
assert len(offsets) <= 1000
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_empty_no_lanza():
|
||||
fig = relationship_scatter_figure([], [], x_label="x", y_label="y")
|
||||
assert isinstance(fig, Figure)
|
||||
plt.close(fig)
|
||||
|
||||
|
||||
def test_classification_none():
|
||||
# Solo se ejecuta si el módulo hermano classify_relationship_type existe.
|
||||
try:
|
||||
import classify_relationship_type # noqa: F401
|
||||
except Exception:
|
||||
import pytest
|
||||
|
||||
pytest.skip("classify_relationship_type aún no disponible")
|
||||
xs = [float(i) for i in range(30)]
|
||||
ys = [3.0 * x - 2.0 for x in xs]
|
||||
fig = relationship_scatter_figure(
|
||||
xs, ys, x_label="a", y_label="b", classification=None
|
||||
)
|
||||
assert isinstance(fig, Figure)
|
||||
assert len(fig.axes) >= 1
|
||||
plt.close(fig)
|
||||
@@ -0,0 +1,89 @@
|
||||
---
|
||||
name: render_automatic_eda_markdown
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
purity: impure
|
||||
signature: "def render_automatic_eda_markdown(chapters_or_profile, out_path: str, meta: dict = None) -> dict"
|
||||
description: "Renderiza un documento AutomaticEDA por CAPÍTULOS (modelo de bloques independiente del formato) en un único MARKDOWN autocontenido pensado para PEGAR A UN LLM. Acepta una lista de capítulos del modelo o directamente un TableProfile del grupo eda (construye los capítulos canónicos con build_document). Prioriza TEXTO + DATOS sobre lo visual: las tablas se vuelcan como tablas markdown con TODAS las filas (sin paginar — no hay páginas que cortar), una figura matplotlib se reduce a su caption más la tabla de datos subyacente (Desde/Hasta/Frecuencia de las barras del histograma) porque un LLM no ve la imagen, y los marcadores de glosario se eliminan conservando el **negrita**. Lleva cabecera (# título), bloque de metadatos en blockquote e índice numerado con anclas GitHub. Espejo de render_automatic_eda_pdf/render_automatic_eda_pptx pero SIN manifest (KISS, el markdown es un único artefacto de texto). dict-no-throw: nunca lanza, devuelve {path, n_chars, chapters, note}; en error fatal path es None y note explica la causa. Flag opcional meta['embed_figures'] exporta PNGs junto al .md (off por defecto)."
|
||||
tags: [eda, markdown, render, report, llm, automatic-eda, chapters, versioned, no-cut, text, datascience, python]
|
||||
uses_functions: []
|
||||
uses_types: []
|
||||
returns: []
|
||||
returns_optional: false
|
||||
error_type: "error_go_core"
|
||||
imports: [os, re, matplotlib, "datascience.automatic_eda"]
|
||||
params:
|
||||
- name: chapters_or_profile
|
||||
desc: "una lista de capítulos del modelo AutomaticEDA (dataclasses Chapter o dicts {id,title,version,blocks}) O un TableProfile dict del grupo eda. Si es un TableProfile, los capítulos canónicos se construyen con build_document(profile, meta['ctx']). Bloques soportados: heading, markdown, kv_table, data_table, figure, image, caption, note, group, glossary_entry. Lectura defensiva: lo no reconocido se degrada a Note, nunca lanza."
|
||||
- name: out_path
|
||||
desc: "ruta del archivo .md de salida. Los directorios padre se crean si faltan. Directorio no escribible → {path:None, note:<causa>} sin lanzar."
|
||||
- name: meta
|
||||
desc: "dict opcional. Claves: title (título del documento), ctx (dict con dataset_name→Dataset, source_origin→Fuente, storage→Almacenamiento, n_rows/n_cols→Dimensiones; también lo consumen los builders de capítulo cuando se da un profile), generated_at (timestamp; si falta se genera ISO UTC), embed_figures (True para exportar PNGs <basename>_figN.png junto al .md; por defecto False y el markdown queda autocontenido)."
|
||||
output: "dict (nunca lanza): {path: str|None, n_chars: int, chapters: list[{id,version}], note: str}. En error fatal (p.ej. directorio no escribible) path es None y note explica la causa. Un documento sin capítulos aplicables produce un markdown mínimo válido con 'documento vacío' y chapters=[]."
|
||||
tested: true
|
||||
tests: ["test_golden_bloques_sinteticos_serializa_todo_a_markdown", "test_edge_documento_vacio_no_revienta", "test_profile_path_construye_capitulos_y_escribe"]
|
||||
test_file_path: "python/functions/datascience/render_automatic_eda_markdown_test.py"
|
||||
file_path: "python/functions/datascience/render_automatic_eda_markdown.py"
|
||||
---
|
||||
|
||||
## Ejemplo
|
||||
|
||||
```python
|
||||
from datascience import render_automatic_eda_markdown
|
||||
|
||||
# Desde un TableProfile del grupo eda (mismo modelo que los renderers PDF/PPTX).
|
||||
profile = {
|
||||
"table": "ventas", "source": "/data/ventas.csv",
|
||||
"n_rows": 1000, "n_cols": 2, "quality_score": 92.5,
|
||||
"columns": [
|
||||
{"name": "precio", "inferred_type": "numeric", "null_pct": 0.01,
|
||||
"numeric": {"mean": 42.5, "median": 40.0, "min": 1.0, "max": 100.0,
|
||||
"std": 12.3}},
|
||||
{"name": "categoria", "inferred_type": "categorical", "null_pct": 0.0,
|
||||
"categorical": {"top": [{"value": "neumaticos", "count": 500}]}},
|
||||
],
|
||||
}
|
||||
res = render_automatic_eda_markdown(
|
||||
profile, "reports/ventas_aeda.md",
|
||||
{"title": "EDA — ventas",
|
||||
"ctx": {"dataset_name": "Ventas", "source_origin": "ERP export",
|
||||
"n_rows": 1000, "n_cols": 2}})
|
||||
print(res["path"], res["n_chars"], res["chapters"])
|
||||
# -> reports/ventas_aeda.md 4123 [{'id':'portada','version':'1.0.0'}, ...]
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
|
||||
Cuando quieras **pegar el EDA a un LLM** (ChatGPT, Claude, ...) o tenerlo en texto
|
||||
plano versionable: mismo documento por capítulos que el PDF/PPTX, pero serializado a
|
||||
Markdown sin binarios. Úsala como tercera salida junto a `render_automatic_eda_pdf`
|
||||
(móvil) y `render_automatic_eda_pptx` (compartir) desde el MISMO modelo de capítulos.
|
||||
A diferencia de esas dos, no hay páginas ni slides: todas las filas de cada tabla se
|
||||
vuelcan (nada se corta) y cada figura se reduce a su caption + la tabla de datos
|
||||
subyacente, que es lo que un LLM puede leer. Para añadir capítulos al documento, ver
|
||||
`docs/capabilities/automatic_eda.md`.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- **Impura**: escribe el `.md` en `out_path` (crea los directorios padre). Con
|
||||
`meta['embed_figures']=True` además exporta un PNG `<basename>_figN.png` por figura
|
||||
junto al `.md`; por defecto NO exporta nada y el markdown queda autocontenido.
|
||||
- **Nunca lanza** (dict-no-throw): un bloque que falle se degrada a una nota y se anota
|
||||
en `note`; el documento se escribe igual. Un profile/lista vacíos producen un markdown
|
||||
mínimo válido con `*(documento vacío …)*` y `chapters=[]`.
|
||||
- **Figuras = datos, no imagen**: un bloque `figure` se serializa como `*Figura: caption*`
|
||||
más, si la figura matplotlib trae barras (histograma / barras), una tabla
|
||||
`| Desde | Hasta | Frecuencia |` extraída de los `Rectangle` patches (máx 100 filas;
|
||||
el resto se trunca con `*… (N filas más)*`). Si no hay barras o algo falla, solo sale
|
||||
el caption. La figura se cierra (`plt.close`) tras leerla.
|
||||
- **Glosario vs negrita**: se eliminan SOLO los marcadores de glosario
|
||||
`[[term:key]]visible[[/term]]` (queda `visible`); el `**negrita**` markdown SE
|
||||
CONSERVA (es válido). No se usa `strip_inline_md` aquí porque ese también quita el bold.
|
||||
- **Anclas del índice**: el `## Índice` enlaza cada capítulo con un ancla estilo GitHub
|
||||
del encabezado `## N. Título` (minúsculas, espacios→`-`, sin signos). Si dos capítulos
|
||||
comparten título exacto sus anclas colisionan (caso raro; los capítulos canónicos tienen
|
||||
títulos únicos).
|
||||
- **Tablas**: las celdas escapan `|` (→ `\|`) y pliegan saltos de línea a `<br>` para no
|
||||
romper la columna. No hay reparto por ancho — un LLM no lo necesita.
|
||||
@@ -0,0 +1,55 @@
|
||||
"""render_automatic_eda_markdown — chapter-based EDA report as one Markdown file.
|
||||
|
||||
Public ``eda``-group entry point that serializes an AutomaticEDA document (a list
|
||||
of chapters, or an ``eda`` TableProfile from which the canonical chapters are
|
||||
built) into a single self-contained Markdown file optimised to be **pasted into
|
||||
an LLM**: plain text, Markdown tables (every row dumped — there are no pages to
|
||||
cut), figures reduced to caption + underlying data, no binaries. It mirrors
|
||||
``render_automatic_eda_pdf`` / ``render_automatic_eda_pptx`` but for text output;
|
||||
unlike those it writes no manifest (KISS — Markdown is a single text artefact).
|
||||
|
||||
dict-no-throw: never raises. Returns ``{path, n_chars, chapters, note}``; on a
|
||||
fatal error ``path`` is None and ``note`` explains why.
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
from datascience.automatic_eda import build_document, render_md
|
||||
from datascience.automatic_eda.model import as_chapter, as_chapters
|
||||
|
||||
|
||||
def _coerce_chapters(chapters_or_profile, meta: dict) -> list:
|
||||
"""Accept chapters OR an eda profile and return a list of Chapter."""
|
||||
arg = chapters_or_profile
|
||||
if isinstance(arg, (list, tuple)):
|
||||
return as_chapters(list(arg))
|
||||
if isinstance(arg, dict):
|
||||
if "blocks" in arg and "columns" not in arg:
|
||||
ch = as_chapter(arg)
|
||||
return [ch] if ch is not None else []
|
||||
return build_document(arg, (meta or {}).get("ctx"))
|
||||
return []
|
||||
|
||||
|
||||
def render_automatic_eda_markdown(chapters_or_profile, out_path: str,
|
||||
meta: dict = None) -> dict:
|
||||
"""Render an AutomaticEDA document into a single self-contained Markdown file.
|
||||
|
||||
Args:
|
||||
chapters_or_profile: a list of chapters (``Chapter`` dataclasses or
|
||||
dicts) or an ``eda`` TableProfile dict (chapters built via
|
||||
``build_document(profile, meta['ctx'])``).
|
||||
out_path: filesystem path for the ``.md`` (parent dirs are created).
|
||||
meta: optional dict. Recognised keys: ``title``, ``ctx`` (dict with
|
||||
``dataset_name``/``source_origin``/``storage``/``n_rows``/``n_cols``),
|
||||
``generated_at``, ``embed_figures`` (export PNGs beside the .md,
|
||||
default False — off keeps the Markdown self-contained).
|
||||
|
||||
Returns:
|
||||
dict (never raises): ``{path: str|None, n_chars: int,
|
||||
chapters: list[{id, version}], note: str}``. On a fatal error ``path`` is
|
||||
None and ``note`` explains the cause.
|
||||
"""
|
||||
meta = dict(meta or {})
|
||||
chapters = _coerce_chapters(chapters_or_profile, meta)
|
||||
return render_md(chapters, out_path, meta)
|
||||
@@ -0,0 +1,168 @@
|
||||
"""Tests for render_automatic_eda_markdown — DoD: golden + edge + profile path.
|
||||
|
||||
Self-contained synthetic blocks (no DuckDB). Verifies every block kind serializes
|
||||
to Markdown (heading, markdown with glossary+bold, kv/data tables, a figure whose
|
||||
histogram bars become a data table, caption, note, group, glossary entry), that a
|
||||
leading level-1 heading equal to the chapter title is omitted, that an empty
|
||||
document degrades to a valid minimal Markdown without raising, and that passing a
|
||||
minimal TableProfile builds chapters and writes the file.
|
||||
"""
|
||||
|
||||
import os
|
||||
import tempfile
|
||||
|
||||
from datascience.render_automatic_eda_markdown import render_automatic_eda_markdown
|
||||
from datascience.automatic_eda.model import (
|
||||
Caption, Chapter, DataTable, Figure, GlossaryEntry, Group, Heading, KVTable,
|
||||
Markdown, Note,
|
||||
)
|
||||
|
||||
|
||||
def _hist_fig():
|
||||
import matplotlib
|
||||
matplotlib.use("Agg")
|
||||
import matplotlib.pyplot as plt
|
||||
fig, ax = plt.subplots()
|
||||
ax.hist([1, 1, 2, 2, 2, 3, 4, 4, 5, 5, 5, 5], bins=5)
|
||||
return fig
|
||||
|
||||
|
||||
def _chapters() -> list:
|
||||
blocks = [
|
||||
Heading("Demo", 1), # == chapter title -> omitted.
|
||||
Heading("Seccion dos", 2), # -> ####
|
||||
Markdown("Texto con [[term:ent]]entropia[[/term]] y **bold** aqui."),
|
||||
KVTable(rows=[("Filas", 1000), ("Columnas", 5)], title="Resumen"),
|
||||
DataTable(header=["col", "valor"],
|
||||
rows=[["alpha", "111"], ["beta", "222"], ["gamma", "333"]],
|
||||
title="Datos", note="nota inferior"),
|
||||
Figure(make=_hist_fig, caption="Histograma demo"),
|
||||
Caption("pie de figura"),
|
||||
Note("una nota aparte"),
|
||||
Group(title="Grupo X", blocks=[Markdown("dentro del grupo")]),
|
||||
GlossaryEntry(key="ent", label="Entropia",
|
||||
definition="Medida de incertidumbre."),
|
||||
]
|
||||
return [Chapter(id="demo", title="Demo", version="1.0.0", blocks=blocks)]
|
||||
|
||||
|
||||
def _read(path: str) -> str:
|
||||
with open(path, "r", encoding="utf-8") as fh:
|
||||
return fh.read()
|
||||
|
||||
|
||||
def test_golden_bloques_sinteticos_serializa_todo_a_markdown():
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "demo.md")
|
||||
res = render_automatic_eda_markdown(
|
||||
_chapters(), out,
|
||||
{"title": "EDA Demo",
|
||||
"ctx": {"dataset_name": "Demo", "n_rows": 12, "n_cols": 2}})
|
||||
assert res["path"] == out
|
||||
assert os.path.exists(out)
|
||||
assert res["n_chars"] > 0
|
||||
assert res["chapters"] == [{"id": "demo", "version": "1.0.0"}]
|
||||
|
||||
content = _read(out)
|
||||
# Document structure.
|
||||
assert content.startswith("# ")
|
||||
assert "## Índice" in content
|
||||
# A Markdown table is present (header + separator row).
|
||||
assert "| " in content and "| --- " in content
|
||||
# DataTable values are all dumped.
|
||||
for v in ("alpha", "111", "beta", "222", "gamma", "333"):
|
||||
assert v in content
|
||||
# Glossary markers stripped, bold kept.
|
||||
assert "[[term" not in content
|
||||
assert "[[/term]]" not in content
|
||||
assert "**bold**" in content
|
||||
assert "entropia" in content # visible glossary text preserved.
|
||||
# Figure histogram bars became a data table.
|
||||
assert "| Desde | Hasta | Frecuencia |" in content
|
||||
# Glossary entry rendered as a level-3 heading.
|
||||
assert "### Entropia" in content
|
||||
# Level-2 heading -> ####.
|
||||
assert "#### Seccion dos" in content
|
||||
# Leading level-1 heading equal to the title was omitted.
|
||||
assert "### Demo" not in content
|
||||
# Group title rendered.
|
||||
assert "### Grupo X" in content
|
||||
|
||||
|
||||
def _hist_fig_with_span():
|
||||
"""Histogram with a wide ``axvspan`` (±1σ band) over it.
|
||||
|
||||
Reproduces the num_distr figure shape: matplotlib keeps the span as a lone
|
||||
Rectangle in ``ax.patches`` alongside the bin bars; it must NOT leak into the
|
||||
extracted bins table as a fake bin (it is ~5x wider than a bin)."""
|
||||
import matplotlib
|
||||
matplotlib.use("Agg")
|
||||
import matplotlib.pyplot as plt
|
||||
fig, ax = plt.subplots()
|
||||
data = [1, 1, 2, 2, 2, 3, 4, 4, 5, 5, 5, 5]
|
||||
ax.hist(data, bins=5)
|
||||
ax.axvspan(2.0, 4.0, alpha=0.2) # mean±σ band — a wide stray rectangle.
|
||||
return fig
|
||||
|
||||
|
||||
def test_figura_descarta_axvspan_de_la_tabla_de_bins():
|
||||
"""The ±1σ band rectangle must not appear as a row in the bins table."""
|
||||
blocks = [Figure(make=_hist_fig_with_span, caption="Hist con banda")]
|
||||
chapters = [Chapter(id="f", title="Fig", version="1.0.0", blocks=blocks)]
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "fig.md")
|
||||
render_automatic_eda_markdown(chapters, out, {"title": "T"})
|
||||
content = _read(out)
|
||||
assert "| Desde | Hasta | Frecuencia |" in content
|
||||
# Extract the rows of the bins table: lines between the header/separator
|
||||
# and the next blank line.
|
||||
lines = content.splitlines()
|
||||
hi = next(i for i, ln in enumerate(lines)
|
||||
if ln.startswith("| Desde | Hasta | Frecuencia |"))
|
||||
rows = []
|
||||
for ln in lines[hi + 2:]: # skip header + separator
|
||||
if not ln.startswith("|"):
|
||||
break
|
||||
rows.append(ln)
|
||||
# 5 histogram bins, no extra wide span row.
|
||||
assert len(rows) == 5, rows
|
||||
# No row spans a width of ~2.0 (the axvspan from x=2 to x=4).
|
||||
for ln in rows:
|
||||
cells = [c.strip() for c in ln.strip("|").split("|")]
|
||||
lo, hi_v = float(cells[0]), float(cells[1])
|
||||
assert (hi_v - lo) < 1.5, f"wide span leaked: {ln}"
|
||||
|
||||
|
||||
def test_edge_documento_vacio_no_revienta():
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "empty.md")
|
||||
res = render_automatic_eda_markdown([], out, {})
|
||||
assert res["path"] == out
|
||||
assert os.path.exists(out)
|
||||
assert res["chapters"] == []
|
||||
content = _read(out)
|
||||
assert "documento vacío" in content
|
||||
assert content.startswith("# ")
|
||||
|
||||
|
||||
def test_profile_path_construye_capitulos_y_escribe():
|
||||
profile = {
|
||||
"table": "mini",
|
||||
"source": "/data/mini.csv",
|
||||
"n_rows": 10,
|
||||
"n_cols": 1,
|
||||
"quality_score": 88.0,
|
||||
"columns": [
|
||||
{"name": "x", "inferred_type": "numeric", "null_pct": 0.0,
|
||||
"null_count": 0,
|
||||
"numeric": {"mean": 1.0, "median": 1.0, "min": 0.0, "max": 2.0,
|
||||
"std": 0.5}},
|
||||
],
|
||||
}
|
||||
with tempfile.TemporaryDirectory() as d:
|
||||
out = os.path.join(d, "mini.md")
|
||||
res = render_automatic_eda_markdown(
|
||||
profile, out, {"title": "Mini", "ctx": {"dataset_name": "Mini"}})
|
||||
assert res["path"] == out # not None — no exception, file written.
|
||||
assert os.path.exists(out)
|
||||
assert res["n_chars"] > 0
|
||||
@@ -3,7 +3,7 @@ name: summarize_table_duckdb
|
||||
kind: function
|
||||
lang: py
|
||||
domain: datascience
|
||||
version: "1.0.0"
|
||||
version: "1.1.0"
|
||||
purity: impure
|
||||
signature: "def summarize_table_duckdb(db_path: str, table: str, high_card_ratio: float = 0.9) -> dict"
|
||||
description: "Perfila una tabla DuckDB en una sola pasada SQL (SUMMARIZE, push-down sin traer filas a RAM) y devuelve el esqueleto de un TableProfile con el perfil base por columna. Corazon del grupo eda: base barata sobre la que otras funciones anaden lo estadistico fino (skew/kurtosis/histograma sobre muestra)."
|
||||
@@ -64,6 +64,7 @@ else:
|
||||
- **`distinct_count` exacto para tablas <=200k filas, aproximado+capado por encima**: `SUMMARIZE` usa HyperLogLog (`approx_unique`), que SOBREESTIMA y en tablas pequenas puede reportar mas distintos que filas (inflando `unique_pct` por encima de 1.0 y disparando flags `possible_id` falsos). Por eso, para `n_rows <= 200000` la funcion calcula `COUNT(DISTINCT)` EXACTO en una sola query combinada (barata) y usa ese valor. Para tablas mas grandes mantiene `approx_unique` pero lo CAPA a `n_rows` (`distinct_count = min(approx_unique, n_rows)`). En ambos casos `unique_pct = min(distinct_count / n_rows, 1.0)`, asi que `distinct_count` nunca supera las filas ni `unique_pct` pasa de 1.0. Los flags `possible_id` / `high_cardinality` derivan de ese `distinct_count` ya corregido (exacto y fiable por debajo de 200k filas; aproximado y conservador por encima).
|
||||
- **`SUMMARIZE` NO da skew, kurtosis ni histograma**, ni percentiles finos (p1/p5/p95/p99), moda, outliers, correlaciones, key_candidates ni quality_score. Esas claves quedan en `None`/`[]` a proposito: las rellena otra funcion del grupo `eda` sobre una muestra. El sub-dict `numeric` solo trae min, max, mean, std, p25, p50, p75.
|
||||
- **`SUMMARIZE.count` es el total de filas, no el no-nulo**: la funcion deriva el `count` no-nulo del ColumnProfile como `n_rows - null_count` (con `null_count` redondeado de `null_percentage`).
|
||||
- **`duplicate_rows`/`duplicate_pct` se pueblan push-down** (desde v1.1.0) con `count(*)` sobre `SELECT DISTINCT *` (sin traer filas a RAM): `duplicate_rows = n_rows - filas_distintas`, `duplicate_pct` en fraccion 0-1. Habilitan la dimension de unicidad de registro del score de dataset (`profile_table` paso 6). Si la tabla tiene tipos no comparables con `DISTINCT` (BLOB/LIST/MAP) la query degrada y ambas vuelven a `None` (renormaliza el score a solo `cell_quality`).
|
||||
- **min/max/avg/std/q25/q50/q75 vienen como strings** desde DuckDB; se convierten a float (None si la columna no es numerica).
|
||||
- **Requiere DuckDB 1.5.2** (columnas de `SUMMARIZE` validadas con esa version: column_name, column_type, min, max, approx_unique, avg, std, q25, q50, q75, count, null_percentage).
|
||||
- **El identificador de tabla se interpola** (no parametrizable en `SUMMARIZE`): por eso se valida contra `^[A-Za-z_][A-Za-z0-9_]*$` antes de citarlo. Un nombre invalido (p.ej. con `;` o espacios) devuelve `{status:'error'}` sin tocar la base.
|
||||
|
||||
@@ -196,6 +196,21 @@ def summarize_table_duckdb(
|
||||
sum(c["null_pct"] for c in columns) / len(columns) if columns else 0.0
|
||||
)
|
||||
|
||||
# Unicidad de registro: filas duplicadas via COUNT de filas distintas
|
||||
# push-down (DISTINCT *), sin traer filas a RAM. Habilita la dimension
|
||||
# de uniqueness del score de dataset (1 - duplicate_pct). Degrada a None
|
||||
# si la tabla tiene tipos no comparables con DISTINCT (BLOB/LIST/MAP).
|
||||
duplicate_rows = None
|
||||
duplicate_pct = None
|
||||
if n_rows > 0:
|
||||
dup_res = duckdb_query_readonly(
|
||||
db_path, f"SELECT count(*) AS c FROM (SELECT DISTINCT * FROM {quoted})"
|
||||
)
|
||||
if dup_res["status"] == "ok" and dup_res["rows"]:
|
||||
distinct_rows = int(dup_res["rows"][0]["c"])
|
||||
duplicate_rows = max(0, n_rows - distinct_rows)
|
||||
duplicate_pct = duplicate_rows / n_rows # fraccion 0-1
|
||||
|
||||
profile = {
|
||||
"table": table,
|
||||
"source": "duckdb",
|
||||
@@ -203,8 +218,8 @@ def summarize_table_duckdb(
|
||||
"n_rows": n_rows,
|
||||
"n_cols": len(columns),
|
||||
"size_bytes": None,
|
||||
"duplicate_rows": None,
|
||||
"duplicate_pct": None,
|
||||
"duplicate_rows": duplicate_rows,
|
||||
"duplicate_pct": duplicate_pct,
|
||||
"constant_cols": constant_cols,
|
||||
"all_null_cols": all_null_cols,
|
||||
"null_cell_pct": null_cell_pct,
|
||||
|
||||
@@ -54,6 +54,30 @@ def test_shape_y_metadatos_tabla(db):
|
||||
assert profile["correlations"] is None
|
||||
|
||||
|
||||
def test_duplicate_pct_sin_duplicados(db):
|
||||
"""Tabla con todas las filas distintas: duplicate_pct = 0, no None."""
|
||||
profile = summarize_table_duckdb(db, "ventas")["profile"]
|
||||
assert profile["duplicate_rows"] == 0
|
||||
assert profile["duplicate_pct"] == 0.0
|
||||
|
||||
|
||||
def test_duplicate_pct_con_duplicados(tmp_path):
|
||||
"""Filas repetidas: duplicate_rows/duplicate_pct se pueblan push-down."""
|
||||
path = str(tmp_path / "dups.duckdb")
|
||||
con = duckdb.connect(path)
|
||||
con.execute("CREATE TABLE t (a INTEGER, b VARCHAR)")
|
||||
# 5 filas, 2 de ellas idénticas a otras -> 2 duplicadas sobre 5 = 0.4.
|
||||
con.execute(
|
||||
"INSERT INTO t VALUES "
|
||||
"(1,'x'), (2,'y'), (1,'x'), (3,'z'), (2,'y')"
|
||||
)
|
||||
con.close()
|
||||
profile = summarize_table_duckdb(path, "t")["profile"]
|
||||
assert profile["n_rows"] == 5
|
||||
assert profile["duplicate_rows"] == 2
|
||||
assert profile["duplicate_pct"] == 0.4
|
||||
|
||||
|
||||
def test_column_profile_shape(db):
|
||||
profile = summarize_table_duckdb(db, "ventas")["profile"]
|
||||
by_name = {c["name"]: c for c in profile["columns"]}
|
||||
|
||||
@@ -4,7 +4,7 @@ kind: pipeline
|
||||
lang: py
|
||||
domain: pipelines
|
||||
purity: impure
|
||||
version: "1.0.0"
|
||||
version: "1.1.0"
|
||||
signature: "def profile_table(db_path: str, table: str, backend: str = \"duckdb\", sample: int = 5000, run_models: bool = False, run_llm: bool = False, run_series: bool = False, emit_pdf: bool = False, emit_automatic: bool = False, report_dir: str = \"reports\", write_report: bool = True) -> dict"
|
||||
description: "Orquestador one-shot del grupo de capacidad eda: perfila UNA tabla (DuckDB o PostgreSQL) end-to-end componiendo las funciones del grupo (perfil base SQL + muestreo read-only + inferencia semantica + promocion de tipo + estadistica numerica/categorica + score de calidad + correlaciones con correccion FDR + re-expresion de Tukey + avisos exploratorios) y, opcional, modelos baratos (run_models), interpretacion LLM (run_llm) y analisis de serie temporal por columna (run_series: estacionariedad ADF+KPSS, ACF/PACF, STL, retornos). Emite el TableProfile completo mas (opcional) report markdown + JSON sidecar + PDF movil (emit_pdf). Es la composicion canonica para hazme un EDA de esta tabla."
|
||||
tags: [eda, duckdb, postgres, profiling, data-quality, pipeline, dataops, timeseries]
|
||||
@@ -114,3 +114,12 @@ para auditar la calidad de una tabla ya productiva. Reemplaza orquestar a mano
|
||||
Formatos exoticos pueden descartarse silenciosamente del calculo numerico.
|
||||
- `db_path` debe existir: DuckDB read-only NO crea la base. El muestreo usa el
|
||||
sandbox por defecto de `duckdb_query_readonly` (sin acceso a FS/red).
|
||||
- **Score de calidad (report 2046, desde v1.1.0).** Paso 5: cada columna recibe
|
||||
`quality_score` de `column_quality_score` con la formula 60/40
|
||||
(completeness/validity); al promocionar texto a numero/fecha se expone
|
||||
`col["validity_rate"]` (parse rate de la muestra) para alimentar la dimension
|
||||
validity. Paso 6: el score de dataset NO es la media simple — es
|
||||
`100 * (0.85*cell_quality + 0.15*row_uniqueness)`, donde
|
||||
`cell_quality = media(score_col/100)` y `row_uniqueness = 1 - duplicate_pct`.
|
||||
Si `duplicate_pct` es `None` (backend sin calcularlo) el score se renormaliza
|
||||
a solo `cell_quality`. Los outliers NO bajan el score (van a `observations`).
|
||||
|
||||
@@ -477,9 +477,18 @@ def profile_table(
|
||||
if vals and (len(ok) / len(vals)) >= _PROMOTE_MIN_PARSE:
|
||||
col["inferred_type"] = "numeric"
|
||||
inferred = "numeric"
|
||||
# Tasa de parseo real de la muestra: alimenta la
|
||||
# dimension validity de column_quality_score (fraccion
|
||||
# de valores conformes al tipo numerico promovido).
|
||||
col["validity_rate"] = len(ok) / len(vals)
|
||||
elif semantic in _DATETIME_SEMANTIC:
|
||||
col["inferred_type"] = "datetime"
|
||||
inferred = "datetime"
|
||||
# Tasa de parseo de la muestra a fecha (mismo papel que el
|
||||
# parse rate numerico) para la dimension validity.
|
||||
parsed_dt = [_to_ordinal_days(v) for v in vals]
|
||||
ok_dt = [d for d in parsed_dt if d is not None]
|
||||
col["validity_rate"] = (len(ok_dt) / len(vals)) if vals else None
|
||||
|
||||
# 4) Enriquecer segun el inferred_type final.
|
||||
if inferred == "numeric":
|
||||
@@ -506,11 +515,36 @@ def profile_table(
|
||||
# 5) Score de calidad por columna.
|
||||
col["quality_score"] = column_quality_score(col).get("score")
|
||||
|
||||
# 6) Score agregado de la tabla (media de columnas).
|
||||
# 6) Score agregado de la tabla (report 2046): NO media simple.
|
||||
# cell_quality = media de los scores de columna, en [0,1].
|
||||
# row_uniqueness = 1 - duplicate_pct (unicidad de registro).
|
||||
# score = 100 * (0.85*cell_quality + 0.15*row_uniqueness).
|
||||
# Renormaliza a solo cell_quality si duplicate_pct no se pudo calcular.
|
||||
scores = [
|
||||
c["quality_score"] for c in cols if c.get("quality_score") is not None
|
||||
]
|
||||
prof["quality_score"] = round(sum(scores) / len(scores), 1) if scores else None
|
||||
if scores:
|
||||
cell_quality = (sum(scores) / len(scores)) / 100.0
|
||||
dup_pct = prof.get("duplicate_pct")
|
||||
if dup_pct is not None:
|
||||
try:
|
||||
d = float(dup_pct)
|
||||
except (TypeError, ValueError):
|
||||
d = None
|
||||
else:
|
||||
d = None
|
||||
if d is not None:
|
||||
# Tolerar escala 0-100 por si algun backend la entrega asi.
|
||||
if d > 1.0:
|
||||
d = d / 100.0
|
||||
row_uniqueness = max(0.0, min(1.0, 1.0 - d))
|
||||
prof["quality_score"] = round(
|
||||
100.0 * (0.85 * cell_quality + 0.15 * row_uniqueness), 1
|
||||
)
|
||||
else:
|
||||
prof["quality_score"] = round(100.0 * cell_quality, 1)
|
||||
else:
|
||||
prof["quality_score"] = None
|
||||
|
||||
# 7) Candidatos a clave.
|
||||
key_candidates = []
|
||||
@@ -536,6 +570,21 @@ def profile_table(
|
||||
type_breakdown[it] += 1
|
||||
prof["type_breakdown"] = type_breakdown
|
||||
|
||||
# 8.1) Primeras filas crudas (df.head) para el capitulo OVERVIEW del motor
|
||||
# AutomaticEDA: una muestra SELECT col1,col2,... LIMIT 10 alineada por fila.
|
||||
# Se reusa _sample_rows (mismo lector read-only). Estilo dict-no-throw: si
|
||||
# falla, head_rows queda None y el capitulo degrada a su nota honesta. El
|
||||
# capitulo lo recoge via profile["head_rows"]; build_eda_render_ctx ademas
|
||||
# lo replica en ctx["head_rows"] cuando se construye el contexto de render.
|
||||
try:
|
||||
head_names = [c.get("name") for c in cols if c.get("name")]
|
||||
head_rows = _sample_rows(_q, table, head_names, 10)
|
||||
prof["head_rows"] = [
|
||||
dict(r) for r in head_rows if isinstance(r, dict)
|
||||
] or None
|
||||
except Exception: # noqa: BLE001
|
||||
prof["head_rows"] = None
|
||||
|
||||
# 8.5) Matriz de correlacion/asociacion sobre una muestra de filas
|
||||
# alineadas. Elige la metrica por par de tipos (Pearson/Spearman,
|
||||
# Cramer's V/Theil's U, correlation ratio, MI) via association_matrix.
|
||||
|
||||
@@ -4,9 +4,9 @@ kind: pipeline
|
||||
lang: py
|
||||
domain: pipelines
|
||||
purity: impure
|
||||
version: "1.0.0"
|
||||
signature: "def render_automatic_eda(db_path: str, table: str, backend: str = \"duckdb\", sample: int = 5000, run_models: bool = True, run_series: bool = True, run_llm: bool = False, out_dir: str = \"reports\", basename: str = None, ctx_extra: dict = None) -> dict"
|
||||
description: "Informe AutomaticEDA COMPLETO one-shot de una tabla DuckDB/PostgreSQL: perfila con profile_table, construye el ctx con los datos crudos (build_eda_render_ctx: raw_numeric para modelos/geo, timeseries_raw para series, geo_points para el mapa, db_path/table para la agregacion push-down) y emite PDF (A5 movil) Y PPTX (16:9) del mismo documento por capitulos, con los 11 capitulos POBLADOS de verdad (clusters pintados sobre el PCA, evolucion temporal, mapa geografico y tablas de agregacion), no degradados. Devuelve las rutas de PDF/PPTX y el manifiesto de versiones por capitulo."
|
||||
version: "1.1.0"
|
||||
signature: "def render_automatic_eda(db_path: str, table: str, backend: str = \"duckdb\", sample: int = None, run_models: bool = None, run_series: bool = None, run_llm: bool = None, profile_level: str = \"standard\", out_dir: str = \"reports\", basename: str = None, ctx_extra: dict = None) -> dict"
|
||||
description: "Informe AutomaticEDA COMPLETO one-shot de una tabla DuckDB/PostgreSQL: perfila con profile_table, construye el ctx con los datos crudos (build_eda_render_ctx: raw_numeric para modelos/geo, timeseries_raw para series, geo_points para el mapa, db_path/table para la agregacion push-down) y emite PDF (A5 movil) Y PPTX (16:9) del mismo documento por capitulos, con los 11 capitulos POBLADOS de verdad (clusters pintados sobre el PCA, evolucion temporal, mapa geografico y tablas de agregacion), no degradados. El parametro profile_level es un preset de consumo CPU/LLM (lite/standard/full) que mapea a los flags run_models/run_series/run_llm/sample; un flag explicito siempre prima sobre el preset. lite=bajo consumo (sin LLM, sin serie, modelos solo PCA+normalidad sin KMeans/IsolationForest, sample reducido); standard=comportamiento historico; full=standard+narrativa LLM. Devuelve las rutas de PDF/PPTX y el manifiesto de versiones por capitulo."
|
||||
tags: [eda, duckdb, postgres, profiling, pipeline, dataops, report, pdf, pptx]
|
||||
uses_functions:
|
||||
- profile_table_py_pipelines
|
||||
@@ -31,13 +31,15 @@ params:
|
||||
- name: backend
|
||||
desc: "'duckdb' (default) o 'postgres'. Selecciona el motor de perfilado y muestreo."
|
||||
- name: sample
|
||||
desc: "Maximo de filas/valores muestreados por columna para el perfil y para los datos crudos del ctx (LIMIT). Default 5000."
|
||||
desc: "Maximo de filas/valores muestreados por columna para el perfil y para los datos crudos del ctx (LIMIT). Default None => lo fija el preset de profile_level (lite=2000, standard/full=5000). Un valor explicito prima sobre el preset."
|
||||
- name: run_models
|
||||
desc: "Si True (default) corre los modelos baratos (PCA/KMeans/IsolationForest/normalidad); necesario para que el capitulo modelos pinte los clusters sobre el plano PCA."
|
||||
desc: "Corre los modelos baratos (PCA/KMeans/IsolationForest/normalidad); necesario para que el capitulo modelos pinte los clusters sobre el plano PCA. Default None => lo fija el preset (True en los tres niveles); en lite los modelos se limitan a PCA+normalidad. Un valor explicito prima sobre el preset."
|
||||
- name: run_series
|
||||
desc: "Si True (default) calcula el analisis de serie temporal por columna numerica; necesario para el analisis del capitulo timeseries (la grafica de evolucion sale de los datos crudos del ctx aunque sea False)."
|
||||
desc: "Calcula el analisis de serie temporal por columna numerica; necesario para el analisis del capitulo timeseries. Default None => lo fija el preset (standard/full=True, lite=False). Un valor explicito prima sobre el preset."
|
||||
- name: run_llm
|
||||
desc: "Si True (default False) hace la interpretacion LLM del perfil y ACTIVA la narrativa LLM de los capitulos modelos/geospatial/agregacion (titulos de segmento, descripcion de zona, seleccion de agregaciones). Con False usan su derivacion cuantitativa sin red."
|
||||
desc: "Hace la interpretacion LLM del perfil y ACTIVA la narrativa LLM de los capitulos modelos/geospatial/agregacion (titulos de segmento, descripcion de zona, seleccion de agregaciones). Con False usan su derivacion cuantitativa sin red. Default None => lo fija el preset (full=True, lite/standard=False). Un valor explicito prima sobre el preset."
|
||||
- name: profile_level
|
||||
desc: "Preset de consumo CPU/LLM (default 'standard'). Mapea a defaults de run_models/run_series/run_llm/sample; un flag explicito SIEMPRE prima. 'lite'=bajo consumo (run_llm=False, run_series=False, sample=2000, modelos solo PCA+normalidad sin KMeans/IsolationForest); 'standard'=comportamiento historico (modelos completos, serie, sin LLM); 'full'=standard+narrativa LLM. Un nivel desconocido cae a 'standard'."
|
||||
- name: out_dir
|
||||
desc: "Directorio de salida (se crea si no existe). Default 'reports'."
|
||||
- name: basename
|
||||
@@ -52,14 +54,21 @@ output: "dict {status:'ok', pdf_path:str, pptx_path:str, manifest_path:str|None,
|
||||
```python
|
||||
from pipelines.render_automatic_eda import render_automatic_eda
|
||||
|
||||
# Tabla DuckDB con categoricas + fecha + numericas: informe completo a reports/.
|
||||
r = render_automatic_eda("/tmp/ventas.duckdb", "ventas",
|
||||
run_models=True, run_series=True, out_dir="reports")
|
||||
# Informe completo a reports/ (standard = comportamiento por defecto historico).
|
||||
r = render_automatic_eda("/tmp/ventas.duckdb", "ventas", out_dir="reports")
|
||||
print(r["status"], r["pdf_path"], r["pptx_path"], r["n_pages"], r["n_slides"])
|
||||
# ok reports/aeda_ventas_20260630-120500.pdf reports/aeda_ventas_20260630-120500.pptx 14 16
|
||||
# ok reports/aeda_ventas_20260630-120500.pdf reports/aeda_ventas_20260630-120500.pptx 37 39
|
||||
|
||||
# Con narrativa LLM (titulos de segmento, descripcion geografica, etc.):
|
||||
r = render_automatic_eda("/tmp/ventas.duckdb", "ventas", run_llm=True)
|
||||
# Bajo consumo (CPU/LLM): vistazo rapido y barato — sin LLM, sin serie, modelos
|
||||
# solo PCA + normalidad (sin KMeans/IsolationForest), sample reducido.
|
||||
r = render_automatic_eda("/tmp/ventas.duckdb", "ventas", profile_level="lite")
|
||||
|
||||
# Maximo: standard + narrativa LLM por capitulo (titulos de segmento, etc.).
|
||||
r = render_automatic_eda("/tmp/ventas.duckdb", "ventas", profile_level="full")
|
||||
|
||||
# Precedencia: el flag explicito SIEMPRE prima sobre el preset. lite pero con LLM:
|
||||
r = render_automatic_eda("/tmp/ventas.duckdb", "ventas",
|
||||
profile_level="lite", run_llm=True) # el LLM SI se ejecuta
|
||||
```
|
||||
|
||||
## Cuando usarla
|
||||
@@ -72,20 +81,41 @@ llama a los dos renderers": este pipeline orquesta `profile_table` ->
|
||||
entregable para compartir un EDA, o como el motor detras de `profile_table(
|
||||
emit_automatic=True)` y del skill `/eda`.
|
||||
|
||||
Para un EDA **barato/rapido** (CI, vistazo previo, maquina sin GPU o sin red) usa
|
||||
`profile_level="lite"`: evita KMeans + IsolationForest (lo caro en CPU), la serie
|
||||
temporal y el LLM. Para el **maximo** con interpretacion narrativa por capitulo,
|
||||
`profile_level="full"`. El default `"standard"` mantiene el comportamiento previo.
|
||||
|
||||
## Gotchas
|
||||
|
||||
- Impura: ESCRIBE el PDF, el PPTX y `automatic_eda_manifest.json` en `out_dir`.
|
||||
- `db_path` debe existir: DuckDB read-only no crea la base.
|
||||
- `run_models=True` y `run_series=True` por defecto encarecen el perfil (PCA/
|
||||
KMeans/IsolationForest + ADF/KPSS/STL por columna). Para un informe mas barato
|
||||
ponlos a False: los capitulos modelos/timeseries se omiten o se reducen, pero
|
||||
el resto del informe sale igual.
|
||||
- `run_llm=True` hace llamadas de red (interpretacion del perfil + narrativa por
|
||||
capitulo). Sin red, dejalo en False: los capitulos siguen completos con su
|
||||
derivacion cuantitativa (titulos de segmento derivados, nota geografica
|
||||
derivada, seleccion de agregaciones cuantitativa).
|
||||
- **Precedencia de flags vs preset**: `profile_level` solo fija los DEFAULTS de
|
||||
`run_models`/`run_series`/`run_llm`/`sample` (los que quedan en None). Cualquiera
|
||||
de esos flags pasado explicito gana al preset. Ej: `profile_level="lite",
|
||||
run_llm=True` ejecuta el LLM pese a que lite lo apaga por defecto.
|
||||
- **lite y la seleccion de features de modelo**: en lite los modelos (PCA +
|
||||
normalidad) corren sobre la muestra numerica cruda (`ctx['raw_numeric']`), sin la
|
||||
poda fina de features que aplica el modo standard (que excluye ids enteros y
|
||||
columnas de baja cardinalidad antes de PCA/KMeans). Es el coste de mantener el
|
||||
cableado minimo y barato; para el analisis fino de modelos usa standard/full.
|
||||
- `profile_level="standard"`/`"full"` corren PCA/KMeans/IsolationForest +
|
||||
ADF/KPSS/STL por columna (caro). Para un informe mas barato usa `"lite"` (o pon
|
||||
los flags a False a mano): los capitulos modelos/timeseries se reducen pero el
|
||||
resto del informe sale igual.
|
||||
- `run_llm=True` (preset full o flag explicito) hace llamadas de red
|
||||
(interpretacion del perfil + narrativa por capitulo). Sin red, usa lite/standard:
|
||||
los capitulos siguen completos con su derivacion cuantitativa.
|
||||
- El PPTX requiere `python-pptx`; si no esta instalado, `pptx_path` sera None y
|
||||
`pptx_note` lo explica (el PDF se emite igual).
|
||||
- Los datos crudos del ctx se muestrean con `sample` (LIMIT), no se trae la tabla
|
||||
entera a RAM; con tablas enormes sube `sample` si quieres mas representatividad
|
||||
(coste: mas memoria).
|
||||
|
||||
## Capability growth log
|
||||
|
||||
- v1.1.0 (2026-06-30) — anade el parametro `profile_level` (lite/standard/full),
|
||||
preset de consumo CPU/LLM que mapea a los flags run_models/run_series/run_llm/
|
||||
sample. lite limita los modelos a PCA+normalidad (cableado a run_eda_models con
|
||||
run_kmeans=False/run_isolation=False) y apaga LLM/serie. Cambio aditivo y
|
||||
retro-compatible: sin profile_level el comportamiento es identico al de v1.0.0.
|
||||
|
||||
@@ -1,9 +1,10 @@
|
||||
"""render_automatic_eda — EDA completo one-shot: perfil → ctx → PDF + PPTX.
|
||||
"""render_automatic_eda — EDA completo one-shot: perfil → ctx → PDF + PPTX + MD.
|
||||
|
||||
Pipeline impuro del grupo de capacidad `eda`. Dada UNA tabla DuckDB (o
|
||||
PostgreSQL), produce el informe AutomaticEDA COMPLETO en sus dos formatos a la
|
||||
vez (PDF móvil A5 + PPTX 16:9) con los 11 capítulos POBLADOS, en una sola
|
||||
llamada. Compone, sin reimplementar su lógica, cuatro funciones del registry:
|
||||
PostgreSQL), produce el informe AutomaticEDA COMPLETO en sus tres formatos a la
|
||||
vez (PDF móvil A5 + PPTX 16:9 + Markdown autocontenido para pegar a un LLM) con
|
||||
los capítulos POBLADOS, en una sola llamada. Compone, sin reimplementar su
|
||||
lógica, varias funciones del registry:
|
||||
|
||||
- profile_table : perfila la tabla end-to-end (TableProfile agregado),
|
||||
opcionalmente con modelos baratos y análisis de serie.
|
||||
@@ -12,8 +13,11 @@ llamada. Compone, sin reimplementar su lógica, cuatro funciones del registry:
|
||||
modelos/geo, timeseries_raw para series, geo_points
|
||||
para el mapa, db_path/table para la agregación
|
||||
push-down). Sin él, esos capítulos degradan.
|
||||
- render_automatic_eda_pdf : renderiza el documento por capítulos a PDF.
|
||||
- render_automatic_eda_pptx : renderiza el mismo documento a PPTX.
|
||||
- render_automatic_eda_pdf : renderiza el documento por capítulos a PDF.
|
||||
- render_automatic_eda_pptx : renderiza el mismo documento a PPTX.
|
||||
- render_automatic_eda_markdown : serializa el mismo documento a Markdown
|
||||
autocontenido (texto + tablas markdown, sin
|
||||
binarios) para incorporar a un LLM.
|
||||
|
||||
El TableProfile agregado basta para portada/overview/distribuciones/calidad/
|
||||
correlación, pero los capítulos `modelos`, `timeseries`, `geospatial` y
|
||||
@@ -32,26 +36,69 @@ from datetime import datetime, timezone
|
||||
|
||||
from datascience import (
|
||||
build_eda_render_ctx,
|
||||
render_automatic_eda_markdown,
|
||||
render_automatic_eda_pdf,
|
||||
render_automatic_eda_pptx,
|
||||
run_eda_models,
|
||||
)
|
||||
from pipelines.profile_table import profile_table
|
||||
|
||||
# Tokens de almacenamiento por backend (para la portada del informe).
|
||||
_STORAGE = {"duckdb": "DuckDB", "postgres": "PostgreSQL"}
|
||||
|
||||
# Presets de consumo CPU/LLM: cada profile_level fija SOLO los DEFAULTS de los
|
||||
# flags que controlan el coste (un flag explícito del caller siempre prima sobre
|
||||
# el preset). model_opts != None marca el camino "modelos baratos" (lite): los
|
||||
# modelos NO los corre profile_table (que ejecutaría KMeans + IsolationForest),
|
||||
# sino run_eda_models con esa granularidad, de modo que el coste CPU de los
|
||||
# multivariantes nunca se paga. model_opts None => modelos completos como hasta
|
||||
# ahora (profile_table los corre con todos los algoritmos).
|
||||
_PROFILE_PRESETS = {
|
||||
# Bajo consumo: sin LLM, sin serie, sample reducido y modelos limitados a
|
||||
# PCA + normalidad (sin KMeans ni IsolationForest, lo caro en CPU). Vistazo
|
||||
# rápido y barato de una tabla.
|
||||
"lite": {
|
||||
"run_models": True,
|
||||
"run_series": False,
|
||||
"run_llm": False,
|
||||
"sample": 2000,
|
||||
"model_opts": {"run_kmeans": False, "run_isolation": False},
|
||||
},
|
||||
# Default: idéntico al comportamiento histórico del pipeline (modelos
|
||||
# completos, serie temporal, sin LLM, sample 5000).
|
||||
"standard": {
|
||||
"run_models": True,
|
||||
"run_series": True,
|
||||
"run_llm": False,
|
||||
"sample": 5000,
|
||||
"model_opts": None,
|
||||
},
|
||||
# Máximo: standard + narrativa LLM (interpretación del perfil y de los
|
||||
# capítulos modelos/geospatial/agregacion). Es la única parte que gasta
|
||||
# tokens del modelo.
|
||||
"full": {
|
||||
"run_models": True,
|
||||
"run_series": True,
|
||||
"run_llm": True,
|
||||
"sample": 5000,
|
||||
"model_opts": None,
|
||||
},
|
||||
}
|
||||
|
||||
|
||||
def render_automatic_eda(
|
||||
db_path: str,
|
||||
table: str,
|
||||
backend: str = "duckdb",
|
||||
sample: int = 5000,
|
||||
run_models: bool = True,
|
||||
run_series: bool = True,
|
||||
run_llm: bool = False,
|
||||
sample: int = None,
|
||||
run_models: bool = None,
|
||||
run_series: bool = None,
|
||||
run_llm: bool = None,
|
||||
profile_level: str = "standard",
|
||||
out_dir: str = "reports",
|
||||
basename: str = None,
|
||||
ctx_extra: dict = None,
|
||||
emit_md: bool = True,
|
||||
) -> dict:
|
||||
"""Perfila una tabla y emite el informe AutomaticEDA completo (PDF + PPTX).
|
||||
|
||||
@@ -60,36 +107,80 @@ def render_automatic_eda(
|
||||
table: nombre de la tabla a perfilar.
|
||||
backend: "duckdb" (default) o "postgres".
|
||||
sample: máximo de filas/valores muestreados por columna para el perfil
|
||||
y para los datos crudos del ctx (LIMIT). Default 5000.
|
||||
run_models: si True (default) corre los modelos baratos
|
||||
y para los datos crudos del ctx (LIMIT). Default None => lo fija el
|
||||
preset de profile_level (lite=2000, standard/full=5000).
|
||||
run_models: corre los modelos baratos
|
||||
(PCA/KMeans/IsolationForest/normalidad). Necesario para que el
|
||||
capítulo `modelos` pinte los clusters sobre el plano PCA.
|
||||
run_series: si True (default) calcula el análisis de serie temporal por
|
||||
capítulo `modelos` pinte los clusters sobre el plano PCA. Default
|
||||
None => lo fija el preset (True en los tres niveles); en `lite` los
|
||||
modelos se limitan a PCA + normalidad (ver profile_level).
|
||||
run_series: calcula el análisis de serie temporal por
|
||||
columna numérica. Necesario para el análisis del capítulo
|
||||
`timeseries` (la gráfica de evolución sale de los datos crudos del
|
||||
ctx aunque run_series sea False).
|
||||
run_llm: si True (default False) hace la interpretación LLM del perfil y
|
||||
ctx aunque run_series sea False). Default None => lo fija el preset
|
||||
(standard/full=True, lite=False).
|
||||
run_llm: hace la interpretación LLM del perfil y
|
||||
ACTIVA además la narrativa LLM de los capítulos modelos/geospatial/
|
||||
agregacion (títulos de segmento, descripción de la zona, selección de
|
||||
agregaciones). Con False esos capítulos usan su derivación
|
||||
cuantitativa (siguen completos, sin llamadas de red).
|
||||
cuantitativa (siguen completos, sin llamadas de red). Default None =>
|
||||
lo fija el preset (full=True, lite/standard=False).
|
||||
profile_level: preset de consumo CPU/LLM. Mapea a defaults de los flags
|
||||
anteriores; un flag explícito SIEMPRE prima sobre el preset (el
|
||||
preset solo fija el default cuando el flag se deja en None):
|
||||
|
||||
- "lite" bajo consumo: run_llm=False, run_series=False,
|
||||
sample=2000 y modelos limitados a **PCA + normalidad** (SIN KMeans
|
||||
ni IsolationForest, que es lo caro en CPU). Pensado para un vistazo
|
||||
rápido y barato. El capítulo `modelos` sale con PCA + normalidad,
|
||||
sin el scatter de clusters.
|
||||
- "standard" (default): comportamiento histórico — modelos completos
|
||||
(PCA/KMeans/IsolationForest/normalidad), serie temporal, sin LLM.
|
||||
- "full" standard + narrativa LLM (run_llm=True).
|
||||
|
||||
Ejemplo de precedencia: profile_level="lite" con run_llm=True
|
||||
explícito => el LLM SÍ se ejecuta (el flag explícito gana al preset).
|
||||
out_dir: directorio de salida (se crea si no existe). Default "reports".
|
||||
basename: nombre base de los archivos sin extensión. Default
|
||||
"aeda_<table>_<timestamp>".
|
||||
ctx_extra: dict opcional con claves de presentación/contexto extra que se
|
||||
mezclan en el ctx (p.ej. dataset_name, description, source_origin).
|
||||
No pisan las claves de datos calculadas por build_eda_render_ctx.
|
||||
emit_md: además del PDF y el PPTX, emite un Markdown autocontenido del
|
||||
MISMO documento por capítulos (texto plano + tablas markdown, sin
|
||||
binarios), pensado para pegar a un LLM. Default True. La ruta sale en
|
||||
la clave de retorno ``aeda_md_path``. No altera las demás salidas.
|
||||
|
||||
Returns:
|
||||
dict (nunca lanza). En éxito::
|
||||
|
||||
{"status": "ok", "pdf_path": str, "pptx_path": str,
|
||||
"manifest_path": str|None, "n_pages": int, "n_slides": int,
|
||||
"pdf_note": str, "pptx_note": str, "profile": <TableProfile>}
|
||||
"aeda_md_path": str|None, "manifest_path": str|None,
|
||||
"n_pages": int, "n_slides": int, "md_chars": int|None,
|
||||
"pdf_note": str, "pptx_note": str, "md_note": str|None,
|
||||
"profile": <TableProfile>}
|
||||
|
||||
En error: {"status": "error", "error": str}.
|
||||
"""
|
||||
try:
|
||||
# 0) Resolución del preset: el profile_level fija los DEFAULTS de los
|
||||
# flags de coste; cualquier flag que el caller haya pasado explícito
|
||||
# (!= None) prima sobre el preset. Un profile_level desconocido cae a
|
||||
# "standard" (comportamiento histórico), sin lanzar.
|
||||
preset = _PROFILE_PRESETS.get(profile_level, _PROFILE_PRESETS["standard"])
|
||||
sample = preset["sample"] if sample is None else sample
|
||||
run_models = preset["run_models"] if run_models is None else run_models
|
||||
run_series = preset["run_series"] if run_series is None else run_series
|
||||
run_llm = preset["run_llm"] if run_llm is None else run_llm
|
||||
model_opts = preset["model_opts"]
|
||||
|
||||
# En el camino "modelos baratos" (lite) profile_table NO corre los
|
||||
# modelos: los ejecuta este pipeline con run_eda_models y la granularidad
|
||||
# del preset, evitando pagar el coste CPU de KMeans + IsolationForest.
|
||||
# En standard/full profile_table los corre completos como siempre.
|
||||
lite_models = bool(run_models) and model_opts is not None
|
||||
pt_run_models = bool(run_models) and not lite_models
|
||||
|
||||
# 1) Perfil base + modelos/serie opcionales. No escribe report propio
|
||||
# (write_report=False): este pipeline emite su propio par PDF/PPTX.
|
||||
pres = profile_table(
|
||||
@@ -97,7 +188,7 @@ def render_automatic_eda(
|
||||
table,
|
||||
backend=backend,
|
||||
sample=sample,
|
||||
run_models=run_models,
|
||||
run_models=pt_run_models,
|
||||
run_llm=run_llm,
|
||||
run_series=run_series,
|
||||
emit_pdf=False,
|
||||
@@ -131,6 +222,28 @@ def render_automatic_eda(
|
||||
base_ctx=base_ctx,
|
||||
)
|
||||
|
||||
# 2.5) Camino lite — modelos baratos (PCA + normalidad, sin KMeans ni
|
||||
# IsolationForest). profile_table no corrió los modelos; aquí se corren
|
||||
# con run_eda_models reusando la muestra numérica alineada por fila que
|
||||
# build_eda_render_ctx ya trajo en ctx['raw_numeric'] (no se reimplementa
|
||||
# la lógica de los modelos: se delega en run_eda_models con la
|
||||
# granularidad del preset).
|
||||
if lite_models:
|
||||
raw_numeric = ctx.get("raw_numeric") if isinstance(ctx, dict) else None
|
||||
if isinstance(raw_numeric, dict) and raw_numeric:
|
||||
model_input = {
|
||||
col: {"values": vals, "type": "numeric"}
|
||||
for col, vals in raw_numeric.items()
|
||||
}
|
||||
prof["models"] = run_eda_models(model_input, **model_opts)
|
||||
# Quita raw_numeric del ctx para que el capítulo `modelos` NO
|
||||
# reproyecte clusters KMeans en vivo (project_clusters_2d ejecuta
|
||||
# KMeans): en lite ese coste se evita. geo_points ya quedó derivado
|
||||
# en ctx por build_eda_render_ctx, así que el capítulo geospatial no
|
||||
# se ve afectado.
|
||||
if isinstance(ctx, dict):
|
||||
ctx.pop("raw_numeric", None)
|
||||
|
||||
# 3) Render a ambos formatos desde el MISMO documento por capítulos.
|
||||
os.makedirs(out_dir, exist_ok=True)
|
||||
ts = datetime.now(timezone.utc).strftime("%Y%m%d-%H%M%S")
|
||||
@@ -142,15 +255,34 @@ def render_automatic_eda(
|
||||
rpdf = render_automatic_eda_pdf(prof, pdf_path, meta) or {}
|
||||
rpptx = render_automatic_eda_pptx(prof, pptx_path, meta) or {}
|
||||
|
||||
# Salida Markdown autocontenida (mismo documento por capítulos) para
|
||||
# pegar a un LLM. Aditiva: no afecta a PDF/PPTX/manifest. dict-no-throw.
|
||||
rmd = {}
|
||||
md_path = None
|
||||
if emit_md:
|
||||
md_path = os.path.join(out_dir, base + ".md")
|
||||
# El Markdown es la salida MÁS completa: además del documento por
|
||||
# capítulos (compartido con PDF/PPTX) volca un apéndice con TODOS los
|
||||
# datos numéricos del perfil (matriz de asociación completa, describe
|
||||
# con skew/kurtosis/percentiles, re-expresiones, scores_by_k de
|
||||
# KMeans, estadísticos de normalidad). Se le pasa el `prof` vía
|
||||
# meta['profile']; un meta propio evita alterar el de PDF/PPTX.
|
||||
md_meta = dict(meta)
|
||||
md_meta["profile"] = prof
|
||||
rmd = render_automatic_eda_markdown(prof, md_path, md_meta) or {}
|
||||
|
||||
return {
|
||||
"status": "ok",
|
||||
"pdf_path": rpdf.get("path"),
|
||||
"pptx_path": rpptx.get("path"),
|
||||
"aeda_md_path": rmd.get("path"),
|
||||
"manifest_path": rpdf.get("manifest_path"),
|
||||
"n_pages": rpdf.get("n_pages"),
|
||||
"n_slides": rpptx.get("n_slides"),
|
||||
"md_chars": rmd.get("n_chars"),
|
||||
"pdf_note": rpdf.get("note"),
|
||||
"pptx_note": rpptx.get("note"),
|
||||
"md_note": rmd.get("note"),
|
||||
"profile": prof,
|
||||
}
|
||||
except Exception as e: # noqa: BLE001 — dict-no-throw: degradar, nunca lanzar.
|
||||
|
||||
@@ -89,3 +89,170 @@ def test_pipeline_bad_db_degrades_without_raising(tmp_path):
|
||||
out_dir=str(tmp_path / "o"))
|
||||
assert r["status"] == "error"
|
||||
assert "error" in r
|
||||
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# profile_level: preset de bajo consumo CPU/LLM.
|
||||
# --------------------------------------------------------------------------- #
|
||||
def _make_db_models(path):
|
||||
"""DB con >=2 numéricas continuas (alta cardinalidad, 3 clusters gaussianos).
|
||||
|
||||
El DB `sales` de _make_db solo deja UNA columna de modelo tras la selección de
|
||||
features (units es baja cardinalidad, lat/lon discretizadas), insuficiente para
|
||||
PCA/KMeans/IsolationForest (necesitan >=2). Este DB sí tiene 3 numéricas
|
||||
continuas con estructura de clusters para que el modo completo ejecute los
|
||||
multivariantes.
|
||||
"""
|
||||
import random
|
||||
from datetime import date, timedelta
|
||||
|
||||
con = duckdb.connect(path)
|
||||
con.execute(
|
||||
"CREATE TABLE pts (d DATE, grp VARCHAR, x1 DOUBLE, x2 DOUBLE, x3 DOUBLE)"
|
||||
)
|
||||
random.seed(42)
|
||||
centers = [(0.0, 0.0, 0.0), (10.0, 10.0, 10.0), (20.0, 5.0, 15.0)]
|
||||
d0 = date(2024, 1, 1)
|
||||
rows = []
|
||||
for i in range(150):
|
||||
cx, cy, cz = centers[i % 3]
|
||||
rows.append((
|
||||
d0 + timedelta(days=i), f"g{i % 3}",
|
||||
round(cx + random.gauss(0, 1.0), 4),
|
||||
round(cy + random.gauss(0, 1.0), 4),
|
||||
round(cz + random.gauss(0, 1.0), 4),
|
||||
))
|
||||
con.executemany("INSERT INTO pts VALUES (?,?,?,?,?)", rows)
|
||||
con.close()
|
||||
|
||||
|
||||
def test_profile_level_lite_skips_expensive_models(tmp_path):
|
||||
"""lite: el bloque models trae PCA + normalidad pero NO KMeans/IsolationForest.
|
||||
|
||||
Demuestra (DoD bajo consumo) que el camino lite no ejecuta los modelos caros
|
||||
en CPU ni la capa LLM ni la serie temporal: prof['models'] queda con pca y
|
||||
normality poblados y kmeans/outliers a None, prof['llm'] y prof['series'] a
|
||||
None, y el capítulo `modelos` se renderiza igualmente (con PCA, sin clusters).
|
||||
"""
|
||||
import json
|
||||
|
||||
db = str(tmp_path / "pts.duckdb")
|
||||
_make_db_models(db)
|
||||
out = str(tmp_path / "out")
|
||||
r = render_automatic_eda(db, "pts", profile_level="lite",
|
||||
out_dir=out, basename="lite")
|
||||
assert r["status"] == "ok", r.get("error")
|
||||
|
||||
models = (r["profile"] or {}).get("models") or {}
|
||||
assert models.get("pca") is not None, "lite debe traer PCA"
|
||||
assert models.get("normality") is not None, "lite debe traer normalidad"
|
||||
assert models.get("kmeans") is None, "lite NO debe ejecutar KMeans"
|
||||
assert models.get("outliers") is None, "lite NO debe ejecutar IsolationForest"
|
||||
assert (r["profile"] or {}).get("llm") is None, "lite NO debe llamar al LLM"
|
||||
assert (r["profile"] or {}).get("series") is None, "lite NO debe calcular serie"
|
||||
|
||||
# El capítulo modelos sigue presente (lo puebla el PCA), sin clusters KMeans.
|
||||
with open(r["manifest_path"], encoding="utf-8") as fh:
|
||||
man = json.load(fh)
|
||||
assert "modelos" in (man.get("chapters") or {})
|
||||
|
||||
|
||||
def test_profile_level_standard_runs_full_models(tmp_path):
|
||||
"""standard (default): modelos completos (KMeans + IsolationForest) y serie."""
|
||||
db = str(tmp_path / "pts.duckdb")
|
||||
_make_db_models(db)
|
||||
out = str(tmp_path / "out")
|
||||
r = render_automatic_eda(db, "pts", profile_level="standard",
|
||||
out_dir=out, basename="std")
|
||||
assert r["status"] == "ok", r.get("error")
|
||||
models = (r["profile"] or {}).get("models") or {}
|
||||
assert models.get("pca") is not None
|
||||
assert models.get("kmeans") is not None, "standard debe ejecutar KMeans"
|
||||
assert models.get("outliers") is not None, "standard debe ejecutar IsolationForest"
|
||||
assert (r["profile"] or {}).get("series") is not None, "standard calcula serie"
|
||||
|
||||
|
||||
def _patch_pipeline_internals(monkeypatch, captured):
|
||||
"""Stub de las dependencias del pipeline para tests de resolución de flags.
|
||||
|
||||
Sustituye profile_table / build_eda_render_ctx / renderers por stubs rápidos
|
||||
sin red ni matplotlib, capturando los kwargs con los que se invocan. Permite
|
||||
verificar la PRECEDENCIA flag-explícito-sobre-preset sin ejecutar el EDA real.
|
||||
"""
|
||||
import pipelines.render_automatic_eda as mod
|
||||
|
||||
def fake_profile_table(db_path, table, **kw):
|
||||
captured["run_llm"] = kw.get("run_llm")
|
||||
captured["run_models"] = kw.get("run_models")
|
||||
captured["run_series"] = kw.get("run_series")
|
||||
captured["sample"] = kw.get("sample")
|
||||
return {"status": "ok", "profile": {"columns": []}}
|
||||
|
||||
def fake_ctx(db_path, table, prof, **kw):
|
||||
captured["base_ctx"] = kw.get("base_ctx")
|
||||
return {}
|
||||
|
||||
monkeypatch.setattr(mod, "profile_table", fake_profile_table)
|
||||
monkeypatch.setattr(mod, "build_eda_render_ctx", fake_ctx)
|
||||
monkeypatch.setattr(mod, "render_automatic_eda_pdf",
|
||||
lambda *a, **k: {"path": "x.pdf", "n_pages": 1,
|
||||
"manifest_path": "m.json"})
|
||||
monkeypatch.setattr(mod, "render_automatic_eda_pptx",
|
||||
lambda *a, **k: {"path": "x.pptx", "n_slides": 1})
|
||||
|
||||
|
||||
def test_explicit_flag_overrides_preset(monkeypatch):
|
||||
"""Precedencia: profile_level='lite' con run_llm=True explícito → LLM activo.
|
||||
|
||||
El flag explícito del caller gana al default del preset. Se verifica tanto en
|
||||
el flag que llega a profile_table (run_llm=True ⇒ profile_table llamará al
|
||||
LLM) como en el base_ctx (run_cluster_llm=True ⇒ narrativa LLM por capítulo).
|
||||
"""
|
||||
captured = {}
|
||||
_patch_pipeline_internals(monkeypatch, captured)
|
||||
|
||||
captured.clear()
|
||||
render_automatic_eda("db", "t", profile_level="lite", run_llm=True)
|
||||
assert captured["run_llm"] is True, "flag explícito debe primar sobre preset lite"
|
||||
assert (captured["base_ctx"] or {}).get("run_cluster_llm") is True
|
||||
|
||||
|
||||
def test_full_preset_enables_llm(monkeypatch):
|
||||
"""full: el preset resuelve run_llm=True y activa la narrativa LLM en el ctx."""
|
||||
captured = {}
|
||||
_patch_pipeline_internals(monkeypatch, captured)
|
||||
|
||||
captured.clear()
|
||||
render_automatic_eda("db", "t", profile_level="full")
|
||||
assert captured["run_llm"] is True
|
||||
assert (captured["base_ctx"] or {}).get("run_cluster_llm") is True
|
||||
|
||||
|
||||
def test_no_profile_level_defaults_to_standard(monkeypatch):
|
||||
"""Retro-compat: sin profile_level ni flags, el comportamiento es el histórico.
|
||||
|
||||
standard = run_models True, run_series True, run_llm False, sample 5000. Es el
|
||||
mismo default que tenía el pipeline antes de introducir profile_level (cambio
|
||||
aditivo: las llamadas existentes no cambian de comportamiento).
|
||||
"""
|
||||
captured = {}
|
||||
_patch_pipeline_internals(monkeypatch, captured)
|
||||
|
||||
captured.clear()
|
||||
render_automatic_eda("db", "t") # sin profile_level ni flags de coste
|
||||
assert captured["run_models"] is True
|
||||
assert captured["run_series"] is True
|
||||
assert captured["run_llm"] is False
|
||||
assert captured["sample"] == 5000
|
||||
|
||||
|
||||
def test_lite_preset_defaults(monkeypatch):
|
||||
"""lite por defecto: run_llm/run_series False y sample reducido a 2000."""
|
||||
captured = {}
|
||||
_patch_pipeline_internals(monkeypatch, captured)
|
||||
|
||||
captured.clear()
|
||||
render_automatic_eda("db", "t", profile_level="lite")
|
||||
assert captured["run_llm"] is False
|
||||
assert captured["run_series"] is False
|
||||
assert captured["sample"] == 2000
|
||||
|
||||
@@ -18,6 +18,7 @@ dependencies = [
|
||||
"google-cloud-bigquery-storage>=2.27",
|
||||
"google-cloud-storage>=3.10.1",
|
||||
"httpx",
|
||||
"langdetect>=1.0.9",
|
||||
"matplotlib>=3.10.9",
|
||||
"opencv-contrib-python-headless>=4.13.0.92",
|
||||
"openpyxl>=3.1.5",
|
||||
@@ -40,6 +41,7 @@ dependencies = [
|
||||
"seaborn>=0.13.2",
|
||||
"shapely>=2.1.2",
|
||||
"statsmodels>=0.14.6",
|
||||
"textstat>=0.7.13",
|
||||
"trimesh>=4.12.2",
|
||||
"xlrd>=2.0.2",
|
||||
]
|
||||
|
||||
Generated
+96
@@ -899,6 +899,7 @@ dependencies = [
|
||||
{ name = "google-cloud-bigquery-storage" },
|
||||
{ name = "google-cloud-storage" },
|
||||
{ name = "httpx" },
|
||||
{ name = "langdetect" },
|
||||
{ name = "matplotlib" },
|
||||
{ name = "opencv-contrib-python-headless" },
|
||||
{ name = "openpyxl" },
|
||||
@@ -906,9 +907,11 @@ dependencies = [
|
||||
{ name = "polars" },
|
||||
{ name = "pymeshlab" },
|
||||
{ name = "pymssql" },
|
||||
{ name = "pymupdf" },
|
||||
{ name = "pypdf" },
|
||||
{ name = "pyproj" },
|
||||
{ name = "python-docx" },
|
||||
{ name = "python-pptx" },
|
||||
{ name = "pyyaml" },
|
||||
{ name = "qrcode", extra = ["pil"] },
|
||||
{ name = "rapidfuzz" },
|
||||
@@ -919,6 +922,7 @@ dependencies = [
|
||||
{ name = "seaborn" },
|
||||
{ name = "shapely" },
|
||||
{ name = "statsmodels" },
|
||||
{ name = "textstat" },
|
||||
{ name = "trimesh" },
|
||||
{ name = "xlrd" },
|
||||
]
|
||||
@@ -959,6 +963,7 @@ requires-dist = [
|
||||
{ name = "jupyter-collaboration", marker = "extra == 'jupyter'", specifier = ">=2.0" },
|
||||
{ name = "jupyter-mcp-server", marker = "extra == 'jupyter'" },
|
||||
{ name = "jupyterlab", marker = "extra == 'jupyter'", specifier = ">=4.0" },
|
||||
{ name = "langdetect", specifier = ">=1.0.9" },
|
||||
{ name = "matplotlib", specifier = ">=3.10.9" },
|
||||
{ name = "opencv-contrib-python-headless", specifier = ">=4.13.0.92" },
|
||||
{ name = "openpyxl", specifier = ">=3.1.5" },
|
||||
@@ -966,9 +971,11 @@ requires-dist = [
|
||||
{ name = "polars", specifier = ">=1.40.1" },
|
||||
{ name = "pymeshlab", specifier = ">=2025.7.post1" },
|
||||
{ name = "pymssql", specifier = ">=2.3.13" },
|
||||
{ name = "pymupdf", specifier = ">=1.28.0" },
|
||||
{ name = "pypdf", specifier = ">=6.10.0" },
|
||||
{ name = "pyproj", specifier = ">=3.7.2" },
|
||||
{ name = "python-docx", specifier = ">=1.2.0" },
|
||||
{ name = "python-pptx", specifier = ">=1.0.2" },
|
||||
{ name = "pyyaml", specifier = ">=6.0.3" },
|
||||
{ name = "qrcode", extras = ["pil"], specifier = ">=8.2" },
|
||||
{ name = "rapidfuzz", specifier = ">=3.14.5" },
|
||||
@@ -979,6 +986,7 @@ requires-dist = [
|
||||
{ name = "seaborn", specifier = ">=0.13.2" },
|
||||
{ name = "shapely", specifier = ">=2.1.2" },
|
||||
{ name = "statsmodels", specifier = ">=0.14.6" },
|
||||
{ name = "textstat", specifier = ">=0.7.13" },
|
||||
{ name = "trimesh", specifier = ">=4.12.2" },
|
||||
{ name = "xlrd", specifier = ">=2.0.2" },
|
||||
]
|
||||
@@ -2198,6 +2206,15 @@ wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/b5/91/53255615acd2a1eaca307ede3c90eb550bae9c94581f8c00081b6b1c8f44/kiwisolver-1.5.0-graalpy312-graalpy250_312_native-win_amd64.whl", hash = "sha256:1f1489f769582498610e015a8ef2d36f28f505ab3096d0e16b4858a9ec214f57", size = 75987, upload-time = "2026-03-09T13:15:39.65Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "langdetect"
|
||||
version = "1.0.9"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
dependencies = [
|
||||
{ name = "six" },
|
||||
]
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/0e/72/a3add0e4eec4eb9e2569554f7c70f4a3c27712f40e3284d483e88094cc0e/langdetect-1.0.9.tar.gz", hash = "sha256:cbc1fef89f8d062739774bd51eda3da3274006b3661d199c2655f6b3f6d605a0", size = 981474, upload-time = "2021-05-07T07:54:13.562Z" }
|
||||
|
||||
[[package]]
|
||||
name = "lark"
|
||||
version = "1.3.1"
|
||||
@@ -2699,6 +2716,21 @@ wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/9e/c9/b2622292ea83fbb4ec318f5b9ab867d0a28ab43c5717bb85b0a5f6b3b0a4/networkx-3.6.1-py3-none-any.whl", hash = "sha256:d47fbf302e7d9cbbb9e2555a0d267983d2aa476bac30e90dfbe5669bd57f3762", size = 2068504, upload-time = "2025-12-08T17:02:38.159Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "nltk"
|
||||
version = "3.9.4"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
dependencies = [
|
||||
{ name = "click" },
|
||||
{ name = "joblib" },
|
||||
{ name = "regex" },
|
||||
{ name = "tqdm" },
|
||||
]
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/74/a1/b3b4adf15585a5bc4c357adde150c01ebeeb642173ded4d871e89468767c/nltk-3.9.4.tar.gz", hash = "sha256:ed03bc098a40481310320808b2db712d95d13ca65b27372f8a403949c8b523d0", size = 2946864, upload-time = "2026-03-24T06:13:40.641Z" }
|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/9d/91/04e965f8e717ba0ab4bdca5c112deeab11c9e750d94c4d4602f050295d39/nltk-3.9.4-py3-none-any.whl", hash = "sha256:f2fa301c3a12718ce4a0e9305c5675299da5ad9e26068218b69d692fda84828f", size = 1552087, upload-time = "2026-03-24T06:13:38.47Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "notebook-shim"
|
||||
version = "0.2.4"
|
||||
@@ -3750,6 +3782,23 @@ wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/25/50/4be9bd9cf4b43208a7175117a533ece200cfe4131a39f9909bdc7560ddeb/pymssql-2.3.13-cp314-cp314-win_amd64.whl", hash = "sha256:7d7037d2b5b907acc7906d0479924db2935a70c720450c41339146a4ada2b93d", size = 2049139, upload-time = "2026-02-14T05:00:23.951Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "pymupdf"
|
||||
version = "1.28.0"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/8e/e9/6d6c5d6c0a3551bffd47681a6240caf941727f195b45593cf20ab36f018f/pymupdf-1.28.0.tar.gz", hash = "sha256:e53f3567403a92da15caa9e7ae0164327fff48817e9f40175367fb9de524258d", size = 87637751, upload-time = "2026-06-29T09:08:47.547Z" }
|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/c8/b7/88043e38cc7529de070f0c9bd267fa258035cca0b4ad5260536b994594a7/pymupdf-1.28.0-cp310-abi3-macosx_10_15_x86_64.whl", hash = "sha256:892b89ba88e8f98b53133b62877a9dc9b5e7dc6a4aeb837b612db56a8d2e03ac", size = 24597385, upload-time = "2026-06-29T09:03:30.608Z" },
|
||||
{ url = "https://files.pythonhosted.org/packages/33/f4/23775bbda0781b61fc398cc75079a2b0e64696d8fcf93271748883e9627e/pymupdf-1.28.0-cp310-abi3-macosx_11_0_arm64.whl", hash = "sha256:4d692dcf44d3566ae96bc6f6346c6ad432274a29ba617bf7a9fe18009e24adb4", size = 23828292, upload-time = "2026-06-29T09:03:46.129Z" },
|
||||
{ url = "https://files.pythonhosted.org/packages/1c/f5/bf75fc7a415722f8b33662054f82d88520c0cbfd4c36d0e08aeaec605e49/pymupdf-1.28.0-cp310-abi3-manylinux_2_28_aarch64.whl", hash = "sha256:47a5c29ed4eb0744de9c4e37bb49b1259b18d4d75fcc8a7c130f7c9fa15956f6", size = 25045507, upload-time = "2026-06-29T09:04:03.86Z" },
|
||||
{ url = "https://files.pythonhosted.org/packages/58/69/5d12c9f1f2d76f28383d6110a069c79fbfced5a4f97bb1ee6e8354f52bb7/pymupdf-1.28.0-cp310-abi3-manylinux_2_28_x86_64.whl", hash = "sha256:44f0973f5e5edbaec95bc34b64e71d1959d4ee90b1328de1b4f4f5b4fa78673f", size = 25716599, upload-time = "2026-06-29T09:04:19.367Z" },
|
||||
{ url = "https://files.pythonhosted.org/packages/4d/b4/ec0e017bc42857cc86bd651441dbc41cc18be48d4698ecd27aac491e0c9a/pymupdf-1.28.0-cp310-abi3-musllinux_1_2_x86_64.whl", hash = "sha256:4d61ec323a706e153a12e262e51febfb43eeaa20977785ace135d18d48bcdc83", size = 25940489, upload-time = "2026-06-29T09:04:36.624Z" },
|
||||
{ url = "https://files.pythonhosted.org/packages/06/86/f831fef09013f33b3c9c09fb3923f2ff53e1e437f6ace14b8ae46392f558/pymupdf-1.28.0-cp310-abi3-win32.whl", hash = "sha256:caea2b3b67347fd79e5d15ed7929b0e886aac594ea228073b6d39de0078189da", size = 18489703, upload-time = "2026-06-29T20:50:30.599Z" },
|
||||
{ url = "https://files.pythonhosted.org/packages/2e/5d/1a03f53eb0449900469335fcfc742ca28e3ba159b7d650e0921d50b8b308/pymupdf-1.28.0-cp310-abi3-win_amd64.whl", hash = "sha256:e01e90fd86abfeb37ceb921eddb951f988a11d45ff6ce6b7664f2039849068ec", size = 19773102, upload-time = "2026-06-29T09:04:49.773Z" },
|
||||
{ url = "https://files.pythonhosted.org/packages/72/f6/1e52ce243ca792254f6223b4017c5667194c146ce9b88baf37bc5eb3d1c9/pymupdf-1.28.0-cp313-abi3-pyemscripten_2025_0_wasm32.whl", hash = "sha256:74c6d00ba2a9aad3a635db73b07c15db462b480741d831a34a75a56535ebc22b", size = 18357011, upload-time = "2026-06-29T20:50:50.353Z" },
|
||||
{ url = "https://files.pythonhosted.org/packages/62/b1/46b5b3d8ef3cc71114667cf10c4d8b33f39af97253af32e9a0986775b638/pymupdf-1.28.0-cp314-cp314t-manylinux_2_28_x86_64.whl", hash = "sha256:b3e1399c7a64c6914239116a369efcdaac4cfb9e838bde2656d7accc4a85c72d", size = 25753599, upload-time = "2026-06-29T09:05:09.398Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "pyogrio"
|
||||
version = "0.12.1"
|
||||
@@ -3811,6 +3860,15 @@ wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/55/f2/7ebe366f633f30a6ad105f650f44f24f98cb1335c4157d21ae47138b3482/pypdf-6.10.0-py3-none-any.whl", hash = "sha256:90005e959e1596c6e6c84c8b0ad383285b3e17011751cedd17f2ce8fcdfc86de", size = 334459, upload-time = "2026-04-10T09:34:54.966Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "pyphen"
|
||||
version = "0.17.2"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/69/56/e4d7e1bd70d997713649c5ce530b2d15a5fc2245a74ca820fc2d51d89d4d/pyphen-0.17.2.tar.gz", hash = "sha256:f60647a9c9b30ec6c59910097af82bc5dd2d36576b918e44148d8b07ef3b4aa3", size = 2079470, upload-time = "2025-01-20T13:18:36.296Z" }
|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/7b/1f/c2142d2edf833a90728e5cdeb10bdbdc094dde8dbac078cee0cf33f5e11b/pyphen-0.17.2-py3-none-any.whl", hash = "sha256:3a07fb017cb2341e1d9ff31b8634efb1ae4dc4b130468c7c39dd3d32e7c3affd", size = 2079358, upload-time = "2025-01-20T13:18:29.629Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "pyproj"
|
||||
version = "3.7.2"
|
||||
@@ -3935,6 +3993,21 @@ wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/1c/fd/0318007beb234790993d3ec5afd051d1dbceb733e81e3afe2b981ece3f37/python_multipart-0.0.30-py3-none-any.whl", hash = "sha256:830964def8c90607ac5daa00514e3987815865713ade8d20febc9177ac0c3c5b", size = 29730, upload-time = "2026-05-31T19:24:53.814Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "python-pptx"
|
||||
version = "1.0.2"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
dependencies = [
|
||||
{ name = "lxml" },
|
||||
{ name = "pillow" },
|
||||
{ name = "typing-extensions" },
|
||||
{ name = "xlsxwriter" },
|
||||
]
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/52/a9/0c0db8d37b2b8a645666f7fd8accea4c6224e013c42b1d5c17c93590cd06/python_pptx-1.0.2.tar.gz", hash = "sha256:479a8af0eaf0f0d76b6f00b0887732874ad2e3188230315290cd1f9dd9cc7095", size = 10109297, upload-time = "2024-08-07T17:33:37.772Z" }
|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/d9/4f/00be2196329ebbff56ce564aa94efb0fbc828d00de250b1980de1a34ab49/python_pptx-1.0.2-py3-none-any.whl", hash = "sha256:160838e0b8565a8b1f67947675886e9fea18aa5e795db7ae531606d68e785cba", size = 472788, upload-time = "2024-08-07T17:33:28.192Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "pywin32"
|
||||
version = "311"
|
||||
@@ -4936,6 +5009,20 @@ wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/6a/9e/2064975477fdc887e47ad42157e214526dcad8f317a948dee17e1659a62f/terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0", size = 14154, upload-time = "2024-03-12T14:34:36.569Z" },
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||||
]
|
||||
|
||||
[[package]]
|
||||
name = "textstat"
|
||||
version = "0.7.13"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
dependencies = [
|
||||
{ name = "nltk" },
|
||||
{ name = "pyphen" },
|
||||
{ name = "setuptools" },
|
||||
]
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/8c/0f/b673fcec5ad6e976b2e8368ef3651fe0fea3348a1191bacfcd41a17ddec6/textstat-0.7.13.tar.gz", hash = "sha256:a88d1da76287cd27ca4ce7bcba1ebaf2890544a5f0bb6a5758fa84cef3bceccb", size = 138932, upload-time = "2026-02-18T21:07:39.525Z" }
|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/ca/31/0eb4cc5bb021b4ceaaa602c59ba16ce99256b9dd30981bef3f3a53d8555f/textstat-0.7.13-py3-none-any.whl", hash = "sha256:04b1ec995d1e8b2e628759497e6b23204a9ec91dcd652447d8cbba9478f25471", size = 177050, upload-time = "2026-02-18T21:07:38.163Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "threadpoolctl"
|
||||
version = "3.6.0"
|
||||
@@ -5312,6 +5399,15 @@ wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/1a/62/c8d562e7766786ba6587d09c5a8ba9f718ed3fa8af7f4553e8f91c36f302/xlrd-2.0.2-py2.py3-none-any.whl", hash = "sha256:ea762c3d29f4cca48d82df517b6d89fbce4db3107f9d78713e48cd321d5c9aa9", size = 96555, upload-time = "2025-06-14T08:46:37.766Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "xlsxwriter"
|
||||
version = "3.2.9"
|
||||
source = { registry = "https://pypi.org/simple" }
|
||||
sdist = { url = "https://files.pythonhosted.org/packages/46/2c/c06ef49dc36e7954e55b802a8b231770d286a9758b3d936bd1e04ce5ba88/xlsxwriter-3.2.9.tar.gz", hash = "sha256:254b1c37a368c444eac6e2f867405cc9e461b0ed97a3233b2ac1e574efb4140c", size = 215940, upload-time = "2025-09-16T00:16:21.63Z" }
|
||||
wheels = [
|
||||
{ url = "https://files.pythonhosted.org/packages/3a/0c/3662f4a66880196a590b202f0db82d919dd2f89e99a27fadef91c4a33d41/xlsxwriter-3.2.9-py3-none-any.whl", hash = "sha256:9a5db42bc5dff014806c58a20b9eae7322a134abb6fce3c92c181bfb275ec5b3", size = 175315, upload-time = "2025-09-16T00:16:20.108Z" },
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "xxhash"
|
||||
version = "3.7.0"
|
||||
|
||||
Reference in New Issue
Block a user